public class BiochemicalReactionImpl extends com.ibm.adtech.jastor.ThingImpl implements BiochemicalReaction
BiochemicalReaction
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level3_DOT_owlFactory to create instances of this class.
(URI: http://www.biopax.org/release/biopax-level3.owl#BiochemicalReaction)
TYPE
Modifier and Type | Method and Description |
---|---|
void |
addAvailability(java.lang.String availability)
Add a 'availability' property value
|
void |
addComment(java.lang.String comment)
Add a 'comment' property value
|
Provenance |
addDataSource()
Adds an anonymous value for the 'dataSource' property
|
Provenance |
addDataSource(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'dataSource' property
|
void |
addDataSource(Provenance dataSource)
Adds a value for the 'dataSource' property
|
DeltaG |
addDeltaG()
Adds an anonymous value for the 'deltaG' property
|
DeltaG |
addDeltaG(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'deltaG' property
|
void |
addDeltaG(DeltaG deltaG)
Adds a value for the 'deltaG' property
|
void |
addDeltaH(java.lang.Float deltaH)
Add a 'deltaH' property value
|
void |
addDeltaS(java.lang.Float deltaS)
Add a 'deltaS' property value
|
void |
addECNumber(java.lang.String eCNumber)
Add a 'eCNumber' property value
|
void |
addedStatement(com.hp.hpl.jena.rdf.model.Statement stmt) |
Evidence |
addEvidence()
Adds an anonymous value for the 'evidence' property
|
Evidence |
addEvidence(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'evidence' property
|
void |
addEvidence(Evidence evidence)
Adds a value for the 'evidence' property
|
KPrime |
addKEQ()
Adds an anonymous value for the 'kEQ' property
|
KPrime |
addKEQ(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'kEQ' property
|
void |
addKEQ(KPrime kEQ)
Adds a value for the 'kEQ' property
|
PhysicalEntity |
addLeft()
Adds an anonymous value for the 'left' property
|
PhysicalEntity |
addLeft(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'left' property
|
void |
addLeft(PhysicalEntity left)
Adds a value for the 'left' property
|
void |
addName(java.lang.String name)
Add a 'name' property value
|
PhysicalEntity |
addParticipant_asPhysicalEntity()
Adds an anonymous value for the 'participant' property
|
PhysicalEntity |
addParticipant_asPhysicalEntity(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'participant' property.
|
Entity |
addParticipant()
Adds an anonymous value for the 'participant' property
|
Entity |
addParticipant(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'participant' property
|
void |
addParticipant(Entity participant)
Adds a value for the 'participant' property
|
Stoichiometry |
addParticipantStoichiometry()
Adds an anonymous value for the 'participantStoichiometry' property
|
Stoichiometry |
addParticipantStoichiometry(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'participantStoichiometry' property
|
void |
addParticipantStoichiometry(Stoichiometry participantStoichiometry)
Adds a value for the 'participantStoichiometry' property
|
PhysicalEntity |
addRight()
Adds an anonymous value for the 'right' property
|
PhysicalEntity |
addRight(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'right' property
|
void |
addRight(PhysicalEntity right)
Adds a value for the 'right' property
|
Xref |
addXref()
Adds an anonymous value for the 'xref' property
|
Xref |
addXref(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'xref' property
|
void |
addXref(Xref xref)
Adds a value for the 'xref' property
|
void |
clearCache() |
java.util.Iterator |
getAvailability()
Iterates through the 'availability' property values.
|
java.util.Iterator |
getComment()
Iterates through the 'comment' property values.
|
java.lang.String |
getConversionDirection()
Gets the 'conversionDirection' property value
|
java.util.Iterator |
getDataSource()
Get an Iterator the 'dataSource' property values.
|
java.util.Iterator |
getDeltaG()
Get an Iterator the 'deltaG' property values.
|
java.util.Iterator |
getDeltaH()
Iterates through the 'deltaH' property values.
|
java.util.Iterator |
getDeltaS()
Iterates through the 'deltaS' property values.
|
java.util.Iterator |
getECNumber()
Iterates through the 'eCNumber' property values.
|
java.util.Iterator |
getEvidence()
Get an Iterator the 'evidence' property values.
|
InteractionVocabulary |
getInteractionType()
Gets the 'interactionType' property value
|
java.util.Iterator |
getKEQ()
Get an Iterator the 'kEQ' property values.
|
java.util.Iterator |
getLeft()
Get an Iterator the 'left' property values.
|
java.util.Iterator |
getName()
Iterates through the 'name' property values.
|
java.util.Iterator |
getParticipant_asPhysicalEntity()
Get an Iterator the 'participant' property values.
|
java.util.Iterator |
getParticipant()
Get an Iterator the 'participant' property values.
|
java.util.Iterator |
getParticipantStoichiometry()
Get an Iterator the 'participantStoichiometry' property values.
|
java.util.Iterator |
getRight()
Get an Iterator the 'right' property values.
|
java.lang.Boolean |
getSpontaneous()
Gets the 'spontaneous' property value
|
java.util.Iterator |
getXref()
Get an Iterator the 'xref' property values.
|
java.util.List |
listStatements() |
void |
registerListener(ThingListener listener) |
void |
removeAvailability(java.lang.String availability)
Remove a 'availability' property value.
|
void |
removeComment(java.lang.String comment)
Remove a 'comment' property value.
|
void |
removeDataSource(Provenance dataSource)
Removes a value for the 'dataSource' property.
|
void |
removeDeltaG(DeltaG deltaG)
Removes a value for the 'deltaG' property.
|
void |
removeDeltaH(java.lang.Float deltaH)
Remove a 'deltaH' property value.
|
void |
removeDeltaS(java.lang.Float deltaS)
Remove a 'deltaS' property value.
|
void |
removedStatement(com.hp.hpl.jena.rdf.model.Statement stmt) |
void |
removeECNumber(java.lang.String eCNumber)
Remove a 'eCNumber' property value.
|
void |
removeEvidence(Evidence evidence)
Removes a value for the 'evidence' property.
|
void |
removeKEQ(KPrime kEQ)
Removes a value for the 'kEQ' property.
|
void |
removeLeft(PhysicalEntity left)
Removes a value for the 'left' property.
|
void |
removeName(java.lang.String name)
Remove a 'name' property value.
|
void |
removeParticipant(Entity participant)
Removes a value for the 'participant' property.
|
void |
removeParticipant(PhysicalEntity participant)
Removes a value for the 'participant' property.
|
void |
removeParticipantStoichiometry(Stoichiometry participantStoichiometry)
Removes a value for the 'participantStoichiometry' property.
|
void |
removeRight(PhysicalEntity right)
Removes a value for the 'right' property.
|
void |
removeXref(Xref xref)
Removes a value for the 'xref' property.
|
void |
setConversionDirection(java.lang.String conversionDirection)
Sets the 'conversionDirection' property value
|
InteractionVocabulary |
setInteractionType()
Sets the 'interactionType' property value to an anonymous node
|
InteractionVocabulary |
setInteractionType(com.hp.hpl.jena.rdf.model.Resource resource)
Sets the 'interactionType' property value
|
void |
setInteractionType(InteractionVocabulary interactionType)
Sets the 'interactionType' property value
|
void |
setSpontaneous(java.lang.Boolean spontaneous)
Sets the 'spontaneous' property value
|
void |
unregisterListener(ThingListener listener) |
public java.util.List listStatements()
public void clearCache()
public java.util.Iterator getDataSource() throws JastorException
Entity
getDataSource
in interface Entity
Iterator
of Provenance
JastorException
Entity.dataSourceProperty
public void addDataSource(Provenance dataSource) throws JastorException
Entity
addDataSource
in interface Entity
JastorException
Entity.dataSourceProperty
public Provenance addDataSource() throws JastorException
Entity
addDataSource
in interface Entity
Provenance
createdJastorException
Entity.dataSourceProperty
public Provenance addDataSource(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Entity
addDataSource
in interface Entity
JastorException
Entity.dataSourceProperty
public void removeDataSource(Provenance dataSource) throws JastorException
Entity
removeDataSource
in interface Entity
JastorException
Entity.dataSourceProperty
public java.util.Iterator getAvailability() throws JastorException
Entity
getAvailability
in interface Entity
Iterator
of String
JastorException
Entity.availabilityProperty
public void addAvailability(java.lang.String availability) throws JastorException
Entity
addAvailability
in interface Entity
JastorException
Entity.availabilityProperty
public void removeAvailability(java.lang.String availability) throws JastorException
Entity
removeAvailability
in interface Entity
JastorException
Entity.availabilityProperty
public java.util.Iterator getComment() throws JastorException
Entity
getComment
in interface Entity
Iterator
of String
JastorException
Entity.commentProperty
public void addComment(java.lang.String comment) throws JastorException
Entity
addComment
in interface Entity
JastorException
Entity.commentProperty
public void removeComment(java.lang.String comment) throws JastorException
Entity
removeComment
in interface Entity
JastorException
Entity.commentProperty
public java.util.Iterator getName() throws JastorException
Entity
getName
in interface Entity
Iterator
of String
JastorException
Entity.nameProperty
public void addName(java.lang.String name) throws JastorException
Entity
addName
in interface Entity
JastorException
Entity.nameProperty
public void removeName(java.lang.String name) throws JastorException
Entity
removeName
in interface Entity
JastorException
Entity.nameProperty
public java.util.Iterator getEvidence() throws JastorException
Entity
getEvidence
in interface Entity
Iterator
of Evidence
JastorException
Entity.evidenceProperty
public void addEvidence(Evidence evidence) throws JastorException
Entity
addEvidence
in interface Entity
JastorException
Entity.evidenceProperty
public Evidence addEvidence() throws JastorException
Entity
addEvidence
in interface Entity
Evidence
createdJastorException
Entity.evidenceProperty
public Evidence addEvidence(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Entity
addEvidence
in interface Entity
JastorException
Entity.evidenceProperty
public void removeEvidence(Evidence evidence) throws JastorException
Entity
removeEvidence
in interface Entity
JastorException
Entity.evidenceProperty
public java.util.Iterator getXref() throws JastorException
Entity
getXref
in interface Entity
Iterator
of Xref
JastorException
Entity.xrefProperty
public void addXref(Xref xref) throws JastorException
Entity
addXref
in interface Entity
JastorException
Entity.xrefProperty
public Xref addXref() throws JastorException
Entity
addXref
in interface Entity
Xref
createdJastorException
Entity.xrefProperty
public Xref addXref(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Entity
addXref
in interface Entity
JastorException
Entity.xrefProperty
public void removeXref(Xref xref) throws JastorException
Entity
removeXref
in interface Entity
JastorException
Entity.xrefProperty
public InteractionVocabulary getInteractionType() throws JastorException
Interaction
getInteractionType
in interface Interaction
InteractionVocabulary
JastorException
Interaction.interactionTypeProperty
public void setInteractionType(InteractionVocabulary interactionType) throws JastorException
Interaction
setInteractionType
in interface Interaction
JastorException
Interaction.interactionTypeProperty
public InteractionVocabulary setInteractionType() throws JastorException
Interaction
setInteractionType
in interface Interaction
InteractionVocabulary
, the created valueJastorException
Interaction.interactionTypeProperty
public InteractionVocabulary setInteractionType(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Interaction
setInteractionType
in interface Interaction
JastorException
Interaction.interactionTypeProperty
public java.util.Iterator getParticipant() throws JastorException
Interaction
getParticipant
in interface Interaction
Iterator
of Entity
JastorException
Interaction.participantProperty
public void addParticipant(Entity participant) throws JastorException
Interaction
addParticipant
in interface Interaction
JastorException
Interaction.participantProperty
public Entity addParticipant() throws JastorException
Interaction
addParticipant
in interface Interaction
Entity
createdJastorException
Interaction.participantProperty
public Entity addParticipant(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Conversion
addParticipant
in interface Conversion
addParticipant
in interface Interaction
JastorException
Interaction.participantProperty
public void removeParticipant(Entity participant) throws JastorException
Interaction
removeParticipant
in interface Interaction
JastorException
Interaction.participantProperty
public java.util.Iterator getParticipant_asPhysicalEntity() throws JastorException
Conversion
getParticipant_asPhysicalEntity
in interface Conversion
Iterator
of PhysicalEntity
JastorException
Interaction.participantProperty
public PhysicalEntity addParticipant_asPhysicalEntity() throws JastorException
Conversion
addParticipant_asPhysicalEntity
in interface Conversion
PhysicalEntity
createdJastorException
Interaction.participantProperty
public PhysicalEntity addParticipant_asPhysicalEntity(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Conversion
PhysicalEntity
with the factory
and calling addParticipant(fr.curie.BiNoM.pathways.biopax.PhysicalEntity participant)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#PhysicalEntity. That is, this method
should not be used as a shortcut for creating new objects in the model.addParticipant_asPhysicalEntity
in interface Conversion
JastorException
Interaction.participantProperty
public void removeParticipant(PhysicalEntity participant) throws JastorException
Conversion
removeParticipant
in interface Conversion
JastorException
Interaction.participantProperty
public java.util.Iterator getParticipantStoichiometry() throws JastorException
Conversion
getParticipantStoichiometry
in interface Conversion
Iterator
of Stoichiometry
JastorException
Conversion.participantStoichiometryProperty
public void addParticipantStoichiometry(Stoichiometry participantStoichiometry) throws JastorException
Conversion
addParticipantStoichiometry
in interface Conversion
JastorException
Conversion.participantStoichiometryProperty
public Stoichiometry addParticipantStoichiometry() throws JastorException
Conversion
addParticipantStoichiometry
in interface Conversion
Stoichiometry
createdJastorException
Conversion.participantStoichiometryProperty
public Stoichiometry addParticipantStoichiometry(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Conversion
addParticipantStoichiometry
in interface Conversion
JastorException
Conversion.participantStoichiometryProperty
public void removeParticipantStoichiometry(Stoichiometry participantStoichiometry) throws JastorException
Conversion
removeParticipantStoichiometry
in interface Conversion
JastorException
Conversion.participantStoichiometryProperty
public java.lang.Boolean getSpontaneous() throws JastorException
Conversion
getSpontaneous
in interface Conversion
Boolean
JastorException
Conversion.spontaneousProperty
public void setSpontaneous(java.lang.Boolean spontaneous) throws JastorException
Conversion
setSpontaneous
in interface Conversion
JastorException
Conversion.spontaneousProperty
public java.util.Iterator getLeft() throws JastorException
Conversion
getLeft
in interface Conversion
Iterator
of PhysicalEntity
JastorException
Conversion.leftProperty
public void addLeft(PhysicalEntity left) throws JastorException
Conversion
addLeft
in interface Conversion
JastorException
Conversion.leftProperty
public PhysicalEntity addLeft() throws JastorException
Conversion
addLeft
in interface Conversion
PhysicalEntity
createdJastorException
Conversion.leftProperty
public PhysicalEntity addLeft(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Conversion
addLeft
in interface Conversion
JastorException
Conversion.leftProperty
public void removeLeft(PhysicalEntity left) throws JastorException
Conversion
removeLeft
in interface Conversion
JastorException
Conversion.leftProperty
public java.lang.String getConversionDirection() throws JastorException
Conversion
getConversionDirection
in interface Conversion
String
JastorException
Conversion.conversionDirectionProperty
public void setConversionDirection(java.lang.String conversionDirection) throws JastorException
Conversion
setConversionDirection
in interface Conversion
JastorException
Conversion.conversionDirectionProperty
public java.util.Iterator getRight() throws JastorException
Conversion
getRight
in interface Conversion
Iterator
of PhysicalEntity
JastorException
Conversion.rightProperty
public void addRight(PhysicalEntity right) throws JastorException
Conversion
addRight
in interface Conversion
JastorException
Conversion.rightProperty
public PhysicalEntity addRight() throws JastorException
Conversion
addRight
in interface Conversion
PhysicalEntity
createdJastorException
Conversion.rightProperty
public PhysicalEntity addRight(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Conversion
addRight
in interface Conversion
JastorException
Conversion.rightProperty
public void removeRight(PhysicalEntity right) throws JastorException
Conversion
removeRight
in interface Conversion
JastorException
Conversion.rightProperty
public java.util.Iterator getDeltaG() throws JastorException
BiochemicalReaction
getDeltaG
in interface BiochemicalReaction
Iterator
of DeltaG
JastorException
BiochemicalReaction.deltaGProperty
public void addDeltaG(DeltaG deltaG) throws JastorException
BiochemicalReaction
addDeltaG
in interface BiochemicalReaction
JastorException
BiochemicalReaction.deltaGProperty
public DeltaG addDeltaG() throws JastorException
BiochemicalReaction
addDeltaG
in interface BiochemicalReaction
DeltaG
createdJastorException
BiochemicalReaction.deltaGProperty
public DeltaG addDeltaG(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
BiochemicalReaction
addDeltaG
in interface BiochemicalReaction
JastorException
BiochemicalReaction.deltaGProperty
public void removeDeltaG(DeltaG deltaG) throws JastorException
BiochemicalReaction
removeDeltaG
in interface BiochemicalReaction
JastorException
BiochemicalReaction.deltaGProperty
public java.util.Iterator getDeltaH() throws JastorException
BiochemicalReaction
getDeltaH
in interface BiochemicalReaction
Iterator
of Float
JastorException
BiochemicalReaction.deltaHProperty
public void addDeltaH(java.lang.Float deltaH) throws JastorException
BiochemicalReaction
addDeltaH
in interface BiochemicalReaction
JastorException
BiochemicalReaction.deltaHProperty
public void removeDeltaH(java.lang.Float deltaH) throws JastorException
BiochemicalReaction
removeDeltaH
in interface BiochemicalReaction
JastorException
BiochemicalReaction.deltaHProperty
public java.util.Iterator getKEQ() throws JastorException
BiochemicalReaction
getKEQ
in interface BiochemicalReaction
Iterator
of KPrime
JastorException
BiochemicalReaction.kEQProperty
public void addKEQ(KPrime kEQ) throws JastorException
BiochemicalReaction
addKEQ
in interface BiochemicalReaction
JastorException
BiochemicalReaction.kEQProperty
public KPrime addKEQ() throws JastorException
BiochemicalReaction
addKEQ
in interface BiochemicalReaction
KPrime
createdJastorException
BiochemicalReaction.kEQProperty
public KPrime addKEQ(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
BiochemicalReaction
addKEQ
in interface BiochemicalReaction
JastorException
BiochemicalReaction.kEQProperty
public void removeKEQ(KPrime kEQ) throws JastorException
BiochemicalReaction
removeKEQ
in interface BiochemicalReaction
JastorException
BiochemicalReaction.kEQProperty
public java.util.Iterator getECNumber() throws JastorException
BiochemicalReaction
getECNumber
in interface BiochemicalReaction
Iterator
of String
JastorException
BiochemicalReaction.eCNumberProperty
public void addECNumber(java.lang.String eCNumber) throws JastorException
BiochemicalReaction
addECNumber
in interface BiochemicalReaction
JastorException
BiochemicalReaction.eCNumberProperty
public void removeECNumber(java.lang.String eCNumber) throws JastorException
BiochemicalReaction
removeECNumber
in interface BiochemicalReaction
JastorException
BiochemicalReaction.eCNumberProperty
public java.util.Iterator getDeltaS() throws JastorException
BiochemicalReaction
getDeltaS
in interface BiochemicalReaction
Iterator
of Float
JastorException
BiochemicalReaction.deltaSProperty
public void addDeltaS(java.lang.Float deltaS) throws JastorException
BiochemicalReaction
addDeltaS
in interface BiochemicalReaction
JastorException
BiochemicalReaction.deltaSProperty
public void removeDeltaS(java.lang.Float deltaS) throws JastorException
BiochemicalReaction
removeDeltaS
in interface BiochemicalReaction
JastorException
BiochemicalReaction.deltaSProperty
public void registerListener(ThingListener listener)
public void unregisterListener(ThingListener listener)
public void addedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)
public void removedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)