public class RemoveNonExpressedProteins
extends java.lang.Object
Constructor and Description |
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RemoveNonExpressedProteins() |
Modifier and Type | Method and Description |
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void |
assignColorToProteins(SbmlDocument sbml,
java.lang.String id,
java.awt.Color cl) |
static void |
colorProteins(java.lang.String CDFileName,
java.lang.String featureTableName) |
static void |
createAttributeTable(fr.curie.BiNoM.pathways.test.RemoveNonExpressedProteins.SimpleTable tabl,
SbmlDocument sbmlp,
java.lang.String path) |
static java.util.Vector<java.util.Vector<java.lang.String>> |
extractAttributesFromNotes(java.lang.String text) |
java.awt.Color[] |
getColorCode(fr.curie.BiNoM.pathways.test.RemoveNonExpressedProteins.SimpleTable tab,
int colNum,
boolean maxInterval,
boolean logScale) |
static java.awt.Color |
getSpektrumGR(float x) |
static java.awt.Color |
getSpektrumGRB(float x) |
fr.curie.BiNoM.pathways.test.RemoveNonExpressedProteins.SimpleTable |
loadAttribTable(java.lang.String fn) |
static void |
main(java.lang.String[] args) |
static void |
putSpeciesNotesIntoProteinNotes(SbmlDocument sbmlp) |
static java.lang.String |
replaceString(java.lang.String source,
java.lang.String shabl,
java.lang.String val) |
public static void main(java.lang.String[] args)
public static void colorProteins(java.lang.String CDFileName, java.lang.String featureTableName)
public void assignColorToProteins(SbmlDocument sbml, java.lang.String id, java.awt.Color cl)
public fr.curie.BiNoM.pathways.test.RemoveNonExpressedProteins.SimpleTable loadAttribTable(java.lang.String fn)
public java.awt.Color[] getColorCode(fr.curie.BiNoM.pathways.test.RemoveNonExpressedProteins.SimpleTable tab, int colNum, boolean maxInterval, boolean logScale)
public static java.awt.Color getSpektrumGR(float x)
public static java.awt.Color getSpektrumGRB(float x)
public static java.lang.String replaceString(java.lang.String source, java.lang.String shabl, java.lang.String val)
public static void createAttributeTable(fr.curie.BiNoM.pathways.test.RemoveNonExpressedProteins.SimpleTable tabl, SbmlDocument sbmlp, java.lang.String path)
public static java.util.Vector<java.util.Vector<java.lang.String>> extractAttributesFromNotes(java.lang.String text)
public static void putSpeciesNotesIntoProteinNotes(SbmlDocument sbmlp)