public interface SmallMolecule extends PhysicalEntity
(URI: http://www.biopax.org/release/biopax-level3.owl#SmallMolecule)
Modifier and Type | Field and Description |
---|---|
static com.hp.hpl.jena.rdf.model.Property |
entityReferenceProperty
The Jena Property for entityReference
|
static Resource |
TYPE
The rdf:type for this ontology class
|
cellularLocationProperty, featureProperty, memberPhysicalEntityProperty, notFeatureProperty
availabilityProperty, commentProperty, dataSourceProperty, evidenceProperty, nameProperty, xrefProperty
Modifier and Type | Method and Description |
---|---|
BindingFeature |
addFeature_asBindingFeature()
Adds an anonymous value for the 'feature' property
|
BindingFeature |
addFeature_asBindingFeature(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'feature' property.
|
void |
addFeature(BindingFeature feature)
Adds a value for the 'feature' property
|
SmallMolecule |
addMemberPhysicalEntity_asSmallMolecule()
Adds an anonymous value for the 'memberPhysicalEntity' property
|
SmallMolecule |
addMemberPhysicalEntity_asSmallMolecule(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'memberPhysicalEntity' property.
|
void |
addMemberPhysicalEntity(SmallMolecule memberPhysicalEntity)
Adds a value for the 'memberPhysicalEntity' property
|
BindingFeature |
addNotFeature_asBindingFeature()
Adds an anonymous value for the 'notFeature' property
|
BindingFeature |
addNotFeature_asBindingFeature(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'notFeature' property.
|
void |
addNotFeature(BindingFeature notFeature)
Adds a value for the 'notFeature' property
|
SmallMoleculeReference |
getEntityReference_asSmallMoleculeReference()
Gets the 'entityReference' property value
|
EntityReference |
getEntityReference()
Gets the 'entityReference' property value
|
java.util.Iterator |
getFeature_asBindingFeature()
Get an Iterator the 'feature' property values.
|
java.util.Iterator |
getMemberPhysicalEntity_asSmallMolecule()
Get an Iterator the 'memberPhysicalEntity' property values.
|
java.util.Iterator |
getNotFeature_asBindingFeature()
Get an Iterator the 'notFeature' property values.
|
void |
removeFeature(BindingFeature feature)
Removes a value for the 'feature' property.
|
void |
removeMemberPhysicalEntity(SmallMolecule memberPhysicalEntity)
Removes a value for the 'memberPhysicalEntity' property.
|
void |
removeNotFeature(BindingFeature notFeature)
Removes a value for the 'notFeature' property.
|
SmallMoleculeReference |
setEntityReference_asSmallMoleculeReference()
Sets the 'entityReference' property value to an anonymous node
|
SmallMoleculeReference |
setEntityReference_asSmallMoleculeReference(com.hp.hpl.jena.rdf.model.Resource resource)
Sets the 'entityReference' property value to the given resource, and add's rdf:type properties.
|
EntityReference |
setEntityReference()
Sets the 'entityReference' property value to an anonymous node
|
EntityReference |
setEntityReference(com.hp.hpl.jena.rdf.model.Resource resource)
Sets the 'entityReference' property value to the given resource, and add's rdf:type properties.
|
void |
setEntityReference(EntityReference entityReference)
Sets the 'entityReference' property value
|
addFeature, addFeature, addMemberPhysicalEntity, addMemberPhysicalEntity, addNotFeature, addNotFeature, getCellularLocation, getFeature, getMemberPhysicalEntity, getNotFeature, removeFeature, removeMemberPhysicalEntity, removeNotFeature, setCellularLocation, setCellularLocation, setCellularLocation
addAvailability, addComment, addDataSource, addDataSource, addDataSource, addEvidence, addEvidence, addEvidence, addName, addXref, addXref, addXref, getAvailability, getComment, getDataSource, getEvidence, getName, getXref, removeAvailability, removeComment, removeDataSource, removeEvidence, removeName, removeXref
static final Resource TYPE
static final com.hp.hpl.jena.rdf.model.Property entityReferenceProperty
(URI: http://www.biopax.org/release/biopax-level3.owl#entityReference)
java.util.Iterator getFeature_asBindingFeature() throws com.ibm.adtech.jastor.JastorException
Iterator
of BindingFeature
com.ibm.adtech.jastor.JastorException
PhysicalEntity.featureProperty
void addFeature(BindingFeature feature) throws com.ibm.adtech.jastor.JastorException
addFeature
in interface PhysicalEntity
The
- BindingFeature
to addcom.ibm.adtech.jastor.JastorException
PhysicalEntity.featureProperty
BindingFeature addFeature_asBindingFeature() throws com.ibm.adtech.jastor.JastorException
BindingFeature
createdcom.ibm.adtech.jastor.JastorException
PhysicalEntity.featureProperty
BindingFeature addFeature_asBindingFeature(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
BindingFeature
with the factory
and calling addFeature(fr.curie.BiNoM.pathways.biopax.BindingFeature feature)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#BindingFeature. That is, this method
should not be used as a shortcut for creating new objects in the model.The
- om.hp.hpl.jena.rdf.model.Resource
to addcom.ibm.adtech.jastor.JastorException
PhysicalEntity.featureProperty
void removeFeature(BindingFeature feature) throws com.ibm.adtech.jastor.JastorException
The
- BindingFeature
to removecom.ibm.adtech.jastor.JastorException
PhysicalEntity.featureProperty
java.util.Iterator getNotFeature_asBindingFeature() throws com.ibm.adtech.jastor.JastorException
Iterator
of BindingFeature
com.ibm.adtech.jastor.JastorException
PhysicalEntity.notFeatureProperty
void addNotFeature(BindingFeature notFeature) throws com.ibm.adtech.jastor.JastorException
addNotFeature
in interface PhysicalEntity
The
- BindingFeature
to addcom.ibm.adtech.jastor.JastorException
PhysicalEntity.notFeatureProperty
BindingFeature addNotFeature_asBindingFeature() throws com.ibm.adtech.jastor.JastorException
BindingFeature
createdcom.ibm.adtech.jastor.JastorException
PhysicalEntity.notFeatureProperty
BindingFeature addNotFeature_asBindingFeature(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
BindingFeature
with the factory
and calling addNotFeature(fr.curie.BiNoM.pathways.biopax.BindingFeature notFeature)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#BindingFeature. That is, this method
should not be used as a shortcut for creating new objects in the model.The
- om.hp.hpl.jena.rdf.model.Resource
to addcom.ibm.adtech.jastor.JastorException
PhysicalEntity.notFeatureProperty
void removeNotFeature(BindingFeature notFeature) throws com.ibm.adtech.jastor.JastorException
The
- BindingFeature
to removecom.ibm.adtech.jastor.JastorException
PhysicalEntity.notFeatureProperty
java.util.Iterator getMemberPhysicalEntity_asSmallMolecule() throws com.ibm.adtech.jastor.JastorException
Iterator
of SmallMolecule
com.ibm.adtech.jastor.JastorException
PhysicalEntity.memberPhysicalEntityProperty
void addMemberPhysicalEntity(SmallMolecule memberPhysicalEntity) throws com.ibm.adtech.jastor.JastorException
addMemberPhysicalEntity
in interface PhysicalEntity
The
- SmallMolecule
to addcom.ibm.adtech.jastor.JastorException
PhysicalEntity.memberPhysicalEntityProperty
SmallMolecule addMemberPhysicalEntity_asSmallMolecule() throws com.ibm.adtech.jastor.JastorException
SmallMolecule
createdcom.ibm.adtech.jastor.JastorException
PhysicalEntity.memberPhysicalEntityProperty
SmallMolecule addMemberPhysicalEntity_asSmallMolecule(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
SmallMolecule
with the factory
and calling addMemberPhysicalEntity(fr.curie.BiNoM.pathways.biopax.SmallMolecule memberPhysicalEntity)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#SmallMolecule. That is, this method
should not be used as a shortcut for creating new objects in the model.The
- om.hp.hpl.jena.rdf.model.Resource
to addcom.ibm.adtech.jastor.JastorException
PhysicalEntity.memberPhysicalEntityProperty
void removeMemberPhysicalEntity(SmallMolecule memberPhysicalEntity) throws com.ibm.adtech.jastor.JastorException
The
- SmallMolecule
to removecom.ibm.adtech.jastor.JastorException
PhysicalEntity.memberPhysicalEntityProperty
EntityReference getEntityReference() throws com.ibm.adtech.jastor.JastorException
EntityReference
com.ibm.adtech.jastor.JastorException
entityReferenceProperty
void setEntityReference(EntityReference entityReference) throws com.ibm.adtech.jastor.JastorException
{@link
- fr.curie.BiNoM.pathways.biopax.EntityReference}com.ibm.adtech.jastor.JastorException
entityReferenceProperty
EntityReference setEntityReference() throws com.ibm.adtech.jastor.JastorException
EntityReference
, the created valuecom.ibm.adtech.jastor.JastorException
entityReferenceProperty
EntityReference setEntityReference(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
EntityReference
with the factory.
and calling setEntityReference(fr.curie.BiNoM.pathways.biopax.EntityReference entityReference)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#EntityReference. That is, this method
should not be used as a shortcut for creating new objects in the model.{@link
- com.hp.hpl.jena.rdf.model.Resource} must not be be null.EntityReference
, the newly created valuecom.ibm.adtech.jastor.JastorException
entityReferenceProperty
SmallMoleculeReference getEntityReference_asSmallMoleculeReference() throws com.ibm.adtech.jastor.JastorException
SmallMoleculeReference
com.ibm.adtech.jastor.JastorException
entityReferenceProperty
SmallMoleculeReference setEntityReference_asSmallMoleculeReference() throws com.ibm.adtech.jastor.JastorException
SmallMoleculeReference
, the created valuecom.ibm.adtech.jastor.JastorException
entityReferenceProperty
SmallMoleculeReference setEntityReference_asSmallMoleculeReference(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
SmallMoleculeReference
with the factory.
and calling setEntityReference(fr.curie.BiNoM.pathways.biopax.SmallMoleculeReference entityReference)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#SmallMoleculeReference. That is, this method
should not be used as a shortcut for creating new objects in the model.{@link
- com.hp.hpl.jena.rdf.model.Resource} must not be be null.SmallMoleculeReference
, the newly created valuecom.ibm.adtech.jastor.JastorException
entityReferenceProperty