public class NestUtils
extends java.lang.Object
Constructor and Description |
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NestUtils() |
Modifier and Type | Method and Description |
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static CyNetwork |
createNestNetwork(java.util.ArrayList<java.lang.String> networksToNest,
java.util.TreeMap<java.lang.String,CyNetwork> networks) |
static void |
deleteNestEdges(CyNetwork network) |
static java.util.HashSet<CyEdge> |
edgesLinkingNodes(GraphPerspective edgeNetwork,
java.util.HashSet<CyNode> nodeSet) |
static java.util.List<CyEdge> |
getEdgeList(GraphPerspective network) |
static java.util.HashSet<CyEdge> |
getEdgeSet(GraphPerspective network) |
static java.util.TreeMap<java.lang.String,CyNetwork> |
getNetworksMap() |
static java.util.ArrayList<CyNode> |
getNodeArray(GraphPerspective network) |
static java.util.List<CyNode> |
getNodeList(GraphPerspective network) |
static java.util.HashSet<CyNode> |
getNodeSet(GraphPerspective network) |
static java.util.ArrayList<CyNode> |
getSelectedNodes(CyNetwork network) |
static CyEdge |
reconnect2Nodes(Node src,
Node tgt,
CyEdge fromEdge) |
static void |
reportPosition(CyNetworkView fromView,
CyNetworkView toView) |
static java.util.ArrayList<java.lang.String> |
selectNetworks(java.util.TreeMap<java.lang.String,CyNetwork> networks,
java.lang.String title,
java.lang.String label) |
static java.lang.String |
selectOneNetwork(java.util.TreeMap<java.lang.String,CyNetwork> networks,
java.lang.String title,
java.lang.String label) |
public static java.util.List<CyNode> getNodeList(GraphPerspective network)
public static java.util.List<CyEdge> getEdgeList(GraphPerspective network)
public static java.util.ArrayList<CyNode> getSelectedNodes(CyNetwork network)
public static java.util.HashSet<CyNode> getNodeSet(GraphPerspective network)
public static java.util.HashSet<CyEdge> getEdgeSet(GraphPerspective network)
public static java.util.ArrayList<CyNode> getNodeArray(GraphPerspective network)
public static java.util.HashSet<CyEdge> edgesLinkingNodes(GraphPerspective edgeNetwork, java.util.HashSet<CyNode> nodeSet)
public static CyEdge reconnect2Nodes(Node src, Node tgt, CyEdge fromEdge)
public static CyNetwork createNestNetwork(java.util.ArrayList<java.lang.String> networksToNest, java.util.TreeMap<java.lang.String,CyNetwork> networks)
public static void deleteNestEdges(CyNetwork network)
public static void reportPosition(CyNetworkView fromView, CyNetworkView toView)
public static java.util.TreeMap<java.lang.String,CyNetwork> getNetworksMap()
public static java.lang.String selectOneNetwork(java.util.TreeMap<java.lang.String,CyNetwork> networks, java.lang.String title, java.lang.String label)
public static java.util.ArrayList<java.lang.String> selectNetworks(java.util.TreeMap<java.lang.String,CyNetwork> networks, java.lang.String title, java.lang.String label)