public interface GeneticInteraction extends Interaction
(URI: http://www.biopax.org/release/biopax-level3.owl#GeneticInteraction)
Modifier and Type | Field and Description |
---|---|
static com.hp.hpl.jena.rdf.model.Property |
interactionScoreProperty
The Jena Property for interactionScore
|
static com.hp.hpl.jena.rdf.model.Property |
phenotypeProperty
The Jena Property for phenotype
|
static Resource |
TYPE
The rdf:type for this ontology class
|
interactionTypeProperty, participantProperty
availabilityProperty, commentProperty, dataSourceProperty, evidenceProperty, nameProperty, xrefProperty
Modifier and Type | Method and Description |
---|---|
Score |
addInteractionScore()
Adds an anonymous value for the 'interactionScore' property
|
Score |
addInteractionScore(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'interactionScore' property.
|
void |
addInteractionScore(Score interactionScore)
Adds a value for the 'interactionScore' property
|
Gene |
addParticipant_asGene()
Adds an anonymous value for the 'participant' property
|
Gene |
addParticipant_asGene(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'participant' property.
|
void |
addParticipant(Gene participant)
Adds a value for the 'participant' property
|
java.util.Iterator |
getInteractionScore()
Get an Iterator the 'interactionScore' property values.
|
java.util.Iterator |
getParticipant_asGene()
Get an Iterator the 'participant' property values.
|
PhenotypeVocabulary |
getPhenotype()
Gets the 'phenotype' property value
|
void |
removeInteractionScore(Score interactionScore)
Removes a value for the 'interactionScore' property.
|
void |
removeParticipant(Gene participant)
Removes a value for the 'participant' property.
|
PhenotypeVocabulary |
setPhenotype()
Sets the 'phenotype' property value to an anonymous node
|
PhenotypeVocabulary |
setPhenotype(com.hp.hpl.jena.rdf.model.Resource resource)
Sets the 'phenotype' property value to the given resource, and add's rdf:type properties.
|
void |
setPhenotype(PhenotypeVocabulary phenotype)
Sets the 'phenotype' property value
|
addParticipant, addParticipant, getInteractionType, getParticipant, removeParticipant, setInteractionType, setInteractionType, setInteractionType
addAvailability, addComment, addDataSource, addDataSource, addDataSource, addEvidence, addEvidence, addEvidence, addName, addXref, addXref, addXref, getAvailability, getComment, getDataSource, getEvidence, getName, getXref, removeAvailability, removeComment, removeDataSource, removeEvidence, removeName, removeXref
static final Resource TYPE
static final com.hp.hpl.jena.rdf.model.Property interactionScoreProperty
(URI: http://www.biopax.org/release/biopax-level3.owl#interactionScore)
static final com.hp.hpl.jena.rdf.model.Property phenotypeProperty
(URI: http://www.biopax.org/release/biopax-level3.owl#phenotype)
java.util.Iterator getParticipant_asGene() throws com.ibm.adtech.jastor.JastorException
Iterator
of Gene
com.ibm.adtech.jastor.JastorException
Interaction.participantProperty
void addParticipant(Gene participant) throws com.ibm.adtech.jastor.JastorException
addParticipant
in interface Interaction
The
- Gene
to addcom.ibm.adtech.jastor.JastorException
Interaction.participantProperty
Gene addParticipant_asGene() throws com.ibm.adtech.jastor.JastorException
Gene
createdcom.ibm.adtech.jastor.JastorException
Interaction.participantProperty
Gene addParticipant_asGene(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
Gene
with the factory
and calling addParticipant(fr.curie.BiNoM.pathways.biopax.Gene participant)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#Gene. That is, this method
should not be used as a shortcut for creating new objects in the model.The
- om.hp.hpl.jena.rdf.model.Resource
to addcom.ibm.adtech.jastor.JastorException
Interaction.participantProperty
void removeParticipant(Gene participant) throws com.ibm.adtech.jastor.JastorException
The
- Gene
to removecom.ibm.adtech.jastor.JastorException
Interaction.participantProperty
java.util.Iterator getInteractionScore() throws com.ibm.adtech.jastor.JastorException
Iterator
of Score
com.ibm.adtech.jastor.JastorException
interactionScoreProperty
void addInteractionScore(Score interactionScore) throws com.ibm.adtech.jastor.JastorException
The
- Score
to addcom.ibm.adtech.jastor.JastorException
interactionScoreProperty
Score addInteractionScore() throws com.ibm.adtech.jastor.JastorException
Score
createdcom.ibm.adtech.jastor.JastorException
interactionScoreProperty
Score addInteractionScore(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
Score
with the factory
and calling addInteractionScore(fr.curie.BiNoM.pathways.biopax.Score interactionScore)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#Score. That is, this method
should not be used as a shortcut for creating new objects in the model.The
- om.hp.hpl.jena.rdf.model.Resource
to addcom.ibm.adtech.jastor.JastorException
interactionScoreProperty
void removeInteractionScore(Score interactionScore) throws com.ibm.adtech.jastor.JastorException
The
- Score
to removecom.ibm.adtech.jastor.JastorException
interactionScoreProperty
PhenotypeVocabulary getPhenotype() throws com.ibm.adtech.jastor.JastorException
PhenotypeVocabulary
com.ibm.adtech.jastor.JastorException
phenotypeProperty
void setPhenotype(PhenotypeVocabulary phenotype) throws com.ibm.adtech.jastor.JastorException
{@link
- fr.curie.BiNoM.pathways.biopax.PhenotypeVocabulary}com.ibm.adtech.jastor.JastorException
phenotypeProperty
PhenotypeVocabulary setPhenotype() throws com.ibm.adtech.jastor.JastorException
PhenotypeVocabulary
, the created valuecom.ibm.adtech.jastor.JastorException
phenotypeProperty
PhenotypeVocabulary setPhenotype(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
PhenotypeVocabulary
with the factory.
and calling setPhenotype(fr.curie.BiNoM.pathways.biopax.PhenotypeVocabulary phenotype)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#PhenotypeVocabulary. That is, this method
should not be used as a shortcut for creating new objects in the model.{@link
- com.hp.hpl.jena.rdf.model.Resource} must not be be null.PhenotypeVocabulary
, the newly created valuecom.ibm.adtech.jastor.JastorException
phenotypeProperty