public class Transpath
extends java.lang.Object
Modifier and Type | Field and Description |
---|---|
java.util.HashMap |
annotationHash |
NetworkDocument |
annotations |
BioPAX |
biopax |
java.util.HashMap |
entities |
static int |
MOLECULAR_EVIDENCE |
static int |
moleculeEnd |
java.util.HashMap |
moleculeHash |
static int |
moleculeStart |
NetworkDocument |
network |
static int |
PATHWAY_STEP |
static int |
SEMANTIC |
java.util.Vector |
speciesFilter |
int |
typeOfReactionExtraction |
Constructor and Description |
---|
Transpath() |
Modifier and Type | Method and Description |
---|---|
void |
initializeModel() |
void |
loadFromFile(java.lang.String fn) |
public NetworkDocument network
public NetworkDocument annotations
public java.util.HashMap annotationHash
public BioPAX biopax
public java.util.HashMap entities
public java.util.HashMap moleculeHash
public java.util.Vector speciesFilter
public int typeOfReactionExtraction
public static int MOLECULAR_EVIDENCE
public static int PATHWAY_STEP
public static int SEMANTIC
public static int moleculeStart
public static int moleculeEnd