public class DatabaseComparison
extends java.lang.Object
Constructor and Description |
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DatabaseComparison() |
Modifier and Type | Method and Description |
---|---|
Graph |
addAssociatedReactionNetworkToGraphFromIndex(Graph query,
Graph index) |
java.util.HashMap<java.lang.String,java.util.Vector<java.lang.String>> |
BioPAXEntityReactionDistribution(Graph indexFile,
java.lang.String containsString,
boolean verbose) |
Graph |
createIndexForBioPAX(BioPAX biopax) |
java.util.Vector<java.lang.String> |
extractPubMedIds(Graph index) |
static void |
main(java.lang.String[] args) |
Graph |
selectAllReferencesType(Graph index,
java.lang.String refType) |
Graph |
selectEntityReferencesByXREFList(Graph index,
java.util.Vector<java.lang.String> ids,
java.lang.String db) |
public static void main(java.lang.String[] args)
args
- public Graph createIndexForBioPAX(BioPAX biopax) throws java.lang.Exception
java.lang.Exception
public java.util.HashMap<java.lang.String,java.util.Vector<java.lang.String>> BioPAXEntityReactionDistribution(Graph indexFile, java.lang.String containsString, boolean verbose)
public Graph selectEntityReferencesByXREFList(Graph index, java.util.Vector<java.lang.String> ids, java.lang.String db)
public Graph addAssociatedReactionNetworkToGraphFromIndex(Graph query, Graph index)
public java.util.Vector<java.lang.String> extractPubMedIds(Graph index)