CalcCentrality |
|
CalcCentralityTask |
|
ClusterNetworks |
|
ClusterNetworksTask |
|
ClusterNetworksTaskFactory |
|
ConnectedComponents |
|
ConnectedComponentsTask |
|
ConvertReactionNetworkToEntityNetwork |
|
ConvertReactionNetworkToEntityNetworkTask |
|
ConvertToUndirectedGraph |
|
ConvertToUndirectedGraphTask |
|
createNeighborhoodSets |
|
createNeighborhoodSetsDialog |
|
CycleDecomposition |
|
CycleDecompositionTask |
|
EdgesFromOtherNetwork |
|
EdgesFromOtherNetworkDialog |
|
EdgesFromOtherNetworkTask |
|
ExcludeIntermediateNodes |
|
ExcludeIntermediateNodesTask |
|
ExcludeIntermediateNodesTaskFactory |
|
ExtractReactionNetwork |
|
ExtractReactionNetworkTask |
|
ExtractSubnetwork |
|
ExtractSubnetworkDialog |
|
ExtractSubnetworkTask |
|
IndexPathAnalysisDialog |
|
IndexPathAnalysisTask |
|
LinearizeNetwork |
|
LinearizeNetworkTask |
|
MaterialComponents |
|
MaterialComponentsTask |
|
ModularView |
|
ModularViewTask |
|
ModularViewTaskFactory |
|
MonoMolecularReactionsAsEdges |
|
MonoMolecularReactionsAsEdgesTask |
|
OptimalCutSetAnalyzer |
Root class for the optimal intervention set analysis.
|
OptimalCutSetAnalyzerDialog |
Graphical interface for the input parameters of the Optimal Intervention Set algorithm.
|
OptimalCutSetAnalyzerTask |
|
OptimalCutSetGenesDialog |
Paste box for a list of items to be selected in a JList.
|
OptimalCutSetReportDialog |
A simple dialog window to show the optimal intervention set search report.
|
OptimalCutSetVisuDialog |
Dialog for setting options for the visualization of optimal intervention sets in Cytoscape graphs.
|
PathAnalysis |
|
PathAnalysisDialog |
|
PathAnalysisTask |
|
PathConsistencyAnalyzer |
|
PathConsistencyAnalyzerBootstrapDialog |
|
PathConsistencyAnalyzerBootstrapTask |
|
PathConsistencyAnalyzerDialog |
|
PathConsistencyAnalyzerPathDialog |
|
PathConsistencyAnalyzerReportDialog |
Report dialog box for optimal intervention set results.
|
PathConsistencyAnalyzerTask |
|
PruneGraph |
|
PruneGraphTask |
|
StronglyConnectedComponents |
|
StronglyConnectedComponentsTask |
|