public class ACSNProcedures
extends java.lang.Object
Constructor and Description |
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ACSNProcedures() |
Modifier and Type | Method and Description |
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static void |
assignFontSizeToAllSpecies(SbmlDocument sbml,
float fontSize) |
static void |
changeModelName(java.lang.String xmlFileName,
java.lang.String name) |
static void |
changeModelNotes(java.lang.String modelnotes,
java.lang.String xmlFileName) |
static void |
copyModelNotesToFile(java.io.File folder,
java.lang.String folderOut) |
static void |
copyModelNotesToFile(java.io.File folder,
java.lang.String fileIn,
java.lang.String fileOut) |
static void |
copyModelNotesToFile(java.lang.String xmlFileName,
java.lang.String folderOut) |
static void |
copyModelNotesToFile(java.lang.String xmlFileName,
java.lang.String fileIn,
java.lang.String fileOut) |
static void |
doMakeHiddenLevel2(java.lang.String xmlFileName,
java.lang.String xmlOutFileName,
int fontsize) |
static void |
doMergePngs(java.lang.String pngFileName1,
float transparency1,
java.lang.String pngFileName2,
float transparency2,
java.lang.String pngFileName3,
float transparency3,
java.lang.String pngOutFileName) |
static void |
doRemoveReactions(java.lang.String xmlFileName,
java.lang.String xmlOutFileName) |
static void |
doScalePng(java.lang.String pngFileName1,
java.lang.String pngOutFileName) |
static void |
main(java.lang.String[] args) |
static void |
RemoveNames(SbmlDocument sbml) |
static void |
RemoveResidueNames(SbmlDocument sbml) |
static void |
updateAnnotations(java.lang.String sourceFileName,
java.lang.String targetFileName) |
static void |
updateLinks(java.lang.String mergeConfigFile,
java.lang.String connectionDBTable) |
public static void main(java.lang.String[] args)
args
- public static void doRemoveReactions(java.lang.String xmlFileName, java.lang.String xmlOutFileName)
public static void doMergePngs(java.lang.String pngFileName1, float transparency1, java.lang.String pngFileName2, float transparency2, java.lang.String pngFileName3, float transparency3, java.lang.String pngOutFileName) throws java.lang.Exception
java.lang.Exception
public static void doMakeHiddenLevel2(java.lang.String xmlFileName, java.lang.String xmlOutFileName, int fontsize)
public static void doScalePng(java.lang.String pngFileName1, java.lang.String pngOutFileName) throws java.lang.Exception
java.lang.Exception
public static void RemoveNames(SbmlDocument sbml)
public static void RemoveResidueNames(SbmlDocument sbml)
public static void assignFontSizeToAllSpecies(SbmlDocument sbml, float fontSize)
public static void updateLinks(java.lang.String mergeConfigFile, java.lang.String connectionDBTable) throws java.lang.Exception
java.lang.Exception
public static void changeModelNotes(java.lang.String modelnotes, java.lang.String xmlFileName)
public static void changeModelName(java.lang.String xmlFileName, java.lang.String name)
public static void updateAnnotations(java.lang.String sourceFileName, java.lang.String targetFileName)
public static void copyModelNotesToFile(java.io.File folder, java.lang.String fileIn, java.lang.String fileOut)
public static void copyModelNotesToFile(java.io.File folder, java.lang.String folderOut)
public static void copyModelNotesToFile(java.lang.String xmlFileName, java.lang.String fileIn, java.lang.String fileOut)
public static void copyModelNotesToFile(java.lang.String xmlFileName, java.lang.String folderOut)