Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
ADD |
4 |
public static final int |
REMOVE |
2 |
public static final int |
REMOVE_ADD |
6 |
public static final int |
UPDATE |
1 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
ATTR_SEP |
"@@@" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
EDGE_ACTIVATION |
"ACTIVATION" |
public static final java.lang.String |
EDGE_ATTR |
"BIOPAX_EDGE_TYPE" |
public static final java.lang.String |
EDGE_CATALYSIS_ACTIVATION |
"CATALYSIS_ACTIVATION" |
public static final java.lang.String |
EDGE_CATALYSIS_INHIBITION |
"CATALYSIS_INHIBITION" |
public static final java.lang.String |
EDGE_CATALYSIS_UNKNOWN |
"CATALYSIS_UNKNOWN" |
public static final java.lang.String |
EDGE_CONTAINS |
"CONTAINS" |
public static final java.lang.String |
EDGE_CONTROL_ACTIVATION |
"CONTROL_ACTIVATION" |
public static final java.lang.String |
EDGE_CONTROL_INHIBITION |
"CONTROL_INHIBITION" |
public static final java.lang.String |
EDGE_CONTROL_UNKNOWN |
"CONTROL_UNKNOWN" |
public static final java.lang.String |
EDGE_geneticInteraction |
"GeneticInteraction" |
public static final java.lang.String |
EDGE_INHIBITION |
"INHIBITION" |
public static final java.lang.String |
EDGE_INTERSECTION |
"INTERSECTION" |
public static final java.lang.String |
EDGE_LEFT |
"LEFT" |
public static final java.lang.String |
EDGE_MODULATION_ACTIVATION |
"MODULATION_ACTIVATION" |
public static final java.lang.String |
EDGE_MODULATION_INHIBITION |
"MODULATION_INHIBITION" |
public static final java.lang.String |
EDGE_MODULATION_UNKNOWN |
"MODULATION_UNKNOWN" |
public static final java.lang.String |
EDGE_NEXT |
"NEXT" |
public static final java.lang.String |
EDGE_physicalInteraction |
"PhysicalInteraction" |
public static final java.lang.String |
EDGE_REFERENCE |
"REFERENCE" |
public static final java.lang.String |
EDGE_RIGHT |
"RIGHT" |
public static final java.lang.String |
EDGE_SPECIESOF |
"SPECIESOF" |
public static final java.lang.String |
EDGE_STEP |
"STEP" |
public static final java.lang.String |
EDGE_TEMPLATEREACTIONREGULATION_ACTIVATION |
"TEMPLATEREACTIONREGULATION_ACTIVATION" |
public static final java.lang.String |
EDGE_TEMPLATEREACTIONREGULATION_INHIBITION |
"TEMPLATEREACTIONREGULATION_INHIBITION" |
public static final java.lang.String |
EDGE_TEMPLATEREACTIONREGULATION_UNKNOWN |
"TEMPLATEREACTIONREGULATION_UNKNOWN" |
public static final java.lang.String |
NODE_ATTR |
"BIOPAX_NODE_TYPE" |
public static final java.lang.String |
NODE_BIOCHEMICAL_REACTION |
"BiochemicalReaction" |
public static final java.lang.String |
NODE_CATALYSIS |
"Catalysis" |
public static final java.lang.String |
NODE_COMPLEX |
"Complex" |
public static final java.lang.String |
NODE_COMPLEX_ASSEMBLY |
"ComplexAssembly" |
public static final java.lang.String |
NODE_CONTROL |
"Control" |
public static final java.lang.String |
NODE_CONVERSION |
"Conversion" |
public static final java.lang.String |
NODE_DNA |
"Dna" |
public static final java.lang.String |
NODE_DNAREGION |
"DnaRegion" |
public static final java.lang.String |
NODE_GENE |
"Gene" |
public static final java.lang.String |
NODE_GENETIC_INTERACTION |
"GeneticInteraction" |
public static final java.lang.String |
NODE_INTERACTION |
"Interaction" |
public static final java.lang.String |
NODE_MODULATION |
"Modulation" |
public static final java.lang.String |
NODE_PATHWAY |
"Pathway" |
public static final java.lang.String |
NODE_PATHWAY_STEP |
"PathwayStep" |
public static final java.lang.String |
NODE_PHYSICAL_ENTITY |
"PhysicalEntity" |
public static final java.lang.String |
NODE_PHYSICAL_INTERACTION |
"PhysicalInteraction" |
public static final java.lang.String |
NODE_PROTEIN |
"Protein" |
public static final java.lang.String |
NODE_PUBLICATION |
"Publication" |
public static final java.lang.String |
NODE_RNA |
"Rna" |
public static final java.lang.String |
NODE_RNAREGION |
"RnaRegion" |
public static final java.lang.String |
NODE_SMALL_MOLECULE |
"SmallMolecule" |
public static final java.lang.String |
NODE_TEMPLATE_REACTION |
"TemplateReaction" |
public static final java.lang.String |
NODE_TRANSPORT |
"Transport" |
public static final java.lang.String |
NODE_TRANSPORT_WITH_BIOCHEMICAL_REACTION |
"TransportWithBiochemicalReaction" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
EDGE_ATTR |
"CELLDESIGNER_EDGE_TYPE" |
public static final java.lang.String |
EDGE_CATALYSIS |
"CATALYSIS" |
public static final java.lang.String |
EDGE_CATALYSIS_UNKNOWN |
"UNKNOWN_CATALYSIS" |
public static final java.lang.String |
EDGE_INHIBITION |
"INHIBITION" |
public static final java.lang.String |
EDGE_INTERSECTION |
"INTERSECTION" |
public static final java.lang.String |
EDGE_LEFT |
"LEFT" |
public static final java.lang.String |
EDGE_MODIFIES |
"MODIFIES" |
public static final java.lang.String |
EDGE_MODULATION |
"MODULATION" |
public static final java.lang.String |
EDGE_NEGATIVE_INFLUENCE |
"NEGATIVE_INFLUENCE" |
public static final java.lang.String |
EDGE_PHYSICAL_STIMULATION |
"PHYSICAL_STIMULATION" |
public static final java.lang.String |
EDGE_POSITIVE_INFLUENCE |
"POSITIVE_INFLUENCE" |
public static final java.lang.String |
EDGE_RIGHT |
"RIGHT" |
public static final java.lang.String |
EDGE_TRANSCRIPTIONAL_ACTIVATION |
"TRANSCRIPTIONAL_ACTIVATION" |
public static final java.lang.String |
EDGE_TRANSCRIPTIONAL_INHIBITION |
"TRANSCRIPTIONAL_INHIBITION" |
public static final java.lang.String |
EDGE_TRIGGER |
"TRIGGER" |
public static final java.lang.String |
EDGE_UNKNOWN_INHIBITION |
"UNKNOWN_INHIBITION" |
public static final java.lang.String |
EDGE_UNKNOWN_NEGATIVE_INFLUENCE |
"UNKNOWN_NEGATIVE_INFLUENCE" |
public static final java.lang.String |
EDGE_UNKNOWN_POSITIVE_INFLUENCE |
"UNKNOWN_POSITIVE_INFLUENCE" |
public static final java.lang.String |
EDGE_UNKNOWN_TRANSITION |
"UNKNOWN_TRANSITION" |
public static final java.lang.String |
NODE_ATTR |
"CELLDESIGNER_NODE_TYPE" |
public static final java.lang.String |
NODE_CATALYSIS |
"CATALYSIS" |
public static final java.lang.String |
NODE_COMPLEX |
"COMPLEX" |
public static final java.lang.String |
NODE_GENE |
"GENE" |
public static final java.lang.String |
NODE_HETERODIMER_ASSOCIATION |
"HETERODIMER_ASSOCIATION" |
public static final java.lang.String |
NODE_HETERODIMER_DISSOCIATION |
"DISSOCIATION" |
public static final java.lang.String |
NODE_INHIBITION |
"INHIBITION" |
public static final java.lang.String |
NODE_ION |
"ION" |
public static final java.lang.String |
NODE_KNOWN_TRANSITION_OMITTED |
"KNOWN_TRANSITION_OMITTED" |
public static final java.lang.String |
NODE_NEGATIVE_INFLUENCE |
"NEGATIVE_INFLUENCE" |
public static final java.lang.String |
NODE_PATHWAY |
"PATHWAY" |
public static final java.lang.String |
NODE_PHENOTYPE |
"PHENOTYPE" |
public static final java.lang.String |
NODE_POSITIVE_INFLUENCE |
"POSITIVE_INFLUENCE" |
public static final java.lang.String |
NODE_PROTEIN |
"PROTEIN" |
public static final java.lang.String |
NODE_RNA |
"RNA" |
public static final java.lang.String |
NODE_SIMPLE_MOLECULE |
"SIMPLE_MOLECULE" |
public static final java.lang.String |
NODE_STATE_TRANSITION |
"STATE_TRANSITION" |
public static final java.lang.String |
NODE_TRANSCRIPTION |
"TRANSCRIPTION" |
public static final java.lang.String |
NODE_TRANSCRIPTIONAL_ACTIVATION |
"TRANSCRIPTIONAL_ACTIVATION" |
public static final java.lang.String |
NODE_TRANSCRIPTIONAL_INHIBITION |
"TRANSCRIPTIONAL_INHIBITION" |
public static final java.lang.String |
NODE_TRANSLATION |
"TRANSLATION" |
public static final java.lang.String |
NODE_TRANSLATIONAL_ACTIVATION |
"TRANSLATIONAL_ACTIVATION" |
public static final java.lang.String |
NODE_TRANSLATIONAL_INHIBITION |
"TRANSLATIONAL_INHIBITION" |
public static final java.lang.String |
NODE_TRANSPORT |
"TRANSPORT" |
public static final java.lang.String |
NODE_TRUNCATION |
"TRUNCATION" |
public static final java.lang.String |
NODE_UNKNOWN_NEGATIVE_INFLUENCE |
"UNKNOWN_NEGATIVE_INFLUENCE" |
public static final java.lang.String |
NODE_UNKNOWN_POSITIVE_INFLUENCE |
"UNKNOWN_POSITIVE_INFLUENCE" |
public static final java.lang.String |
NODE_UNKNOWN_REACTION |
"UNKNOWN_REACTION" |
public static final java.lang.String |
NODE_UNKNOWN_TRANSITION |
"UNKNOWN_TRANSITION" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
errorWeigth |
"Influence weigth attribute not rigthly updated\r\nCannot display influence" |
public static final java.lang.String |
title |
"Select Sub-network from Sources to Targets" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
title |
"Display Influence Reach Area in Array" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
title |
"Influence Reach Area as Attribute" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
title |
"Display Influence Array as Paved Window" |
public static final java.lang.String |
titleF |
"Green Black Red" |
public static final java.lang.String |
titleT |
"Blue White Red" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
title |
"Display Influence Array As Text" |
public static final java.lang.String |
titleC |
"For Computing" |
public static final java.lang.String |
titleV |
"For Visualizing" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
title |
"Influence by Active Nodes as Attribute" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
title |
"Display Network and Parameter Features" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
title |
"Input Reach Parameter" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
title |
"Update Weigth Influence Attribute" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
ATTR_SEP |
"@@@" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
title |
"Agglomerate the Nearest Nodes in Modules" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
title |
"Create Connections between Modules" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
title |
"Create Network of Modules" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
title |
"Destroy Networks Unused as Module" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
title |
"Find Common Nodes in Modules" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
title |
"Create Network from Intersection of 2 Selected Modules" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
title |
"List Components of Species in Network and Modules" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
title |
"List Nodes of Modules and Network" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
title |
"Create Network from Union of Selected Modules" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
NAME |
"Module Style" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
title |
"Assign Module Names to Node Attribute" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
title |
"Create Modules from Networks" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
title |
"Recreate Lost Connections inside Modules" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
B |
1 |
public static final int |
H |
2 |
public static final int |
N |
0 |
public static final int |
V |
3 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
FULL_INDEX_CONVERSION |
0 |
public static final int |
INTERACTION_CONVERSION |
3 |
public static final int |
PATHWAY_STRUCTURE_CONVERSION |
2 |
public static final int |
REACTION_NETWORK_CONVERSION |
1 |