public class CytoscapeToBioPAXConverter
extends java.lang.Object
Constructor and Description |
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CytoscapeToBioPAXConverter() |
Modifier and Type | Method and Description |
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static BioPAX |
convert(GraphDocument graph,
BioPAX biopax) |
static void |
filterIDs(BioPAX biopax,
GraphDocument gr) |
static void |
filterIDs(BioPAX biopax,
java.util.Vector species,
java.util.Vector reactions) |
static void |
filterPathwaySteps(BioPAX biopax,
java.util.HashMap interactions,
java.util.HashMap pathwaySteps,
java.util.HashMap pathwayStepsRemove) |
static java.lang.String |
getControlledURI(Control cntrl) |
static void |
removeConversion(Conversion br,
java.util.HashMap participants,
java.util.HashMap allparticipants,
java.util.Vector reactions,
java.util.HashMap interactions,
BioPAXToSBMLConverter b2s) |
public static BioPAX convert(GraphDocument graph, BioPAX biopax) throws java.lang.Exception
java.lang.Exception
public static void filterIDs(BioPAX biopax, GraphDocument gr) throws java.lang.Exception
java.lang.Exception
public static void filterIDs(BioPAX biopax, java.util.Vector species, java.util.Vector reactions) throws java.lang.Exception
java.lang.Exception
public static void removeConversion(Conversion br, java.util.HashMap participants, java.util.HashMap allparticipants, java.util.Vector reactions, java.util.HashMap interactions, BioPAXToSBMLConverter b2s) throws java.lang.Exception
java.lang.Exception
public static java.lang.String getControlledURI(Control cntrl) throws java.lang.Exception
java.lang.Exception
public static void filterPathwaySteps(BioPAX biopax, java.util.HashMap interactions, java.util.HashMap pathwaySteps, java.util.HashMap pathwayStepsRemove) throws java.lang.Exception
java.lang.Exception