Class | Description |
---|---|
AboutBox |
About BiNoM box.
|
ComboBoxes |
A dialog box to select values of different list of strings
Fields displays in comboboxes values to be selected
Field index corresponds to datas index
datas contains lists of values
The result got by launch is at index 0 the selected field and
at index 1 to n (label size - 1) the values selected in comboboxes
selected is the field selected when launching dialog
|
ComputingByBFS |
Put the graph from Cytoscape network in practical data structure:
arrays of nodes, edges, sources, targets and adjacency
Use breadth first search to iterate class for computing
list of edges between nodes
Influence by a simple recurrent model
the shortest path matrix used in clustering
Reverse breadth first search is used by extract edges between nodes
Influence Area by the same model but without weights
|
CopySelectedNodesAndEdges | |
CreateSetIntersectionGraph | |
GridBagDialog |
Parent of dialog classes using parameters of GridBagDialog
|
ListAllNodes | |
ListAllNodesDialog | |
ListAllReactions | |
ListAllReactionsDialog | |
ListDialog |
A dialog box to select strings in a sorted list displaying selected strings
|
MergeNetworksAndFilter | |
MergeNetworksAndFilterTask | |
MergeNetworksAndFilterTaskFactory | |
NodesAndEdgesClipboard | |
PasteNodesAndEdges | |
PasteNodesAndEdgesDialog | |
PavingData |
Data structure for Paving Dialog used too for displaying arrays
xNames: column names
yNames: row names
stateNames: state names for discrete visualization
stateAbbrev: short names of states to displaying in text window
stateArray: array of states for discrete visualization
stateColors: colors used for displaying states
values: continue states values for continue visualization from blue to red (negative to positive)
|
PavingDialog |
Create a paved window where colors depend on
- a state defined by an array of integer,stateNotValue=true
- a value from an array of values, 2 options:
1 negative in green, positive in red and zero in black, with a progressive gradation
2 negative in blue, positive in red and zero in white, with a progressive gradation
Selection of squares writes in text window data of selected squares
there is a geometric cooking to adjust square, the result is not always perfect
|
SelectDownstreamNeighbours | |
SelectEdgesBetweenSelectedNodes | |
SelectNodesByAttributeSubstring | |
SelectNodesByAttributeSubstringDialog | |
SelectUpstreamNeighbours | |
ShowClipboardContents | |
ShowClipboardContentsDialog | |
ShowTextDialog | |
TextBox |
Not modal dialog displaying text and allowing to copy it in clipboard
|
TextBoxDialog |
Modal dialog displaying text, allowing to copy it in clipboard, displaying a message and proposing a choice
|
TwoListDialog |