public interface Pathway extends Entity
(URI: http://www.biopax.org/release/biopax-level3.owl#Pathway)
Modifier and Type | Field and Description |
---|---|
static com.hp.hpl.jena.rdf.model.Property |
organismProperty
The Jena Property for organism
|
static com.hp.hpl.jena.rdf.model.Property |
pathwayComponentProperty
The Jena Property for pathwayComponent
|
static com.hp.hpl.jena.rdf.model.Property |
pathwayOrderProperty
The Jena Property for pathwayOrder
|
static Resource |
TYPE
The rdf:type for this ontology class
|
availabilityProperty, commentProperty, dataSourceProperty, evidenceProperty, nameProperty, xrefProperty
Modifier and Type | Method and Description |
---|---|
Interaction |
addPathwayComponent_asInteraction()
Adds an anonymous value for the 'pathwayComponent' property
|
Interaction |
addPathwayComponent_asInteraction(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'pathwayComponent' property.
|
Pathway |
addPathwayComponent_asPathway()
Adds an anonymous value for the 'pathwayComponent' property
|
Pathway |
addPathwayComponent_asPathway(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'pathwayComponent' property.
|
void |
addPathwayComponent(Interaction pathwayComponent)
Adds a value for the 'pathwayComponent' property
|
void |
addPathwayComponent(Pathway pathwayComponent)
Adds a value for the 'pathwayComponent' property
|
PathwayStep |
addPathwayOrder()
Adds an anonymous value for the 'pathwayOrder' property
|
PathwayStep |
addPathwayOrder(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'pathwayOrder' property.
|
void |
addPathwayOrder(PathwayStep pathwayOrder)
Adds a value for the 'pathwayOrder' property
|
BioSource |
getOrganism()
Gets the 'organism' property value
|
java.util.Iterator |
getPathwayComponent_asInteraction()
Get an Iterator the 'pathwayComponent' property values.
|
java.util.Iterator |
getPathwayComponent_asPathway()
Get an Iterator the 'pathwayComponent' property values.
|
java.util.Iterator |
getPathwayOrder()
Get an Iterator the 'pathwayOrder' property values.
|
void |
removePathwayComponent(Interaction pathwayComponent)
Removes a value for the 'pathwayComponent' property.
|
void |
removePathwayComponent(Pathway pathwayComponent)
Removes a value for the 'pathwayComponent' property.
|
void |
removePathwayOrder(PathwayStep pathwayOrder)
Removes a value for the 'pathwayOrder' property.
|
BioSource |
setOrganism()
Sets the 'organism' property value to an anonymous node
|
void |
setOrganism(BioSource organism)
Sets the 'organism' property value
|
BioSource |
setOrganism(com.hp.hpl.jena.rdf.model.Resource resource)
Sets the 'organism' property value to the given resource, and add's rdf:type properties.
|
addAvailability, addComment, addDataSource, addDataSource, addDataSource, addEvidence, addEvidence, addEvidence, addName, addXref, addXref, addXref, getAvailability, getComment, getDataSource, getEvidence, getName, getXref, removeAvailability, removeComment, removeDataSource, removeEvidence, removeName, removeXref
static final Resource TYPE
static final com.hp.hpl.jena.rdf.model.Property pathwayOrderProperty
(URI: http://www.biopax.org/release/biopax-level3.owl#pathwayOrder)
static final com.hp.hpl.jena.rdf.model.Property pathwayComponentProperty
(URI: http://www.biopax.org/release/biopax-level3.owl#pathwayComponent)
static final com.hp.hpl.jena.rdf.model.Property organismProperty
(URI: http://www.biopax.org/release/biopax-level3.owl#organism)
java.util.Iterator getPathwayOrder() throws com.ibm.adtech.jastor.JastorException
Iterator
of PathwayStep
com.ibm.adtech.jastor.JastorException
pathwayOrderProperty
void addPathwayOrder(PathwayStep pathwayOrder) throws com.ibm.adtech.jastor.JastorException
The
- PathwayStep
to addcom.ibm.adtech.jastor.JastorException
pathwayOrderProperty
PathwayStep addPathwayOrder() throws com.ibm.adtech.jastor.JastorException
PathwayStep
createdcom.ibm.adtech.jastor.JastorException
pathwayOrderProperty
PathwayStep addPathwayOrder(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
PathwayStep
with the factory
and calling addPathwayOrder(fr.curie.BiNoM.pathways.biopax.PathwayStep pathwayOrder)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#PathwayStep. That is, this method
should not be used as a shortcut for creating new objects in the model.The
- om.hp.hpl.jena.rdf.model.Resource
to addcom.ibm.adtech.jastor.JastorException
pathwayOrderProperty
void removePathwayOrder(PathwayStep pathwayOrder) throws com.ibm.adtech.jastor.JastorException
The
- PathwayStep
to removecom.ibm.adtech.jastor.JastorException
pathwayOrderProperty
java.util.Iterator getPathwayComponent_asInteraction() throws com.ibm.adtech.jastor.JastorException
Iterator
of Interaction
com.ibm.adtech.jastor.JastorException
pathwayComponentProperty
void addPathwayComponent(Interaction pathwayComponent) throws com.ibm.adtech.jastor.JastorException
The
- Interaction
to addcom.ibm.adtech.jastor.JastorException
pathwayComponentProperty
Interaction addPathwayComponent_asInteraction() throws com.ibm.adtech.jastor.JastorException
Interaction
createdcom.ibm.adtech.jastor.JastorException
pathwayComponentProperty
Interaction addPathwayComponent_asInteraction(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
Interaction
with the factory
and calling addPathwayComponent(fr.curie.BiNoM.pathways.biopax.Interaction pathwayComponent)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#Interaction. That is, this method
should not be used as a shortcut for creating new objects in the model.The
- om.hp.hpl.jena.rdf.model.Resource
to addcom.ibm.adtech.jastor.JastorException
pathwayComponentProperty
void removePathwayComponent(Interaction pathwayComponent) throws com.ibm.adtech.jastor.JastorException
The
- Interaction
to removecom.ibm.adtech.jastor.JastorException
pathwayComponentProperty
java.util.Iterator getPathwayComponent_asPathway() throws com.ibm.adtech.jastor.JastorException
Iterator
of Pathway
com.ibm.adtech.jastor.JastorException
pathwayComponentProperty
void addPathwayComponent(Pathway pathwayComponent) throws com.ibm.adtech.jastor.JastorException
The
- Pathway
to addcom.ibm.adtech.jastor.JastorException
pathwayComponentProperty
Pathway addPathwayComponent_asPathway() throws com.ibm.adtech.jastor.JastorException
Pathway
createdcom.ibm.adtech.jastor.JastorException
pathwayComponentProperty
Pathway addPathwayComponent_asPathway(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
Pathway
with the factory
and calling addPathwayComponent(fr.curie.BiNoM.pathways.biopax.Pathway pathwayComponent)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#Pathway. That is, this method
should not be used as a shortcut for creating new objects in the model.The
- om.hp.hpl.jena.rdf.model.Resource
to addcom.ibm.adtech.jastor.JastorException
pathwayComponentProperty
void removePathwayComponent(Pathway pathwayComponent) throws com.ibm.adtech.jastor.JastorException
The
- Pathway
to removecom.ibm.adtech.jastor.JastorException
pathwayComponentProperty
BioSource getOrganism() throws com.ibm.adtech.jastor.JastorException
BioSource
com.ibm.adtech.jastor.JastorException
organismProperty
void setOrganism(BioSource organism) throws com.ibm.adtech.jastor.JastorException
{@link
- fr.curie.BiNoM.pathways.biopax.BioSource}com.ibm.adtech.jastor.JastorException
organismProperty
BioSource setOrganism() throws com.ibm.adtech.jastor.JastorException
BioSource
, the created valuecom.ibm.adtech.jastor.JastorException
organismProperty
BioSource setOrganism(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
BioSource
with the factory.
and calling setOrganism(fr.curie.BiNoM.pathways.biopax.BioSource organism)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#BioSource. That is, this method
should not be used as a shortcut for creating new objects in the model.{@link
- com.hp.hpl.jena.rdf.model.Resource} must not be be null.BioSource
, the newly created valuecom.ibm.adtech.jastor.JastorException
organismProperty