public class OFTENAnalysis
extends java.lang.Object
Modifier and Type | Field and Description |
---|---|
Graph |
extractedNetwork |
java.lang.String |
fileName |
Graph |
hprd |
java.util.Vector<java.lang.String> |
listOfRankedGenes |
int |
numberOfPermutationsForSizeTest |
java.util.Vector<java.lang.String> |
rankedGeneList |
SubnetworkProperties |
snp |
float |
thresholdIntersectionOfGraphs |
float |
thresholdSelectionConnectedComponents |
Constructor and Description |
---|
OFTENAnalysis() |
Modifier and Type | Method and Description |
---|---|
void |
extractSubnetwork(int ngenes) |
Graph |
intersectGraphs(java.util.Vector<Graph> graphs) |
void |
loadHPRD(java.lang.String pathToHPRD) |
void |
loadRandkedGeneList(java.lang.String fileName) |
static void |
main(java.lang.String[] args) |
void |
makeMetaOFTENFromRandkedGeneListFiles(java.util.Vector<java.lang.String> listOfFileNames,
int[] valuesToTest) |
void |
makeOFTENAnalysis(int[] valuesToTest) |
public Graph hprd
public java.util.Vector<java.lang.String> listOfRankedGenes
public Graph extractedNetwork
public java.util.Vector<java.lang.String> rankedGeneList
public SubnetworkProperties snp
public int numberOfPermutationsForSizeTest
public float thresholdSelectionConnectedComponents
public float thresholdIntersectionOfGraphs
public java.lang.String fileName
public static void main(java.lang.String[] args)
public void makeOFTENAnalysis(int[] valuesToTest) throws java.lang.Exception
java.lang.Exception
public void loadHPRD(java.lang.String pathToHPRD) throws java.lang.Exception
java.lang.Exception
public void loadRandkedGeneList(java.lang.String fileName)
public void extractSubnetwork(int ngenes)
public void makeMetaOFTENFromRandkedGeneListFiles(java.util.Vector<java.lang.String> listOfFileNames, int[] valuesToTest) throws java.lang.Exception
java.lang.Exception