public class ProduceClickableMap
extends java.lang.Object
Modifier and Type | Class and Description |
---|---|
static class |
ProduceClickableMap.NaviCellException |
Modifier and Type | Field and Description |
---|---|
SbmlDocument |
cd |
static java.lang.String |
scriptFile |
java.util.HashMap<java.lang.String,java.lang.String> |
speciesModularModuleNameMap |
Constructor and Description |
---|
ProduceClickableMap(java.lang.String blog_name,
java.io.File input) |
Modifier and Type | Method and Description |
---|---|
static boolean |
isSymlink(java.io.File file) |
static java.util.Properties |
load_config(java.io.File config) |
static java.lang.String[][] |
load_xrefs(java.io.BufferedReader xref_stream,
java.lang.String xref_file) |
void |
loadCellDesigner(java.lang.String fn) |
static void |
main(java.lang.String[] args) |
static java.io.BufferedReader |
open_file(java.io.File filename) |
static java.io.BufferedReader |
open_local_file(java.lang.String filename) |
static void |
run(java.lang.String base,
java.io.File source_directory,
boolean make_tiles,
boolean only_tiles,
java.lang.String project_name,
fr.curie.BiNoM.pathways.navicell.ProduceClickableMap.AtlasInfo atlasInfo,
java.lang.String[][] xrefs,
boolean show_default_compartement_name,
java.lang.String wordpress_server,
java.lang.String wordpress_passwd,
java.lang.String wordpress_user,
java.lang.String wordpress_blogname,
java.io.File root,
boolean provide_sources) |
public SbmlDocument cd
public final java.util.HashMap<java.lang.String,java.lang.String> speciesModularModuleNameMap
public static java.lang.String scriptFile
public ProduceClickableMap(java.lang.String blog_name, java.io.File input)
public static void main(java.lang.String[] args)
public static void run(java.lang.String base, java.io.File source_directory, boolean make_tiles, boolean only_tiles, java.lang.String project_name, fr.curie.BiNoM.pathways.navicell.ProduceClickableMap.AtlasInfo atlasInfo, java.lang.String[][] xrefs, boolean show_default_compartement_name, java.lang.String wordpress_server, java.lang.String wordpress_passwd, java.lang.String wordpress_user, java.lang.String wordpress_blogname, java.io.File root, boolean provide_sources) throws ProduceClickableMap.NaviCellException, java.io.IOException
ProduceClickableMap.NaviCellException
java.io.IOException
public static java.util.Properties load_config(java.io.File config)
public static boolean isSymlink(java.io.File file) throws java.io.IOException
java.io.IOException
public void loadCellDesigner(java.lang.String fn)
public static java.io.BufferedReader open_file(java.io.File filename)
public static java.io.BufferedReader open_local_file(java.lang.String filename)
public static java.lang.String[][] load_xrefs(java.io.BufferedReader xref_stream, java.lang.String xref_file)