public class testEwingNetwork
extends java.lang.Object
Modifier and Type | Field and Description |
---|---|
static BioPAX |
biopax |
static java.lang.String |
ChemType |
static java.lang.String |
Comments |
static java.lang.String |
Confidence |
static java.lang.String |
Delay |
static java.util.HashMap |
families |
static java.util.Vector |
molecules |
static java.util.HashMap |
nameEntity |
static java.util.HashMap |
nameFeatures |
static java.util.HashMap |
nameParticipant |
static java.util.HashMap |
nameReactions |
static java.util.HashMap |
phenotypes |
static java.lang.String |
pub1 |
static java.lang.String |
pub2 |
static java.util.HashMap |
publications |
static java.lang.String |
Tissue |
static java.util.Vector |
tissueTypes |
Constructor and Description |
---|
testEwingNetwork() |
Modifier and Type | Method and Description |
---|---|
static void |
addComplex(java.lang.String name) |
static void |
addElementaryReaction(java.lang.String id,
java.lang.String link) |
static void |
addFamily(java.lang.String name) |
static void |
addMolecule(java.lang.String name) |
static void |
addPathwayInfluence(java.lang.String id,
java.lang.String link) |
static void |
addPhenotype(java.lang.String name) |
static void |
addPublication(biochemicalReaction r,
java.lang.String pub) |
static void |
addReaction(java.lang.String id,
java.lang.String link) |
static void |
extractReactionParts(java.lang.String link,
java.lang.StringBuffer pleft,
java.lang.StringBuffer pright,
java.lang.StringBuffer activation) |
static void |
findAllMembers(java.lang.String sname,
java.util.Vector members) |
static void |
main(java.lang.String[] args) |
public static BioPAX biopax
public static java.util.HashMap nameEntity
public static java.util.HashMap nameParticipant
public static java.util.HashMap nameFeatures
public static java.util.HashMap nameReactions
public static java.util.HashMap families
public static java.util.HashMap phenotypes
public static java.util.Vector molecules
public static java.util.Vector tissueTypes
public static java.util.HashMap publications
public static java.lang.String pub1
public static java.lang.String pub2
public static java.lang.String ChemType
public static java.lang.String Delay
public static java.lang.String Confidence
public static java.lang.String Comments
public static java.lang.String Tissue
public static void main(java.lang.String[] args)
public static void addMolecule(java.lang.String name) throws java.lang.Exception
java.lang.Exception
public static void addComplex(java.lang.String name) throws java.lang.Exception
java.lang.Exception
public static void addReaction(java.lang.String id, java.lang.String link) throws java.lang.Exception
java.lang.Exception
public static void addPathwayInfluence(java.lang.String id, java.lang.String link) throws java.lang.Exception
java.lang.Exception
public static void extractReactionParts(java.lang.String link, java.lang.StringBuffer pleft, java.lang.StringBuffer pright, java.lang.StringBuffer activation)
public static void addElementaryReaction(java.lang.String id, java.lang.String link) throws java.lang.Exception
java.lang.Exception
public static void addPublication(biochemicalReaction r, java.lang.String pub) throws java.lang.Exception
java.lang.Exception
public static void addPhenotype(java.lang.String name) throws java.lang.Exception
java.lang.Exception
public static void addFamily(java.lang.String name) throws java.lang.Exception
java.lang.Exception
public static void findAllMembers(java.lang.String sname, java.util.Vector members) throws java.lang.Exception
java.lang.Exception