public class CellDesignerGenerator
extends java.lang.Object
Constructor and Description |
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CellDesignerGenerator() |
Modifier and Type | Method and Description |
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void |
createCelldesignerSpecies(java.lang.String id,
java.lang.String complex_id,
java.lang.String name,
java.lang.String entity_id,
java.lang.String classname) |
CelldesignerComplexSpeciesAliasDocument.CelldesignerComplexSpeciesAlias |
createComplexSpeciesAlias(java.lang.String id,
java.lang.String sp_id,
SpeciesStructure ss,
int x,
int y) |
void |
createNewCellDesignerFile(java.lang.String id,
int sizeX,
int sizeY) |
CompartmentDocument.Compartment |
createNewCompartment(java.lang.String id,
java.lang.String name) |
CelldesignerProteinDocument.CelldesignerProtein |
createNewProtein(java.lang.String id,
java.lang.String name) |
CelldesignerSpeciesAliasDocument.CelldesignerSpeciesAlias |
createSpeciesAlias(java.lang.String id,
java.lang.String sp_id,
float x,
float y) |
SpeciesDocument.Species |
createSpeciesFromString(java.lang.String id,
java.lang.String name,
java.lang.String structuredString,
int x,
int y) |
static void |
main(java.lang.String[] args) |
public static void main(java.lang.String[] args)
public void createNewCellDesignerFile(java.lang.String id, int sizeX, int sizeY) throws java.lang.Exception
java.lang.Exception
public SpeciesDocument.Species createSpeciesFromString(java.lang.String id, java.lang.String name, java.lang.String structuredString, int x, int y)
public CompartmentDocument.Compartment createNewCompartment(java.lang.String id, java.lang.String name)
public CelldesignerComplexSpeciesAliasDocument.CelldesignerComplexSpeciesAlias createComplexSpeciesAlias(java.lang.String id, java.lang.String sp_id, SpeciesStructure ss, int x, int y)
public CelldesignerSpeciesAliasDocument.CelldesignerSpeciesAlias createSpeciesAlias(java.lang.String id, java.lang.String sp_id, float x, float y)
public CelldesignerProteinDocument.CelldesignerProtein createNewProtein(java.lang.String id, java.lang.String name)
public void createCelldesignerSpecies(java.lang.String id, java.lang.String complex_id, java.lang.String name, java.lang.String entity_id, java.lang.String classname)