public class TemplateReactionImpl extends com.ibm.adtech.jastor.ThingImpl implements TemplateReaction
TemplateReaction
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level3_DOT_owlFactory to create instances of this class.
(URI: http://www.biopax.org/release/biopax-level3.owl#TemplateReaction)
TYPE
Modifier and Type | Method and Description |
---|---|
void |
addAvailability(java.lang.String availability)
Add a 'availability' property value
|
void |
addComment(java.lang.String comment)
Add a 'comment' property value
|
Provenance |
addDataSource()
Adds an anonymous value for the 'dataSource' property
|
Provenance |
addDataSource(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'dataSource' property
|
void |
addDataSource(Provenance dataSource)
Adds a value for the 'dataSource' property
|
void |
addedStatement(com.hp.hpl.jena.rdf.model.Statement stmt) |
Evidence |
addEvidence()
Adds an anonymous value for the 'evidence' property
|
Evidence |
addEvidence(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'evidence' property
|
void |
addEvidence(Evidence evidence)
Adds a value for the 'evidence' property
|
void |
addName(java.lang.String name)
Add a 'name' property value
|
PhysicalEntity |
addParticipant_asPhysicalEntity()
Adds an anonymous value for the 'participant' property
|
PhysicalEntity |
addParticipant_asPhysicalEntity(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'participant' property.
|
Entity |
addParticipant()
Adds an anonymous value for the 'participant' property
|
Entity |
addParticipant(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'participant' property
|
void |
addParticipant(Entity participant)
Adds a value for the 'participant' property
|
Dna |
addProduct_asDna()
Adds an anonymous value for the 'product' property
|
Dna |
addProduct_asDna(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'product' property.
|
Protein |
addProduct_asProtein()
Adds an anonymous value for the 'product' property
|
Protein |
addProduct_asProtein(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'product' property.
|
Rna |
addProduct_asRna()
Adds an anonymous value for the 'product' property
|
Rna |
addProduct_asRna(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'product' property.
|
void |
addProduct(Dna product)
Adds a value for the 'product' property
|
void |
addProduct(Protein product)
Adds a value for the 'product' property
|
void |
addProduct(Rna product)
Adds a value for the 'product' property
|
Xref |
addXref()
Adds an anonymous value for the 'xref' property
|
Xref |
addXref(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'xref' property
|
void |
addXref(Xref xref)
Adds a value for the 'xref' property
|
void |
clearCache() |
java.util.Iterator |
getAvailability()
Iterates through the 'availability' property values.
|
java.util.Iterator |
getComment()
Iterates through the 'comment' property values.
|
java.util.Iterator |
getDataSource()
Get an Iterator the 'dataSource' property values.
|
java.util.Iterator |
getEvidence()
Get an Iterator the 'evidence' property values.
|
InteractionVocabulary |
getInteractionType()
Gets the 'interactionType' property value
|
java.util.Iterator |
getName()
Iterates through the 'name' property values.
|
java.util.Iterator |
getParticipant_asPhysicalEntity()
Get an Iterator the 'participant' property values.
|
java.util.Iterator |
getParticipant()
Get an Iterator the 'participant' property values.
|
java.util.Iterator |
getProduct_asDna()
Get an Iterator the 'product' property values.
|
java.util.Iterator |
getProduct_asProtein()
Get an Iterator the 'product' property values.
|
java.util.Iterator |
getProduct_asRna()
Get an Iterator the 'product' property values.
|
Dna |
getTemplate_asDna()
Gets the 'template' property value
|
DnaRegion |
getTemplate_asDnaRegion()
Gets the 'template' property value
|
Rna |
getTemplate_asRna()
Gets the 'template' property value
|
RnaRegion |
getTemplate_asRnaRegion()
Gets the 'template' property value
|
java.lang.String |
getTemplateDirection()
Gets the 'templateDirection' property value
|
java.util.Iterator |
getXref()
Get an Iterator the 'xref' property values.
|
java.util.List |
listStatements() |
void |
registerListener(ThingListener listener) |
void |
removeAvailability(java.lang.String availability)
Remove a 'availability' property value.
|
void |
removeComment(java.lang.String comment)
Remove a 'comment' property value.
|
void |
removeDataSource(Provenance dataSource)
Removes a value for the 'dataSource' property.
|
void |
removedStatement(com.hp.hpl.jena.rdf.model.Statement stmt) |
void |
removeEvidence(Evidence evidence)
Removes a value for the 'evidence' property.
|
void |
removeName(java.lang.String name)
Remove a 'name' property value.
|
void |
removeParticipant(Entity participant)
Removes a value for the 'participant' property.
|
void |
removeParticipant(PhysicalEntity participant)
Removes a value for the 'participant' property.
|
void |
removeProduct(Dna product)
Removes a value for the 'product' property.
|
void |
removeProduct(Protein product)
Removes a value for the 'product' property.
|
void |
removeProduct(Rna product)
Removes a value for the 'product' property.
|
void |
removeXref(Xref xref)
Removes a value for the 'xref' property.
|
InteractionVocabulary |
setInteractionType()
Sets the 'interactionType' property value to an anonymous node
|
InteractionVocabulary |
setInteractionType(com.hp.hpl.jena.rdf.model.Resource resource)
Sets the 'interactionType' property value
|
void |
setInteractionType(InteractionVocabulary interactionType)
Sets the 'interactionType' property value
|
Dna |
setTemplate_asDna()
Sets the 'template' property value to an anonymous node
|
Dna |
setTemplate_asDna(com.hp.hpl.jena.rdf.model.Resource resource)
Sets the 'template' property value to the given resource, and add's rdf:type properties.
|
DnaRegion |
setTemplate_asDnaRegion()
Sets the 'template' property value to an anonymous node
|
DnaRegion |
setTemplate_asDnaRegion(com.hp.hpl.jena.rdf.model.Resource resource)
Sets the 'template' property value to the given resource, and add's rdf:type properties.
|
Rna |
setTemplate_asRna()
Sets the 'template' property value to an anonymous node
|
Rna |
setTemplate_asRna(com.hp.hpl.jena.rdf.model.Resource resource)
Sets the 'template' property value to the given resource, and add's rdf:type properties.
|
RnaRegion |
setTemplate_asRnaRegion()
Sets the 'template' property value to an anonymous node
|
RnaRegion |
setTemplate_asRnaRegion(com.hp.hpl.jena.rdf.model.Resource resource)
Sets the 'template' property value to the given resource, and add's rdf:type properties.
|
void |
setTemplate(Dna template)
Sets the 'template' property value
|
void |
setTemplate(DnaRegion template)
Sets the 'template' property value
|
void |
setTemplate(Rna template)
Sets the 'template' property value
|
void |
setTemplate(RnaRegion template)
Sets the 'template' property value
|
void |
setTemplateDirection(java.lang.String templateDirection)
Sets the 'templateDirection' property value
|
void |
unregisterListener(ThingListener listener) |
public java.util.List listStatements()
public void clearCache()
public java.util.Iterator getDataSource() throws JastorException
Entity
getDataSource
in interface Entity
Iterator
of Provenance
JastorException
Entity.dataSourceProperty
public void addDataSource(Provenance dataSource) throws JastorException
Entity
addDataSource
in interface Entity
JastorException
Entity.dataSourceProperty
public Provenance addDataSource() throws JastorException
Entity
addDataSource
in interface Entity
Provenance
createdJastorException
Entity.dataSourceProperty
public Provenance addDataSource(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Entity
addDataSource
in interface Entity
JastorException
Entity.dataSourceProperty
public void removeDataSource(Provenance dataSource) throws JastorException
Entity
removeDataSource
in interface Entity
JastorException
Entity.dataSourceProperty
public java.util.Iterator getAvailability() throws JastorException
Entity
getAvailability
in interface Entity
Iterator
of String
JastorException
Entity.availabilityProperty
public void addAvailability(java.lang.String availability) throws JastorException
Entity
addAvailability
in interface Entity
JastorException
Entity.availabilityProperty
public void removeAvailability(java.lang.String availability) throws JastorException
Entity
removeAvailability
in interface Entity
JastorException
Entity.availabilityProperty
public java.util.Iterator getComment() throws JastorException
Entity
getComment
in interface Entity
Iterator
of String
JastorException
Entity.commentProperty
public void addComment(java.lang.String comment) throws JastorException
Entity
addComment
in interface Entity
JastorException
Entity.commentProperty
public void removeComment(java.lang.String comment) throws JastorException
Entity
removeComment
in interface Entity
JastorException
Entity.commentProperty
public java.util.Iterator getName() throws JastorException
Entity
getName
in interface Entity
Iterator
of String
JastorException
Entity.nameProperty
public void addName(java.lang.String name) throws JastorException
Entity
addName
in interface Entity
JastorException
Entity.nameProperty
public void removeName(java.lang.String name) throws JastorException
Entity
removeName
in interface Entity
JastorException
Entity.nameProperty
public java.util.Iterator getEvidence() throws JastorException
Entity
getEvidence
in interface Entity
Iterator
of Evidence
JastorException
Entity.evidenceProperty
public void addEvidence(Evidence evidence) throws JastorException
Entity
addEvidence
in interface Entity
JastorException
Entity.evidenceProperty
public Evidence addEvidence() throws JastorException
Entity
addEvidence
in interface Entity
Evidence
createdJastorException
Entity.evidenceProperty
public Evidence addEvidence(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Entity
addEvidence
in interface Entity
JastorException
Entity.evidenceProperty
public void removeEvidence(Evidence evidence) throws JastorException
Entity
removeEvidence
in interface Entity
JastorException
Entity.evidenceProperty
public java.util.Iterator getXref() throws JastorException
Entity
getXref
in interface Entity
Iterator
of Xref
JastorException
Entity.xrefProperty
public void addXref(Xref xref) throws JastorException
Entity
addXref
in interface Entity
JastorException
Entity.xrefProperty
public Xref addXref() throws JastorException
Entity
addXref
in interface Entity
Xref
createdJastorException
Entity.xrefProperty
public Xref addXref(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Entity
addXref
in interface Entity
JastorException
Entity.xrefProperty
public void removeXref(Xref xref) throws JastorException
Entity
removeXref
in interface Entity
JastorException
Entity.xrefProperty
public InteractionVocabulary getInteractionType() throws JastorException
Interaction
getInteractionType
in interface Interaction
InteractionVocabulary
JastorException
Interaction.interactionTypeProperty
public void setInteractionType(InteractionVocabulary interactionType) throws JastorException
Interaction
setInteractionType
in interface Interaction
JastorException
Interaction.interactionTypeProperty
public InteractionVocabulary setInteractionType() throws JastorException
Interaction
setInteractionType
in interface Interaction
InteractionVocabulary
, the created valueJastorException
Interaction.interactionTypeProperty
public InteractionVocabulary setInteractionType(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Interaction
setInteractionType
in interface Interaction
JastorException
Interaction.interactionTypeProperty
public java.util.Iterator getParticipant() throws JastorException
Interaction
getParticipant
in interface Interaction
Iterator
of Entity
JastorException
Interaction.participantProperty
public void addParticipant(Entity participant) throws JastorException
Interaction
addParticipant
in interface Interaction
JastorException
Interaction.participantProperty
public Entity addParticipant() throws JastorException
Interaction
addParticipant
in interface Interaction
Entity
createdJastorException
Interaction.participantProperty
public Entity addParticipant(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
TemplateReaction
addParticipant
in interface Interaction
addParticipant
in interface TemplateReaction
JastorException
Interaction.participantProperty
public void removeParticipant(Entity participant) throws JastorException
Interaction
removeParticipant
in interface Interaction
JastorException
Interaction.participantProperty
public java.util.Iterator getParticipant_asPhysicalEntity() throws JastorException
TemplateReaction
getParticipant_asPhysicalEntity
in interface TemplateReaction
Iterator
of PhysicalEntity
JastorException
Interaction.participantProperty
public PhysicalEntity addParticipant_asPhysicalEntity() throws JastorException
TemplateReaction
addParticipant_asPhysicalEntity
in interface TemplateReaction
PhysicalEntity
createdJastorException
Interaction.participantProperty
public PhysicalEntity addParticipant_asPhysicalEntity(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
TemplateReaction
PhysicalEntity
with the factory
and calling addParticipant(fr.curie.BiNoM.pathways.biopax.PhysicalEntity participant)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#PhysicalEntity. That is, this method
should not be used as a shortcut for creating new objects in the model.addParticipant_asPhysicalEntity
in interface TemplateReaction
JastorException
Interaction.participantProperty
public void removeParticipant(PhysicalEntity participant) throws JastorException
TemplateReaction
removeParticipant
in interface TemplateReaction
JastorException
Interaction.participantProperty
public java.lang.String getTemplateDirection() throws JastorException
TemplateReaction
getTemplateDirection
in interface TemplateReaction
String
JastorException
TemplateReaction.templateDirectionProperty
public void setTemplateDirection(java.lang.String templateDirection) throws JastorException
TemplateReaction
setTemplateDirection
in interface TemplateReaction
JastorException
TemplateReaction.templateDirectionProperty
public java.util.Iterator getProduct_asDna() throws JastorException
TemplateReaction
getProduct_asDna
in interface TemplateReaction
Iterator
of Dna
JastorException
TemplateReaction.productProperty
public void addProduct(Dna product) throws JastorException
TemplateReaction
addProduct
in interface TemplateReaction
JastorException
TemplateReaction.productProperty
public Dna addProduct_asDna() throws JastorException
TemplateReaction
addProduct_asDna
in interface TemplateReaction
Dna
createdJastorException
TemplateReaction.productProperty
public Dna addProduct_asDna(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
TemplateReaction
Dna
with the factory
and calling addProduct(fr.curie.BiNoM.pathways.biopax.Dna product)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#Dna. That is, this method
should not be used as a shortcut for creating new objects in the model.addProduct_asDna
in interface TemplateReaction
JastorException
TemplateReaction.productProperty
public void removeProduct(Dna product) throws JastorException
TemplateReaction
removeProduct
in interface TemplateReaction
JastorException
TemplateReaction.productProperty
public java.util.Iterator getProduct_asProtein() throws JastorException
TemplateReaction
getProduct_asProtein
in interface TemplateReaction
Iterator
of Protein
JastorException
TemplateReaction.productProperty
public void addProduct(Protein product) throws JastorException
TemplateReaction
addProduct
in interface TemplateReaction
JastorException
TemplateReaction.productProperty
public Protein addProduct_asProtein() throws JastorException
TemplateReaction
addProduct_asProtein
in interface TemplateReaction
Protein
createdJastorException
TemplateReaction.productProperty
public Protein addProduct_asProtein(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
TemplateReaction
Protein
with the factory
and calling addProduct(fr.curie.BiNoM.pathways.biopax.Protein product)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#Protein. That is, this method
should not be used as a shortcut for creating new objects in the model.addProduct_asProtein
in interface TemplateReaction
JastorException
TemplateReaction.productProperty
public void removeProduct(Protein product) throws JastorException
TemplateReaction
removeProduct
in interface TemplateReaction
JastorException
TemplateReaction.productProperty
public java.util.Iterator getProduct_asRna() throws JastorException
TemplateReaction
getProduct_asRna
in interface TemplateReaction
Iterator
of Rna
JastorException
TemplateReaction.productProperty
public void addProduct(Rna product) throws JastorException
TemplateReaction
addProduct
in interface TemplateReaction
JastorException
TemplateReaction.productProperty
public Rna addProduct_asRna() throws JastorException
TemplateReaction
addProduct_asRna
in interface TemplateReaction
Rna
createdJastorException
TemplateReaction.productProperty
public Rna addProduct_asRna(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
TemplateReaction
Rna
with the factory
and calling addProduct(fr.curie.BiNoM.pathways.biopax.Rna product)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#Rna. That is, this method
should not be used as a shortcut for creating new objects in the model.addProduct_asRna
in interface TemplateReaction
JastorException
TemplateReaction.productProperty
public void removeProduct(Rna product) throws JastorException
TemplateReaction
removeProduct
in interface TemplateReaction
JastorException
TemplateReaction.productProperty
public Dna getTemplate_asDna() throws JastorException
TemplateReaction
getTemplate_asDna
in interface TemplateReaction
Dna
JastorException
TemplateReaction.templateProperty
public void setTemplate(Dna template) throws JastorException
TemplateReaction
setTemplate
in interface TemplateReaction
JastorException
TemplateReaction.templateProperty
public Dna setTemplate_asDna() throws JastorException
TemplateReaction
setTemplate_asDna
in interface TemplateReaction
Dna
, the created valueJastorException
TemplateReaction.templateProperty
public Dna setTemplate_asDna(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
TemplateReaction
Dna
with the factory.
and calling setTemplate(fr.curie.BiNoM.pathways.biopax.Dna template)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#Dna. That is, this method
should not be used as a shortcut for creating new objects in the model.setTemplate_asDna
in interface TemplateReaction
Dna
, the newly created valueJastorException
TemplateReaction.templateProperty
public DnaRegion getTemplate_asDnaRegion() throws JastorException
TemplateReaction
getTemplate_asDnaRegion
in interface TemplateReaction
DnaRegion
JastorException
TemplateReaction.templateProperty
public void setTemplate(DnaRegion template) throws JastorException
TemplateReaction
setTemplate
in interface TemplateReaction
JastorException
TemplateReaction.templateProperty
public DnaRegion setTemplate_asDnaRegion() throws JastorException
TemplateReaction
setTemplate_asDnaRegion
in interface TemplateReaction
DnaRegion
, the created valueJastorException
TemplateReaction.templateProperty
public DnaRegion setTemplate_asDnaRegion(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
TemplateReaction
DnaRegion
with the factory.
and calling setTemplate(fr.curie.BiNoM.pathways.biopax.DnaRegion template)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#DnaRegion. That is, this method
should not be used as a shortcut for creating new objects in the model.setTemplate_asDnaRegion
in interface TemplateReaction
DnaRegion
, the newly created valueJastorException
TemplateReaction.templateProperty
public Rna getTemplate_asRna() throws JastorException
TemplateReaction
getTemplate_asRna
in interface TemplateReaction
Rna
JastorException
TemplateReaction.templateProperty
public void setTemplate(Rna template) throws JastorException
TemplateReaction
setTemplate
in interface TemplateReaction
JastorException
TemplateReaction.templateProperty
public Rna setTemplate_asRna() throws JastorException
TemplateReaction
setTemplate_asRna
in interface TemplateReaction
Rna
, the created valueJastorException
TemplateReaction.templateProperty
public Rna setTemplate_asRna(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
TemplateReaction
Rna
with the factory.
and calling setTemplate(fr.curie.BiNoM.pathways.biopax.Rna template)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#Rna. That is, this method
should not be used as a shortcut for creating new objects in the model.setTemplate_asRna
in interface TemplateReaction
Rna
, the newly created valueJastorException
TemplateReaction.templateProperty
public RnaRegion getTemplate_asRnaRegion() throws JastorException
TemplateReaction
getTemplate_asRnaRegion
in interface TemplateReaction
RnaRegion
JastorException
TemplateReaction.templateProperty
public void setTemplate(RnaRegion template) throws JastorException
TemplateReaction
setTemplate
in interface TemplateReaction
JastorException
TemplateReaction.templateProperty
public RnaRegion setTemplate_asRnaRegion() throws JastorException
TemplateReaction
setTemplate_asRnaRegion
in interface TemplateReaction
RnaRegion
, the created valueJastorException
TemplateReaction.templateProperty
public RnaRegion setTemplate_asRnaRegion(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
TemplateReaction
RnaRegion
with the factory.
and calling setTemplate(fr.curie.BiNoM.pathways.biopax.RnaRegion template)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#RnaRegion. That is, this method
should not be used as a shortcut for creating new objects in the model.setTemplate_asRnaRegion
in interface TemplateReaction
RnaRegion
, the newly created valueJastorException
TemplateReaction.templateProperty
public void registerListener(ThingListener listener)
public void unregisterListener(ThingListener listener)
public void addedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)
public void removedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)