public class BioPAXImportTask extends BioPAXImportBaseTask implements AbstractTask
applyLayout, bioPAXAlgos, bioPAXName, bioPAXOption, file, url
Constructor and Description |
---|
BioPAXImportTask(java.io.File file,
java.net.URL url,
java.lang.String name,
int[] algos,
BioPAXToCytoscapeConverter.Option option,
boolean applyLayout) |
Modifier and Type | Method and Description |
---|---|
void |
execute() |
CyNetwork |
getCyNetwork() |
java.lang.String |
getTitle() |
void |
halt() |
void |
run() |
void |
setTaskMonitor(TaskMonitor taskMonitor) |
makeGraph, makeName
public BioPAXImportTask(java.io.File file, java.net.URL url, java.lang.String name, int[] algos, BioPAXToCytoscapeConverter.Option option, boolean applyLayout)
public void halt()
public void setTaskMonitor(TaskMonitor taskMonitor) throws java.lang.IllegalThreadStateException
java.lang.IllegalThreadStateException
public java.lang.String getTitle()
public CyNetwork getCyNetwork()
public void execute()
execute
in interface AbstractTask
public void run()