public interface ProteinReference extends EntityReference
(URI: http://www.biopax.org/release/biopax-level3.owl#ProteinReference)
Modifier and Type | Field and Description |
---|---|
static com.hp.hpl.jena.rdf.model.Property |
organismProperty
The Jena Property for organism
|
static com.hp.hpl.jena.rdf.model.Property |
sequenceProperty
The Jena Property for sequence
|
static Resource |
TYPE
The rdf:type for this ontology class
|
entityFeatureProperty, entityReferenceTypeProperty, evidenceProperty, memberEntityReferenceProperty, nameProperty, xrefProperty
commentProperty
Modifier and Type | Method and Description |
---|---|
ProteinReference |
addMemberEntityReference_asProteinReference()
Adds an anonymous value for the 'memberEntityReference' property
|
ProteinReference |
addMemberEntityReference_asProteinReference(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'memberEntityReference' property.
|
void |
addMemberEntityReference(ProteinReference memberEntityReference)
Adds a value for the 'memberEntityReference' property
|
java.util.Iterator |
getMemberEntityReference_asProteinReference()
Get an Iterator the 'memberEntityReference' property values.
|
BioSource |
getOrganism()
Gets the 'organism' property value
|
java.lang.String |
getSequence()
Gets the 'sequence' property value
|
void |
removeMemberEntityReference(ProteinReference memberEntityReference)
Removes a value for the 'memberEntityReference' property.
|
BioSource |
setOrganism()
Sets the 'organism' property value to an anonymous node
|
void |
setOrganism(BioSource organism)
Sets the 'organism' property value
|
BioSource |
setOrganism(com.hp.hpl.jena.rdf.model.Resource resource)
Sets the 'organism' property value to the given resource, and add's rdf:type properties.
|
void |
setSequence(java.lang.String sequence)
Sets the 'sequence' property value
|
addEntityFeature, addEntityFeature, addEntityFeature, addEvidence, addEvidence, addEvidence, addMemberEntityReference, addMemberEntityReference, addName, addXref, addXref, addXref, getEntityFeature, getEntityReferenceType, getEvidence, getMemberEntityReference, getName, getXref, removeEntityFeature, removeEvidence, removeMemberEntityReference, removeName, removeXref, setEntityReferenceType, setEntityReferenceType, setEntityReferenceType
addComment, getComment, removeComment
static final Resource TYPE
static final com.hp.hpl.jena.rdf.model.Property sequenceProperty
(URI: http://www.biopax.org/release/biopax-level3.owl#sequence)
static final com.hp.hpl.jena.rdf.model.Property organismProperty
(URI: http://www.biopax.org/release/biopax-level3.owl#organism)
java.util.Iterator getMemberEntityReference_asProteinReference() throws com.ibm.adtech.jastor.JastorException
Iterator
of ProteinReference
com.ibm.adtech.jastor.JastorException
EntityReference.memberEntityReferenceProperty
void addMemberEntityReference(ProteinReference memberEntityReference) throws com.ibm.adtech.jastor.JastorException
addMemberEntityReference
in interface EntityReference
The
- ProteinReference
to addcom.ibm.adtech.jastor.JastorException
EntityReference.memberEntityReferenceProperty
ProteinReference addMemberEntityReference_asProteinReference() throws com.ibm.adtech.jastor.JastorException
ProteinReference
createdcom.ibm.adtech.jastor.JastorException
EntityReference.memberEntityReferenceProperty
ProteinReference addMemberEntityReference_asProteinReference(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
ProteinReference
with the factory
and calling addMemberEntityReference(fr.curie.BiNoM.pathways.biopax.ProteinReference memberEntityReference)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#ProteinReference. That is, this method
should not be used as a shortcut for creating new objects in the model.The
- om.hp.hpl.jena.rdf.model.Resource
to addcom.ibm.adtech.jastor.JastorException
EntityReference.memberEntityReferenceProperty
void removeMemberEntityReference(ProteinReference memberEntityReference) throws com.ibm.adtech.jastor.JastorException
The
- ProteinReference
to removecom.ibm.adtech.jastor.JastorException
EntityReference.memberEntityReferenceProperty
java.lang.String getSequence() throws com.ibm.adtech.jastor.JastorException
String
com.ibm.adtech.jastor.JastorException
sequenceProperty
void setSequence(java.lang.String sequence) throws com.ibm.adtech.jastor.JastorException
{@link
- java.lang.String}com.ibm.adtech.jastor.JastorException
sequenceProperty
BioSource getOrganism() throws com.ibm.adtech.jastor.JastorException
BioSource
com.ibm.adtech.jastor.JastorException
organismProperty
void setOrganism(BioSource organism) throws com.ibm.adtech.jastor.JastorException
{@link
- fr.curie.BiNoM.pathways.biopax.BioSource}com.ibm.adtech.jastor.JastorException
organismProperty
BioSource setOrganism() throws com.ibm.adtech.jastor.JastorException
BioSource
, the created valuecom.ibm.adtech.jastor.JastorException
organismProperty
BioSource setOrganism(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
BioSource
with the factory.
and calling setOrganism(fr.curie.BiNoM.pathways.biopax.BioSource organism)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#BioSource. That is, this method
should not be used as a shortcut for creating new objects in the model.{@link
- com.hp.hpl.jena.rdf.model.Resource} must not be be null.BioSource
, the newly created valuecom.ibm.adtech.jastor.JastorException
organismProperty