public interface TemplateReaction extends Interaction
(URI: http://www.biopax.org/release/biopax-level3.owl#TemplateReaction)
Modifier and Type | Field and Description |
---|---|
static com.hp.hpl.jena.rdf.model.Property |
productProperty
The Jena Property for product
|
static com.hp.hpl.jena.rdf.model.Property |
templateDirectionProperty
The Jena Property for templateDirection
|
static com.hp.hpl.jena.rdf.model.Property |
templateProperty
The Jena Property for template
|
static Resource |
TYPE
The rdf:type for this ontology class
|
interactionTypeProperty, participantProperty
availabilityProperty, commentProperty, dataSourceProperty, evidenceProperty, nameProperty, xrefProperty
Modifier and Type | Method and Description |
---|---|
PhysicalEntity |
addParticipant_asPhysicalEntity()
Adds an anonymous value for the 'participant' property
|
PhysicalEntity |
addParticipant_asPhysicalEntity(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'participant' property.
|
void |
addParticipant(PhysicalEntity participant)
Adds a value for the 'participant' property
|
Dna |
addProduct_asDna()
Adds an anonymous value for the 'product' property
|
Dna |
addProduct_asDna(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'product' property.
|
Protein |
addProduct_asProtein()
Adds an anonymous value for the 'product' property
|
Protein |
addProduct_asProtein(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'product' property.
|
Rna |
addProduct_asRna()
Adds an anonymous value for the 'product' property
|
Rna |
addProduct_asRna(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'product' property.
|
void |
addProduct(Dna product)
Adds a value for the 'product' property
|
void |
addProduct(Protein product)
Adds a value for the 'product' property
|
void |
addProduct(Rna product)
Adds a value for the 'product' property
|
java.util.Iterator |
getParticipant_asPhysicalEntity()
Get an Iterator the 'participant' property values.
|
java.util.Iterator |
getProduct_asDna()
Get an Iterator the 'product' property values.
|
java.util.Iterator |
getProduct_asProtein()
Get an Iterator the 'product' property values.
|
java.util.Iterator |
getProduct_asRna()
Get an Iterator the 'product' property values.
|
Dna |
getTemplate_asDna()
Gets the 'template' property value
|
DnaRegion |
getTemplate_asDnaRegion()
Gets the 'template' property value
|
Rna |
getTemplate_asRna()
Gets the 'template' property value
|
RnaRegion |
getTemplate_asRnaRegion()
Gets the 'template' property value
|
java.lang.String |
getTemplateDirection()
Gets the 'templateDirection' property value
|
void |
removeParticipant(PhysicalEntity participant)
Removes a value for the 'participant' property.
|
void |
removeProduct(Dna product)
Removes a value for the 'product' property.
|
void |
removeProduct(Protein product)
Removes a value for the 'product' property.
|
void |
removeProduct(Rna product)
Removes a value for the 'product' property.
|
Dna |
setTemplate_asDna()
Sets the 'template' property value to an anonymous node
|
Dna |
setTemplate_asDna(com.hp.hpl.jena.rdf.model.Resource resource)
Sets the 'template' property value to the given resource, and add's rdf:type properties.
|
DnaRegion |
setTemplate_asDnaRegion()
Sets the 'template' property value to an anonymous node
|
DnaRegion |
setTemplate_asDnaRegion(com.hp.hpl.jena.rdf.model.Resource resource)
Sets the 'template' property value to the given resource, and add's rdf:type properties.
|
Rna |
setTemplate_asRna()
Sets the 'template' property value to an anonymous node
|
Rna |
setTemplate_asRna(com.hp.hpl.jena.rdf.model.Resource resource)
Sets the 'template' property value to the given resource, and add's rdf:type properties.
|
RnaRegion |
setTemplate_asRnaRegion()
Sets the 'template' property value to an anonymous node
|
RnaRegion |
setTemplate_asRnaRegion(com.hp.hpl.jena.rdf.model.Resource resource)
Sets the 'template' property value to the given resource, and add's rdf:type properties.
|
void |
setTemplate(Dna template)
Sets the 'template' property value
|
void |
setTemplate(DnaRegion template)
Sets the 'template' property value
|
void |
setTemplate(Rna template)
Sets the 'template' property value
|
void |
setTemplate(RnaRegion template)
Sets the 'template' property value
|
void |
setTemplateDirection(java.lang.String templateDirection)
Sets the 'templateDirection' property value
|
addParticipant, addParticipant, getInteractionType, getParticipant, removeParticipant, setInteractionType, setInteractionType, setInteractionType
addAvailability, addComment, addDataSource, addDataSource, addDataSource, addEvidence, addEvidence, addEvidence, addName, addXref, addXref, addXref, getAvailability, getComment, getDataSource, getEvidence, getName, getXref, removeAvailability, removeComment, removeDataSource, removeEvidence, removeName, removeXref
static final Resource TYPE
static final com.hp.hpl.jena.rdf.model.Property templateDirectionProperty
(URI: http://www.biopax.org/release/biopax-level3.owl#templateDirection)
static final com.hp.hpl.jena.rdf.model.Property productProperty
(URI: http://www.biopax.org/release/biopax-level3.owl#product)
static final com.hp.hpl.jena.rdf.model.Property templateProperty
(URI: http://www.biopax.org/release/biopax-level3.owl#template)
java.util.Iterator getParticipant_asPhysicalEntity() throws com.ibm.adtech.jastor.JastorException
Iterator
of PhysicalEntity
com.ibm.adtech.jastor.JastorException
Interaction.participantProperty
void addParticipant(PhysicalEntity participant) throws com.ibm.adtech.jastor.JastorException
addParticipant
in interface Interaction
The
- PhysicalEntity
to addcom.ibm.adtech.jastor.JastorException
Interaction.participantProperty
PhysicalEntity addParticipant_asPhysicalEntity() throws com.ibm.adtech.jastor.JastorException
PhysicalEntity
createdcom.ibm.adtech.jastor.JastorException
Interaction.participantProperty
PhysicalEntity addParticipant_asPhysicalEntity(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
PhysicalEntity
with the factory
and calling addParticipant(fr.curie.BiNoM.pathways.biopax.PhysicalEntity participant)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#PhysicalEntity. That is, this method
should not be used as a shortcut for creating new objects in the model.The
- om.hp.hpl.jena.rdf.model.Resource
to addcom.ibm.adtech.jastor.JastorException
Interaction.participantProperty
void removeParticipant(PhysicalEntity participant) throws com.ibm.adtech.jastor.JastorException
The
- PhysicalEntity
to removecom.ibm.adtech.jastor.JastorException
Interaction.participantProperty
java.lang.String getTemplateDirection() throws com.ibm.adtech.jastor.JastorException
String
com.ibm.adtech.jastor.JastorException
templateDirectionProperty
void setTemplateDirection(java.lang.String templateDirection) throws com.ibm.adtech.jastor.JastorException
{@link
- java.lang.String}com.ibm.adtech.jastor.JastorException
templateDirectionProperty
java.util.Iterator getProduct_asDna() throws com.ibm.adtech.jastor.JastorException
Iterator
of Dna
com.ibm.adtech.jastor.JastorException
productProperty
void addProduct(Dna product) throws com.ibm.adtech.jastor.JastorException
The
- Dna
to addcom.ibm.adtech.jastor.JastorException
productProperty
Dna addProduct_asDna() throws com.ibm.adtech.jastor.JastorException
Dna
createdcom.ibm.adtech.jastor.JastorException
productProperty
Dna addProduct_asDna(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
Dna
with the factory
and calling addProduct(fr.curie.BiNoM.pathways.biopax.Dna product)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#Dna. That is, this method
should not be used as a shortcut for creating new objects in the model.The
- om.hp.hpl.jena.rdf.model.Resource
to addcom.ibm.adtech.jastor.JastorException
productProperty
void removeProduct(Dna product) throws com.ibm.adtech.jastor.JastorException
The
- Dna
to removecom.ibm.adtech.jastor.JastorException
productProperty
java.util.Iterator getProduct_asProtein() throws com.ibm.adtech.jastor.JastorException
Iterator
of Protein
com.ibm.adtech.jastor.JastorException
productProperty
void addProduct(Protein product) throws com.ibm.adtech.jastor.JastorException
The
- Protein
to addcom.ibm.adtech.jastor.JastorException
productProperty
Protein addProduct_asProtein() throws com.ibm.adtech.jastor.JastorException
Protein
createdcom.ibm.adtech.jastor.JastorException
productProperty
Protein addProduct_asProtein(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
Protein
with the factory
and calling addProduct(fr.curie.BiNoM.pathways.biopax.Protein product)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#Protein. That is, this method
should not be used as a shortcut for creating new objects in the model.The
- om.hp.hpl.jena.rdf.model.Resource
to addcom.ibm.adtech.jastor.JastorException
productProperty
void removeProduct(Protein product) throws com.ibm.adtech.jastor.JastorException
The
- Protein
to removecom.ibm.adtech.jastor.JastorException
productProperty
java.util.Iterator getProduct_asRna() throws com.ibm.adtech.jastor.JastorException
Iterator
of Rna
com.ibm.adtech.jastor.JastorException
productProperty
void addProduct(Rna product) throws com.ibm.adtech.jastor.JastorException
The
- Rna
to addcom.ibm.adtech.jastor.JastorException
productProperty
Rna addProduct_asRna() throws com.ibm.adtech.jastor.JastorException
Rna
createdcom.ibm.adtech.jastor.JastorException
productProperty
Rna addProduct_asRna(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
Rna
with the factory
and calling addProduct(fr.curie.BiNoM.pathways.biopax.Rna product)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#Rna. That is, this method
should not be used as a shortcut for creating new objects in the model.The
- om.hp.hpl.jena.rdf.model.Resource
to addcom.ibm.adtech.jastor.JastorException
productProperty
void removeProduct(Rna product) throws com.ibm.adtech.jastor.JastorException
The
- Rna
to removecom.ibm.adtech.jastor.JastorException
productProperty
Dna getTemplate_asDna() throws com.ibm.adtech.jastor.JastorException
Dna
com.ibm.adtech.jastor.JastorException
templateProperty
void setTemplate(Dna template) throws com.ibm.adtech.jastor.JastorException
{@link
- fr.curie.BiNoM.pathways.biopax.Dna}com.ibm.adtech.jastor.JastorException
templateProperty
Dna setTemplate_asDna() throws com.ibm.adtech.jastor.JastorException
Dna
, the created valuecom.ibm.adtech.jastor.JastorException
templateProperty
Dna setTemplate_asDna(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
Dna
with the factory.
and calling setTemplate(fr.curie.BiNoM.pathways.biopax.Dna template)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#Dna. That is, this method
should not be used as a shortcut for creating new objects in the model.{@link
- com.hp.hpl.jena.rdf.model.Resource} must not be be null.Dna
, the newly created valuecom.ibm.adtech.jastor.JastorException
templateProperty
DnaRegion getTemplate_asDnaRegion() throws com.ibm.adtech.jastor.JastorException
DnaRegion
com.ibm.adtech.jastor.JastorException
templateProperty
void setTemplate(DnaRegion template) throws com.ibm.adtech.jastor.JastorException
{@link
- fr.curie.BiNoM.pathways.biopax.DnaRegion}com.ibm.adtech.jastor.JastorException
templateProperty
DnaRegion setTemplate_asDnaRegion() throws com.ibm.adtech.jastor.JastorException
DnaRegion
, the created valuecom.ibm.adtech.jastor.JastorException
templateProperty
DnaRegion setTemplate_asDnaRegion(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
DnaRegion
with the factory.
and calling setTemplate(fr.curie.BiNoM.pathways.biopax.DnaRegion template)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#DnaRegion. That is, this method
should not be used as a shortcut for creating new objects in the model.{@link
- com.hp.hpl.jena.rdf.model.Resource} must not be be null.DnaRegion
, the newly created valuecom.ibm.adtech.jastor.JastorException
templateProperty
Rna getTemplate_asRna() throws com.ibm.adtech.jastor.JastorException
Rna
com.ibm.adtech.jastor.JastorException
templateProperty
void setTemplate(Rna template) throws com.ibm.adtech.jastor.JastorException
{@link
- fr.curie.BiNoM.pathways.biopax.Rna}com.ibm.adtech.jastor.JastorException
templateProperty
Rna setTemplate_asRna() throws com.ibm.adtech.jastor.JastorException
Rna
, the created valuecom.ibm.adtech.jastor.JastorException
templateProperty
Rna setTemplate_asRna(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
Rna
with the factory.
and calling setTemplate(fr.curie.BiNoM.pathways.biopax.Rna template)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#Rna. That is, this method
should not be used as a shortcut for creating new objects in the model.{@link
- com.hp.hpl.jena.rdf.model.Resource} must not be be null.Rna
, the newly created valuecom.ibm.adtech.jastor.JastorException
templateProperty
RnaRegion getTemplate_asRnaRegion() throws com.ibm.adtech.jastor.JastorException
RnaRegion
com.ibm.adtech.jastor.JastorException
templateProperty
void setTemplate(RnaRegion template) throws com.ibm.adtech.jastor.JastorException
{@link
- fr.curie.BiNoM.pathways.biopax.RnaRegion}com.ibm.adtech.jastor.JastorException
templateProperty
RnaRegion setTemplate_asRnaRegion() throws com.ibm.adtech.jastor.JastorException
RnaRegion
, the created valuecom.ibm.adtech.jastor.JastorException
templateProperty
RnaRegion setTemplate_asRnaRegion(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
RnaRegion
with the factory.
and calling setTemplate(fr.curie.BiNoM.pathways.biopax.RnaRegion template)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#RnaRegion. That is, this method
should not be used as a shortcut for creating new objects in the model.{@link
- com.hp.hpl.jena.rdf.model.Resource} must not be be null.RnaRegion
, the newly created valuecom.ibm.adtech.jastor.JastorException
templateProperty