public class FormatProteinNotes
extends java.lang.Object
Modifier and Type | Field and Description |
---|---|
protected fr.curie.BiNoM.pathways.navicell.ProduceClickableMap.AtlasInfo |
atlasInfo |
protected static java.lang.String[] |
colours |
protected java.util.regex.Pattern |
pat_bubble |
protected java.util.regex.Pattern |
pat_generic |
protected java.util.regex.Pattern |
pat_pmid |
protected java.util.HashMap<java.lang.String,java.util.regex.Pattern> |
xref_patterns |
protected java.lang.String[][] |
xrefs |
Constructor and Description |
---|
FormatProteinNotes(java.util.Set<java.lang.String> modules,
fr.curie.BiNoM.pathways.navicell.ProduceClickableMap.AtlasInfo atlasInfo,
java.lang.String[][] xrefs,
java.lang.String blog_name) |
Modifier and Type | Method and Description |
---|---|
protected static boolean |
isValidEntry(java.lang.String[] entry,
int ind) |
protected static java.lang.String |
substitute(java.lang.String val,
java.util.HashMap<java.lang.String,java.lang.String> value_map) |
protected java.lang.String[][] xrefs
protected java.util.HashMap<java.lang.String,java.util.regex.Pattern> xref_patterns
protected fr.curie.BiNoM.pathways.navicell.ProduceClickableMap.AtlasInfo atlasInfo
protected java.util.regex.Pattern pat_generic
protected java.util.regex.Pattern pat_bubble
protected java.util.regex.Pattern pat_pmid
protected static final java.lang.String[] colours