public interface SmallMoleculeReference extends EntityReference
(URI: http://www.biopax.org/release/biopax-level3.owl#SmallMoleculeReference)
Modifier and Type | Field and Description |
---|---|
static com.hp.hpl.jena.rdf.model.Property |
chemicalFormulaProperty
The Jena Property for chemicalFormula
|
static com.hp.hpl.jena.rdf.model.Property |
molecularWeightProperty
The Jena Property for molecularWeight
|
static com.hp.hpl.jena.rdf.model.Property |
structureProperty
The Jena Property for structure
|
static Resource |
TYPE
The rdf:type for this ontology class
|
entityFeatureProperty, entityReferenceTypeProperty, evidenceProperty, memberEntityReferenceProperty, nameProperty, xrefProperty
commentProperty
Modifier and Type | Method and Description |
---|---|
SmallMoleculeReference |
addMemberEntityReference_asSmallMoleculeReference()
Adds an anonymous value for the 'memberEntityReference' property
|
SmallMoleculeReference |
addMemberEntityReference_asSmallMoleculeReference(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'memberEntityReference' property.
|
void |
addMemberEntityReference(SmallMoleculeReference memberEntityReference)
Adds a value for the 'memberEntityReference' property
|
java.lang.String |
getChemicalFormula()
Gets the 'chemicalFormula' property value
|
java.util.Iterator |
getMemberEntityReference_asSmallMoleculeReference()
Get an Iterator the 'memberEntityReference' property values.
|
java.lang.Float |
getMolecularWeight()
Gets the 'molecularWeight' property value
|
ChemicalStructure |
getStructure()
Gets the 'structure' property value
|
void |
removeMemberEntityReference(SmallMoleculeReference memberEntityReference)
Removes a value for the 'memberEntityReference' property.
|
void |
setChemicalFormula(java.lang.String chemicalFormula)
Sets the 'chemicalFormula' property value
|
void |
setMolecularWeight(java.lang.Float molecularWeight)
Sets the 'molecularWeight' property value
|
ChemicalStructure |
setStructure()
Sets the 'structure' property value to an anonymous node
|
void |
setStructure(ChemicalStructure structure)
Sets the 'structure' property value
|
ChemicalStructure |
setStructure(com.hp.hpl.jena.rdf.model.Resource resource)
Sets the 'structure' property value to the given resource, and add's rdf:type properties.
|
addEntityFeature, addEntityFeature, addEntityFeature, addEvidence, addEvidence, addEvidence, addMemberEntityReference, addMemberEntityReference, addName, addXref, addXref, addXref, getEntityFeature, getEntityReferenceType, getEvidence, getMemberEntityReference, getName, getXref, removeEntityFeature, removeEvidence, removeMemberEntityReference, removeName, removeXref, setEntityReferenceType, setEntityReferenceType, setEntityReferenceType
addComment, getComment, removeComment
static final Resource TYPE
static final com.hp.hpl.jena.rdf.model.Property chemicalFormulaProperty
(URI: http://www.biopax.org/release/biopax-level3.owl#chemicalFormula)
static final com.hp.hpl.jena.rdf.model.Property molecularWeightProperty
(URI: http://www.biopax.org/release/biopax-level3.owl#molecularWeight)
static final com.hp.hpl.jena.rdf.model.Property structureProperty
(URI: http://www.biopax.org/release/biopax-level3.owl#structure)
java.util.Iterator getMemberEntityReference_asSmallMoleculeReference() throws com.ibm.adtech.jastor.JastorException
Iterator
of SmallMoleculeReference
com.ibm.adtech.jastor.JastorException
EntityReference.memberEntityReferenceProperty
void addMemberEntityReference(SmallMoleculeReference memberEntityReference) throws com.ibm.adtech.jastor.JastorException
addMemberEntityReference
in interface EntityReference
The
- SmallMoleculeReference
to addcom.ibm.adtech.jastor.JastorException
EntityReference.memberEntityReferenceProperty
SmallMoleculeReference addMemberEntityReference_asSmallMoleculeReference() throws com.ibm.adtech.jastor.JastorException
SmallMoleculeReference
createdcom.ibm.adtech.jastor.JastorException
EntityReference.memberEntityReferenceProperty
SmallMoleculeReference addMemberEntityReference_asSmallMoleculeReference(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
SmallMoleculeReference
with the factory
and calling addMemberEntityReference(fr.curie.BiNoM.pathways.biopax.SmallMoleculeReference memberEntityReference)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#SmallMoleculeReference. That is, this method
should not be used as a shortcut for creating new objects in the model.The
- om.hp.hpl.jena.rdf.model.Resource
to addcom.ibm.adtech.jastor.JastorException
EntityReference.memberEntityReferenceProperty
void removeMemberEntityReference(SmallMoleculeReference memberEntityReference) throws com.ibm.adtech.jastor.JastorException
The
- SmallMoleculeReference
to removecom.ibm.adtech.jastor.JastorException
EntityReference.memberEntityReferenceProperty
java.lang.String getChemicalFormula() throws com.ibm.adtech.jastor.JastorException
String
com.ibm.adtech.jastor.JastorException
chemicalFormulaProperty
void setChemicalFormula(java.lang.String chemicalFormula) throws com.ibm.adtech.jastor.JastorException
{@link
- java.lang.String}com.ibm.adtech.jastor.JastorException
chemicalFormulaProperty
java.lang.Float getMolecularWeight() throws com.ibm.adtech.jastor.JastorException
Float
com.ibm.adtech.jastor.JastorException
molecularWeightProperty
void setMolecularWeight(java.lang.Float molecularWeight) throws com.ibm.adtech.jastor.JastorException
{@link
- java.lang.Float}com.ibm.adtech.jastor.JastorException
molecularWeightProperty
ChemicalStructure getStructure() throws com.ibm.adtech.jastor.JastorException
ChemicalStructure
com.ibm.adtech.jastor.JastorException
structureProperty
void setStructure(ChemicalStructure structure) throws com.ibm.adtech.jastor.JastorException
{@link
- fr.curie.BiNoM.pathways.biopax.ChemicalStructure}com.ibm.adtech.jastor.JastorException
structureProperty
ChemicalStructure setStructure() throws com.ibm.adtech.jastor.JastorException
ChemicalStructure
, the created valuecom.ibm.adtech.jastor.JastorException
structureProperty
ChemicalStructure setStructure(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
ChemicalStructure
with the factory.
and calling setStructure(fr.curie.BiNoM.pathways.biopax.ChemicalStructure structure)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#ChemicalStructure. That is, this method
should not be used as a shortcut for creating new objects in the model.{@link
- com.hp.hpl.jena.rdf.model.Resource} must not be be null.ChemicalStructure
, the newly created valuecom.ibm.adtech.jastor.JastorException
structureProperty