Class | Description |
---|---|
AccessionNumberTable |
Class for conversion from some accession numbers and names to the id- and namespace used by a database
|
analyseInstallSpyLog | |
BioPAXGraphMapper |
Creates a BioPAX index - mapping of BioPAX content onto an attributed (di)graph
|
BioPAXGraphMappingService |
Service class performing creating BioPAX index
|
BioPAXGraphQuery |
A simple container of the BioPAX standard query
|
BioPAXGraphQueryEngine |
The actual implementation of the standard query
|
BioPAXMerge |
Utilities for merging BioPAX objects
|
BioPAXNamingService |
BioPAX Naming Service.
|
BioPAXUtilities |
Set of utilities for manipulating com.hp.hpl.jena.rdf.model.Model objects
|
CellDesignerGenerator | |
CheckCellDesignerFile | |
CombinationGenerator |
The CombinationGenerator Java class systematically generates all combinations of n elements, taken r at a time.
|
ComputeNaviCellMaps | |
ExtractGMTFromCellDesigner | |
GeneticInteractionNetworks | |
GMTFile | |
GraphUtils | |
GraphXGMMLParser |
Simple XGMML parser
|
InsertCellDesignerParameters | |
insertMassActionLaws | |
KEGGAccess | |
LaplaceMatToSif | |
MergingMapsProcessor |
Cell Designer merging maps procedures.
|
ModifyCellDesignerNotes | |
OFTENAnalysis | |
OptionParser | |
Pair | |
PowerfulTokenizer |
A Powerful Tokenizer
Author Bhabani Padhi
Extension of the standard StringTokenizer
|
prepareCellDesignerFile | |
SetOverlapAnalysis | |
SignsOfPaths | |
SimpleTable |
Simple implementation of a table of entries
|
SpeciesStructure | |
SubnetworkProperties | |
testCellDesignerFile | |
Utils |
Set of simple functions
|
Utils.Transparency | |
XGMMLExport |
deprecated
|