Class | Description |
---|---|
BioPAXToCellDesignerConverter | |
BioPAXToCytoscapeConverter |
Converts BioPAX (represented by BioPAX object) to XGMML (represented by GraphDocument object)
|
BioPAXToCytoscapeConverter.Graph |
Little auxiliary container for BioPAX and GraphDocument object
|
BioPAXToCytoscapeConverter.Option |
Set of conversion options
|
BioPAXToSBMLConverter |
Converts BioPAX (represented by BioPAX object) to SBML (represented by org.sbml.x2001.ns.celldesigner.SbmlDocument object)
|
CellDesignerColorProteins | |
CellDesignerColorSpecies | |
CellDesignerToBioPAXConverter |
Implementation of converter from CellDesigner 3.* file
to BioPAX
|
CellDesignerToCytoscapeConverter |
Direct converter from CellDesigner to Cytoscape.
|
CellDesignerToCytoscapeConverter.Graph |
Simple container for GraphDocument and SbmlDocument objects
|
CSMLToCytoscapeConverter | |
CytoscapeToBioPAXConverter |
Deprecated class.
|
CytoscapeToCellDesignerConverter |
Class used to export a part of CellDesigner file, using only species and reactions
visualized in the current Cytoscape network
|
parseBioPAX | |
parseCellDesigner |
Utility class for listing some CellDesigner information as a readable text
|
SimpleTextInfluenceToBioPAX |