public class BioPAXImportBaseTask
extends java.lang.Object
Modifier and Type | Field and Description |
---|---|
protected boolean |
applyLayout |
protected int[] |
bioPAXAlgos |
protected java.lang.String |
bioPAXName |
protected BioPAXToCytoscapeConverter.Option |
bioPAXOption |
protected java.io.File |
file |
protected java.net.URL |
url |
Modifier | Constructor and Description |
---|---|
protected |
BioPAXImportBaseTask(java.io.File file,
java.net.URL url,
java.lang.String name,
int[] algos,
BioPAXToCytoscapeConverter.Option option,
boolean applyLayout) |
Modifier and Type | Method and Description |
---|---|
protected BioPAXToCytoscapeConverter.Graph |
makeGraph(int which) |
java.lang.String |
makeName(int algo,
java.lang.String name) |
protected java.lang.String bioPAXName
protected BioPAXToCytoscapeConverter.Option bioPAXOption
protected int[] bioPAXAlgos
protected java.io.File file
protected java.net.URL url
protected boolean applyLayout
protected BioPAXImportBaseTask(java.io.File file, java.net.URL url, java.lang.String name, int[] algos, BioPAXToCytoscapeConverter.Option option, boolean applyLayout)
protected BioPAXToCytoscapeConverter.Graph makeGraph(int which) throws java.lang.Exception
java.lang.Exception
public java.lang.String makeName(int algo, java.lang.String name)