public class CytoscapeToCellDesignerConverter
extends java.lang.Object
Constructor and Description |
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CytoscapeToCellDesignerConverter() |
Modifier and Type | Method and Description |
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static void |
assignColors(SbmlDocument sbml,
GraphDocument gr) |
static void |
assignColorsFromTableReactions(SbmlDocument sbml,
java.util.HashMap colorTable) |
static void |
assignColorsFromTableSpecies(SbmlDocument sbml,
java.util.HashMap colorTable) |
static void |
copyLayout(SbmlDocument sbml,
GraphDocument gr) |
static void |
filterIDs(SbmlDocument sbml,
GraphDocument gr) |
static void |
filterIDs(SbmlDocument sbml,
java.util.Vector species,
java.util.Vector speciesAliases,
java.util.Vector reactions,
java.util.Vector degraded) |
static void |
filterIDsCompleteReactions(SbmlDocument sbml,
java.util.Vector species,
java.util.Vector speciesAliases,
java.util.Vector reactions,
java.util.Vector degraded) |
static void |
main(java.lang.String[] args) |
public static void main(java.lang.String[] args)
public static void copyLayout(SbmlDocument sbml, GraphDocument gr)
public static void filterIDs(SbmlDocument sbml, GraphDocument gr)
public static void filterIDs(SbmlDocument sbml, java.util.Vector species, java.util.Vector speciesAliases, java.util.Vector reactions, java.util.Vector degraded)
public static void filterIDsCompleteReactions(SbmlDocument sbml, java.util.Vector species, java.util.Vector speciesAliases, java.util.Vector reactions, java.util.Vector degraded)
public static void assignColors(SbmlDocument sbml, GraphDocument gr)
public static void assignColorsFromTableSpecies(SbmlDocument sbml, java.util.HashMap colorTable)
public static void assignColorsFromTableReactions(SbmlDocument sbml, java.util.HashMap colorTable)