public class test2 extends SubnetworkProperties
ADD_FIRST_NEIGHBOURS, addOnlyConnectingNeighbours, averageSizeOfRandomBiggestComponent, complexMap, CONNECT_BY_SHORTEST_PATHS, degreeDistribution, degrees, distributionOfConnectedComponentSizes, listOfNodesInitial, modeOfSubNetworkConstruction, network, networkDistanceMatrix, path, proteinComplexMap, sampling, significanceOfConnectedComponents, SIMPLY_CONNECT, SIMPLY_CONNECT_WITH_COMPLEX_NODES, SIMPLY_CONNECT_WITH_SECOND_ORDER_CONNECTIONS, subnetwork, SubnetworkComplexProfile, subnetworkDistanceMatrix
Constructor and Description |
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test2() |
Modifier and Type | Method and Description |
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static void |
main(java.lang.String[] args) |
addComplexesToNetworkAsClicks, addComplexesToNetworksAsNodes, addComplexNodes, addComplexNodes, addFirstNeighbours, addFirstNeighbours, assignEdgeWeightsByConnectivity, calcAveragePairwiseDistance, calcDegreeDistribution, calcDistributionOfConnectedComponentSizes, calcNodeBetweenness, calcPercolationThreshold, calcSignificanceVsNumberOfGenes, calcSubnetworkComplexProfile, connectByShortestPaths, connectByShortestPaths, extractDistanceSubMatrix, generateSample, generateSampling, generateSamplingConserveDegreeDistribution, getAverageConnectivities, getAverageConnectivity, getNeighbours, getPValue, getSamplingSizes, loadNetwork, makeCompactnessTest, makeCompactnessTest, makeComplexProfile, makeTestOfConnectivity, MergeGraphs, printMassif, produceConnectionsSecondOrder, produceConnectionsSecondOrderFromDistMatrix, readComplexes, readComplexProfile, removeDoubleEdges, removeSelfInteractions, saveDistanceMatrix, saveSampling, selectNodesFromList, selectNodesFromList