public class BiochemicalPathwayStepImpl extends com.ibm.adtech.jastor.ThingImpl implements BiochemicalPathwayStep
BiochemicalPathwayStep
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level3_DOT_owlFactory to create instances of this class.
(URI: http://www.biopax.org/release/biopax-level3.owl#BiochemicalPathwayStep)
TYPE
Modifier and Type | Method and Description |
---|---|
void |
addComment(java.lang.String comment)
Add a 'comment' property value
|
void |
addedStatement(com.hp.hpl.jena.rdf.model.Statement stmt) |
Evidence |
addEvidence()
Adds an anonymous value for the 'evidence' property
|
Evidence |
addEvidence(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'evidence' property
|
void |
addEvidence(Evidence evidence)
Adds a value for the 'evidence' property
|
PathwayStep |
addNextStep()
Adds an anonymous value for the 'nextStep' property
|
PathwayStep |
addNextStep(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'nextStep' property
|
void |
addNextStep(PathwayStep nextStep)
Adds a value for the 'nextStep' property
|
Control |
addStepProcess_asControl()
Adds an anonymous value for the 'stepProcess' property
|
Control |
addStepProcess_asControl(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'stepProcess' property.
|
Interaction |
addStepProcess_asInteraction()
Adds an anonymous value for the 'stepProcess' property
|
Interaction |
addStepProcess_asInteraction(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'stepProcess' property.
|
Pathway |
addStepProcess_asPathway()
Adds an anonymous value for the 'stepProcess' property
|
Pathway |
addStepProcess_asPathway(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'stepProcess' property.
|
void |
addStepProcess(Control stepProcess)
Adds a value for the 'stepProcess' property
|
void |
addStepProcess(Interaction stepProcess)
Adds a value for the 'stepProcess' property
|
void |
addStepProcess(Pathway stepProcess)
Adds a value for the 'stepProcess' property
|
void |
clearCache() |
java.util.Iterator |
getComment()
Iterates through the 'comment' property values.
|
java.util.Iterator |
getEvidence()
Get an Iterator the 'evidence' property values.
|
java.util.Iterator |
getNextStep()
Get an Iterator the 'nextStep' property values.
|
Conversion |
getStepConversion()
Gets the 'stepConversion' property value
|
java.lang.String |
getStepDirection()
Gets the 'stepDirection' property value
|
java.util.Iterator |
getStepProcess_asControl()
Get an Iterator the 'stepProcess' property values.
|
java.util.Iterator |
getStepProcess_asInteraction()
Get an Iterator the 'stepProcess' property values.
|
java.util.Iterator |
getStepProcess_asPathway()
Get an Iterator the 'stepProcess' property values.
|
java.util.List |
listStatements() |
void |
registerListener(ThingListener listener) |
void |
removeComment(java.lang.String comment)
Remove a 'comment' property value.
|
void |
removedStatement(com.hp.hpl.jena.rdf.model.Statement stmt) |
void |
removeEvidence(Evidence evidence)
Removes a value for the 'evidence' property.
|
void |
removeNextStep(PathwayStep nextStep)
Removes a value for the 'nextStep' property.
|
void |
removeStepProcess(Control stepProcess)
Removes a value for the 'stepProcess' property.
|
void |
removeStepProcess(Interaction stepProcess)
Removes a value for the 'stepProcess' property.
|
void |
removeStepProcess(Pathway stepProcess)
Removes a value for the 'stepProcess' property.
|
Conversion |
setStepConversion()
Sets the 'stepConversion' property value to an anonymous node
|
Conversion |
setStepConversion(com.hp.hpl.jena.rdf.model.Resource resource)
Sets the 'stepConversion' property value
|
void |
setStepConversion(Conversion stepConversion)
Sets the 'stepConversion' property value
|
void |
setStepDirection(java.lang.String stepDirection)
Sets the 'stepDirection' property value
|
void |
unregisterListener(ThingListener listener) |
public java.util.List listStatements()
public void clearCache()
public java.util.Iterator getComment() throws JastorException
UtilityClass
getComment
in interface UtilityClass
Iterator
of String
JastorException
UtilityClass.commentProperty
public void addComment(java.lang.String comment) throws JastorException
UtilityClass
addComment
in interface UtilityClass
JastorException
UtilityClass.commentProperty
public void removeComment(java.lang.String comment) throws JastorException
UtilityClass
removeComment
in interface UtilityClass
JastorException
UtilityClass.commentProperty
public java.util.Iterator getNextStep() throws JastorException
PathwayStep
getNextStep
in interface PathwayStep
Iterator
of PathwayStep
JastorException
PathwayStep.nextStepProperty
public void addNextStep(PathwayStep nextStep) throws JastorException
PathwayStep
addNextStep
in interface PathwayStep
JastorException
PathwayStep.nextStepProperty
public PathwayStep addNextStep() throws JastorException
PathwayStep
addNextStep
in interface PathwayStep
PathwayStep
createdJastorException
PathwayStep.nextStepProperty
public PathwayStep addNextStep(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
PathwayStep
addNextStep
in interface PathwayStep
JastorException
PathwayStep.nextStepProperty
public void removeNextStep(PathwayStep nextStep) throws JastorException
PathwayStep
removeNextStep
in interface PathwayStep
JastorException
PathwayStep.nextStepProperty
public java.util.Iterator getStepProcess_asControl() throws JastorException
BiochemicalPathwayStep
getStepProcess_asControl
in interface BiochemicalPathwayStep
Iterator
of Control
JastorException
PathwayStep.stepProcessProperty
public void addStepProcess(Control stepProcess) throws JastorException
BiochemicalPathwayStep
addStepProcess
in interface BiochemicalPathwayStep
JastorException
PathwayStep.stepProcessProperty
public Control addStepProcess_asControl() throws JastorException
BiochemicalPathwayStep
addStepProcess_asControl
in interface BiochemicalPathwayStep
Control
createdJastorException
PathwayStep.stepProcessProperty
public Control addStepProcess_asControl(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
BiochemicalPathwayStep
Control
with the factory
and calling addStepProcess(fr.curie.BiNoM.pathways.biopax.Control stepProcess)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#Control. That is, this method
should not be used as a shortcut for creating new objects in the model.addStepProcess_asControl
in interface BiochemicalPathwayStep
JastorException
PathwayStep.stepProcessProperty
public void removeStepProcess(Control stepProcess) throws JastorException
BiochemicalPathwayStep
removeStepProcess
in interface BiochemicalPathwayStep
JastorException
PathwayStep.stepProcessProperty
public java.util.Iterator getStepProcess_asInteraction() throws JastorException
PathwayStep
getStepProcess_asInteraction
in interface PathwayStep
Iterator
of Interaction
JastorException
PathwayStep.stepProcessProperty
public void addStepProcess(Interaction stepProcess) throws JastorException
PathwayStep
addStepProcess
in interface PathwayStep
JastorException
PathwayStep.stepProcessProperty
public Interaction addStepProcess_asInteraction() throws JastorException
PathwayStep
addStepProcess_asInteraction
in interface PathwayStep
Interaction
createdJastorException
PathwayStep.stepProcessProperty
public Interaction addStepProcess_asInteraction(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
PathwayStep
Interaction
with the factory
and calling addStepProcess(fr.curie.BiNoM.pathways.biopax.Interaction stepProcess)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#Interaction. That is, this method
should not be used as a shortcut for creating new objects in the model.addStepProcess_asInteraction
in interface PathwayStep
JastorException
PathwayStep.stepProcessProperty
public void removeStepProcess(Interaction stepProcess) throws JastorException
PathwayStep
removeStepProcess
in interface PathwayStep
JastorException
PathwayStep.stepProcessProperty
public java.util.Iterator getStepProcess_asPathway() throws JastorException
PathwayStep
getStepProcess_asPathway
in interface PathwayStep
Iterator
of Pathway
JastorException
PathwayStep.stepProcessProperty
public void addStepProcess(Pathway stepProcess) throws JastorException
PathwayStep
addStepProcess
in interface PathwayStep
JastorException
PathwayStep.stepProcessProperty
public Pathway addStepProcess_asPathway() throws JastorException
PathwayStep
addStepProcess_asPathway
in interface PathwayStep
Pathway
createdJastorException
PathwayStep.stepProcessProperty
public Pathway addStepProcess_asPathway(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
PathwayStep
Pathway
with the factory
and calling addStepProcess(fr.curie.BiNoM.pathways.biopax.Pathway stepProcess)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#Pathway. That is, this method
should not be used as a shortcut for creating new objects in the model.addStepProcess_asPathway
in interface PathwayStep
JastorException
PathwayStep.stepProcessProperty
public void removeStepProcess(Pathway stepProcess) throws JastorException
PathwayStep
removeStepProcess
in interface PathwayStep
JastorException
PathwayStep.stepProcessProperty
public java.util.Iterator getEvidence() throws JastorException
PathwayStep
getEvidence
in interface PathwayStep
Iterator
of Evidence
JastorException
PathwayStep.evidenceProperty
public void addEvidence(Evidence evidence) throws JastorException
PathwayStep
addEvidence
in interface PathwayStep
JastorException
PathwayStep.evidenceProperty
public Evidence addEvidence() throws JastorException
PathwayStep
addEvidence
in interface PathwayStep
Evidence
createdJastorException
PathwayStep.evidenceProperty
public Evidence addEvidence(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
PathwayStep
addEvidence
in interface PathwayStep
JastorException
PathwayStep.evidenceProperty
public void removeEvidence(Evidence evidence) throws JastorException
PathwayStep
removeEvidence
in interface PathwayStep
JastorException
PathwayStep.evidenceProperty
public Conversion getStepConversion() throws JastorException
BiochemicalPathwayStep
getStepConversion
in interface BiochemicalPathwayStep
Conversion
JastorException
BiochemicalPathwayStep.stepConversionProperty
public void setStepConversion(Conversion stepConversion) throws JastorException
BiochemicalPathwayStep
setStepConversion
in interface BiochemicalPathwayStep
JastorException
BiochemicalPathwayStep.stepConversionProperty
public Conversion setStepConversion() throws JastorException
BiochemicalPathwayStep
setStepConversion
in interface BiochemicalPathwayStep
Conversion
, the created valueJastorException
BiochemicalPathwayStep.stepConversionProperty
public Conversion setStepConversion(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
BiochemicalPathwayStep
setStepConversion
in interface BiochemicalPathwayStep
JastorException
BiochemicalPathwayStep.stepConversionProperty
public java.lang.String getStepDirection() throws JastorException
BiochemicalPathwayStep
getStepDirection
in interface BiochemicalPathwayStep
String
JastorException
BiochemicalPathwayStep.stepDirectionProperty
public void setStepDirection(java.lang.String stepDirection) throws JastorException
BiochemicalPathwayStep
setStepDirection
in interface BiochemicalPathwayStep
JastorException
BiochemicalPathwayStep.stepDirectionProperty
public void registerListener(ThingListener listener)
public void unregisterListener(ThingListener listener)
public void addedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)
public void removedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)