public interface DnaRegionReference extends EntityReference
(URI: http://www.biopax.org/release/biopax-level3.owl#DnaRegionReference)
Modifier and Type | Field and Description |
---|---|
static com.hp.hpl.jena.rdf.model.Property |
absoluteRegionProperty
The Jena Property for absoluteRegion
|
static com.hp.hpl.jena.rdf.model.Property |
organismProperty
The Jena Property for organism
|
static com.hp.hpl.jena.rdf.model.Property |
regionTypeProperty
The Jena Property for regionType
|
static com.hp.hpl.jena.rdf.model.Property |
sequenceProperty
The Jena Property for sequence
|
static com.hp.hpl.jena.rdf.model.Property |
subRegionProperty
The Jena Property for subRegion
|
static Resource |
TYPE
The rdf:type for this ontology class
|
entityFeatureProperty, entityReferenceTypeProperty, evidenceProperty, memberEntityReferenceProperty, nameProperty, xrefProperty
commentProperty
Modifier and Type | Method and Description |
---|---|
DnaRegionReference |
addSubRegion_asDnaRegionReference()
Adds an anonymous value for the 'subRegion' property
|
DnaRegionReference |
addSubRegion_asDnaRegionReference(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'subRegion' property.
|
RnaRegionReference |
addSubRegion_asRnaRegionReference()
Adds an anonymous value for the 'subRegion' property
|
RnaRegionReference |
addSubRegion_asRnaRegionReference(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'subRegion' property.
|
void |
addSubRegion(DnaRegionReference subRegion)
Adds a value for the 'subRegion' property
|
void |
addSubRegion(RnaRegionReference subRegion)
Adds a value for the 'subRegion' property
|
SequenceLocation |
getAbsoluteRegion()
Gets the 'absoluteRegion' property value
|
BioSource |
getOrganism()
Gets the 'organism' property value
|
SequenceRegionVocabulary |
getRegionType()
Gets the 'regionType' property value
|
java.lang.String |
getSequence()
Gets the 'sequence' property value
|
java.util.Iterator |
getSubRegion_asDnaRegionReference()
Get an Iterator the 'subRegion' property values.
|
java.util.Iterator |
getSubRegion_asRnaRegionReference()
Get an Iterator the 'subRegion' property values.
|
void |
removeSubRegion(DnaRegionReference subRegion)
Removes a value for the 'subRegion' property.
|
void |
removeSubRegion(RnaRegionReference subRegion)
Removes a value for the 'subRegion' property.
|
SequenceLocation |
setAbsoluteRegion()
Sets the 'absoluteRegion' property value to an anonymous node
|
SequenceLocation |
setAbsoluteRegion(com.hp.hpl.jena.rdf.model.Resource resource)
Sets the 'absoluteRegion' property value to the given resource, and add's rdf:type properties.
|
void |
setAbsoluteRegion(SequenceLocation absoluteRegion)
Sets the 'absoluteRegion' property value
|
BioSource |
setOrganism()
Sets the 'organism' property value to an anonymous node
|
void |
setOrganism(BioSource organism)
Sets the 'organism' property value
|
BioSource |
setOrganism(com.hp.hpl.jena.rdf.model.Resource resource)
Sets the 'organism' property value to the given resource, and add's rdf:type properties.
|
SequenceRegionVocabulary |
setRegionType()
Sets the 'regionType' property value to an anonymous node
|
SequenceRegionVocabulary |
setRegionType(com.hp.hpl.jena.rdf.model.Resource resource)
Sets the 'regionType' property value to the given resource, and add's rdf:type properties.
|
void |
setRegionType(SequenceRegionVocabulary regionType)
Sets the 'regionType' property value
|
void |
setSequence(java.lang.String sequence)
Sets the 'sequence' property value
|
addEntityFeature, addEntityFeature, addEntityFeature, addEvidence, addEvidence, addEvidence, addMemberEntityReference, addMemberEntityReference, addMemberEntityReference, addName, addXref, addXref, addXref, getEntityFeature, getEntityReferenceType, getEvidence, getMemberEntityReference, getName, getXref, removeEntityFeature, removeEvidence, removeMemberEntityReference, removeName, removeXref, setEntityReferenceType, setEntityReferenceType, setEntityReferenceType
addComment, getComment, removeComment
static final Resource TYPE
static final com.hp.hpl.jena.rdf.model.Property sequenceProperty
(URI: http://www.biopax.org/release/biopax-level3.owl#sequence)
static final com.hp.hpl.jena.rdf.model.Property subRegionProperty
(URI: http://www.biopax.org/release/biopax-level3.owl#subRegion)
static final com.hp.hpl.jena.rdf.model.Property regionTypeProperty
(URI: http://www.biopax.org/release/biopax-level3.owl#regionType)
static final com.hp.hpl.jena.rdf.model.Property organismProperty
(URI: http://www.biopax.org/release/biopax-level3.owl#organism)
static final com.hp.hpl.jena.rdf.model.Property absoluteRegionProperty
(URI: http://www.biopax.org/release/biopax-level3.owl#absoluteRegion)
java.lang.String getSequence() throws com.ibm.adtech.jastor.JastorException
String
com.ibm.adtech.jastor.JastorException
sequenceProperty
void setSequence(java.lang.String sequence) throws com.ibm.adtech.jastor.JastorException
{@link
- java.lang.String}com.ibm.adtech.jastor.JastorException
sequenceProperty
java.util.Iterator getSubRegion_asDnaRegionReference() throws com.ibm.adtech.jastor.JastorException
Iterator
of DnaRegionReference
com.ibm.adtech.jastor.JastorException
subRegionProperty
void addSubRegion(DnaRegionReference subRegion) throws com.ibm.adtech.jastor.JastorException
The
- DnaRegionReference
to addcom.ibm.adtech.jastor.JastorException
subRegionProperty
DnaRegionReference addSubRegion_asDnaRegionReference() throws com.ibm.adtech.jastor.JastorException
DnaRegionReference
createdcom.ibm.adtech.jastor.JastorException
subRegionProperty
DnaRegionReference addSubRegion_asDnaRegionReference(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
DnaRegionReference
with the factory
and calling addSubRegion(fr.curie.BiNoM.pathways.biopax.DnaRegionReference subRegion)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#DnaRegionReference. That is, this method
should not be used as a shortcut for creating new objects in the model.The
- om.hp.hpl.jena.rdf.model.Resource
to addcom.ibm.adtech.jastor.JastorException
subRegionProperty
void removeSubRegion(DnaRegionReference subRegion) throws com.ibm.adtech.jastor.JastorException
The
- DnaRegionReference
to removecom.ibm.adtech.jastor.JastorException
subRegionProperty
java.util.Iterator getSubRegion_asRnaRegionReference() throws com.ibm.adtech.jastor.JastorException
Iterator
of RnaRegionReference
com.ibm.adtech.jastor.JastorException
subRegionProperty
void addSubRegion(RnaRegionReference subRegion) throws com.ibm.adtech.jastor.JastorException
The
- RnaRegionReference
to addcom.ibm.adtech.jastor.JastorException
subRegionProperty
RnaRegionReference addSubRegion_asRnaRegionReference() throws com.ibm.adtech.jastor.JastorException
RnaRegionReference
createdcom.ibm.adtech.jastor.JastorException
subRegionProperty
RnaRegionReference addSubRegion_asRnaRegionReference(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
RnaRegionReference
with the factory
and calling addSubRegion(fr.curie.BiNoM.pathways.biopax.RnaRegionReference subRegion)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#RnaRegionReference. That is, this method
should not be used as a shortcut for creating new objects in the model.The
- om.hp.hpl.jena.rdf.model.Resource
to addcom.ibm.adtech.jastor.JastorException
subRegionProperty
void removeSubRegion(RnaRegionReference subRegion) throws com.ibm.adtech.jastor.JastorException
The
- RnaRegionReference
to removecom.ibm.adtech.jastor.JastorException
subRegionProperty
SequenceRegionVocabulary getRegionType() throws com.ibm.adtech.jastor.JastorException
SequenceRegionVocabulary
com.ibm.adtech.jastor.JastorException
regionTypeProperty
void setRegionType(SequenceRegionVocabulary regionType) throws com.ibm.adtech.jastor.JastorException
{@link
- fr.curie.BiNoM.pathways.biopax.SequenceRegionVocabulary}com.ibm.adtech.jastor.JastorException
regionTypeProperty
SequenceRegionVocabulary setRegionType() throws com.ibm.adtech.jastor.JastorException
SequenceRegionVocabulary
, the created valuecom.ibm.adtech.jastor.JastorException
regionTypeProperty
SequenceRegionVocabulary setRegionType(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
SequenceRegionVocabulary
with the factory.
and calling setRegionType(fr.curie.BiNoM.pathways.biopax.SequenceRegionVocabulary regionType)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#SequenceRegionVocabulary. That is, this method
should not be used as a shortcut for creating new objects in the model.{@link
- com.hp.hpl.jena.rdf.model.Resource} must not be be null.SequenceRegionVocabulary
, the newly created valuecom.ibm.adtech.jastor.JastorException
regionTypeProperty
BioSource getOrganism() throws com.ibm.adtech.jastor.JastorException
BioSource
com.ibm.adtech.jastor.JastorException
organismProperty
void setOrganism(BioSource organism) throws com.ibm.adtech.jastor.JastorException
{@link
- fr.curie.BiNoM.pathways.biopax.BioSource}com.ibm.adtech.jastor.JastorException
organismProperty
BioSource setOrganism() throws com.ibm.adtech.jastor.JastorException
BioSource
, the created valuecom.ibm.adtech.jastor.JastorException
organismProperty
BioSource setOrganism(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
BioSource
with the factory.
and calling setOrganism(fr.curie.BiNoM.pathways.biopax.BioSource organism)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#BioSource. That is, this method
should not be used as a shortcut for creating new objects in the model.{@link
- com.hp.hpl.jena.rdf.model.Resource} must not be be null.BioSource
, the newly created valuecom.ibm.adtech.jastor.JastorException
organismProperty
SequenceLocation getAbsoluteRegion() throws com.ibm.adtech.jastor.JastorException
SequenceLocation
com.ibm.adtech.jastor.JastorException
absoluteRegionProperty
void setAbsoluteRegion(SequenceLocation absoluteRegion) throws com.ibm.adtech.jastor.JastorException
{@link
- fr.curie.BiNoM.pathways.biopax.SequenceLocation}com.ibm.adtech.jastor.JastorException
absoluteRegionProperty
SequenceLocation setAbsoluteRegion() throws com.ibm.adtech.jastor.JastorException
SequenceLocation
, the created valuecom.ibm.adtech.jastor.JastorException
absoluteRegionProperty
SequenceLocation setAbsoluteRegion(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
SequenceLocation
with the factory.
and calling setAbsoluteRegion(fr.curie.BiNoM.pathways.biopax.SequenceLocation absoluteRegion)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#SequenceLocation. That is, this method
should not be used as a shortcut for creating new objects in the model.{@link
- com.hp.hpl.jena.rdf.model.Resource} must not be be null.SequenceLocation
, the newly created valuecom.ibm.adtech.jastor.JastorException
absoluteRegionProperty