public class ModulationImpl extends com.ibm.adtech.jastor.ThingImpl implements Modulation
Modulation
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level3_DOT_owlFactory to create instances of this class.
(URI: http://www.biopax.org/release/biopax-level3.owl#Modulation)
TYPE
Modifier and Type | Method and Description |
---|---|
void |
addAvailability(java.lang.String availability)
Add a 'availability' property value
|
void |
addComment(java.lang.String comment)
Add a 'comment' property value
|
Pathway |
addController_asPathway()
Adds an anonymous value for the 'controller' property
|
Pathway |
addController_asPathway(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'controller' property.
|
PhysicalEntity |
addController_asPhysicalEntity()
Adds an anonymous value for the 'controller' property
|
PhysicalEntity |
addController_asPhysicalEntity(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'controller' property.
|
void |
addController(Pathway controller)
Adds a value for the 'controller' property
|
void |
addController(PhysicalEntity controller)
Adds a value for the 'controller' property
|
Provenance |
addDataSource()
Adds an anonymous value for the 'dataSource' property
|
Provenance |
addDataSource(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'dataSource' property
|
void |
addDataSource(Provenance dataSource)
Adds a value for the 'dataSource' property
|
void |
addedStatement(com.hp.hpl.jena.rdf.model.Statement stmt) |
Evidence |
addEvidence()
Adds an anonymous value for the 'evidence' property
|
Evidence |
addEvidence(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'evidence' property
|
void |
addEvidence(Evidence evidence)
Adds a value for the 'evidence' property
|
void |
addName(java.lang.String name)
Add a 'name' property value
|
Entity |
addParticipant()
Adds an anonymous value for the 'participant' property
|
Entity |
addParticipant(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'participant' property
|
void |
addParticipant(Entity participant)
Adds a value for the 'participant' property
|
Xref |
addXref()
Adds an anonymous value for the 'xref' property
|
Xref |
addXref(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'xref' property
|
void |
addXref(Xref xref)
Adds a value for the 'xref' property
|
void |
clearCache() |
java.util.Iterator |
getAvailability()
Iterates through the 'availability' property values.
|
java.util.Iterator |
getComment()
Iterates through the 'comment' property values.
|
Catalysis |
getControlled_asCatalysis()
Gets the 'controlled' property value
|
Interaction |
getControlled_asInteraction()
Gets the 'controlled' property value
|
Pathway |
getControlled_asPathway()
Gets the 'controlled' property value
|
java.util.Iterator |
getController_asPathway()
Get an Iterator the 'controller' property values.
|
java.util.Iterator |
getController_asPhysicalEntity()
Get an Iterator the 'controller' property values.
|
java.lang.String |
getControlType()
Gets the 'controlType' property value
|
java.util.Iterator |
getDataSource()
Get an Iterator the 'dataSource' property values.
|
java.util.Iterator |
getEvidence()
Get an Iterator the 'evidence' property values.
|
InteractionVocabulary |
getInteractionType()
Gets the 'interactionType' property value
|
java.util.Iterator |
getName()
Iterates through the 'name' property values.
|
java.util.Iterator |
getParticipant()
Get an Iterator the 'participant' property values.
|
java.util.Iterator |
getXref()
Get an Iterator the 'xref' property values.
|
java.util.List |
listStatements() |
void |
registerListener(ThingListener listener) |
void |
removeAvailability(java.lang.String availability)
Remove a 'availability' property value.
|
void |
removeComment(java.lang.String comment)
Remove a 'comment' property value.
|
void |
removeController(Pathway controller)
Removes a value for the 'controller' property.
|
void |
removeController(PhysicalEntity controller)
Removes a value for the 'controller' property.
|
void |
removeDataSource(Provenance dataSource)
Removes a value for the 'dataSource' property.
|
void |
removedStatement(com.hp.hpl.jena.rdf.model.Statement stmt) |
void |
removeEvidence(Evidence evidence)
Removes a value for the 'evidence' property.
|
void |
removeName(java.lang.String name)
Remove a 'name' property value.
|
void |
removeParticipant(Entity participant)
Removes a value for the 'participant' property.
|
void |
removeXref(Xref xref)
Removes a value for the 'xref' property.
|
Catalysis |
setControlled_asCatalysis()
Sets the 'controlled' property value to an anonymous node
|
Catalysis |
setControlled_asCatalysis(com.hp.hpl.jena.rdf.model.Resource resource)
Sets the 'controlled' property value to the given resource, and add's rdf:type properties.
|
Interaction |
setControlled_asInteraction()
Sets the 'controlled' property value to an anonymous node
|
Interaction |
setControlled_asInteraction(com.hp.hpl.jena.rdf.model.Resource resource)
Sets the 'controlled' property value to the given resource, and add's rdf:type properties.
|
Pathway |
setControlled_asPathway()
Sets the 'controlled' property value to an anonymous node
|
Pathway |
setControlled_asPathway(com.hp.hpl.jena.rdf.model.Resource resource)
Sets the 'controlled' property value to the given resource, and add's rdf:type properties.
|
void |
setControlled(Catalysis controlled)
Sets the 'controlled' property value
|
void |
setControlled(Interaction controlled)
Sets the 'controlled' property value
|
void |
setControlled(Pathway controlled)
Sets the 'controlled' property value
|
void |
setControlType(java.lang.String controlType)
Sets the 'controlType' property value
|
InteractionVocabulary |
setInteractionType()
Sets the 'interactionType' property value to an anonymous node
|
InteractionVocabulary |
setInteractionType(com.hp.hpl.jena.rdf.model.Resource resource)
Sets the 'interactionType' property value
|
void |
setInteractionType(InteractionVocabulary interactionType)
Sets the 'interactionType' property value
|
void |
unregisterListener(ThingListener listener) |
public java.util.List listStatements()
public void clearCache()
public java.util.Iterator getDataSource() throws JastorException
Entity
getDataSource
in interface Entity
Iterator
of Provenance
JastorException
Entity.dataSourceProperty
public void addDataSource(Provenance dataSource) throws JastorException
Entity
addDataSource
in interface Entity
JastorException
Entity.dataSourceProperty
public Provenance addDataSource() throws JastorException
Entity
addDataSource
in interface Entity
Provenance
createdJastorException
Entity.dataSourceProperty
public Provenance addDataSource(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Entity
addDataSource
in interface Entity
JastorException
Entity.dataSourceProperty
public void removeDataSource(Provenance dataSource) throws JastorException
Entity
removeDataSource
in interface Entity
JastorException
Entity.dataSourceProperty
public java.util.Iterator getAvailability() throws JastorException
Entity
getAvailability
in interface Entity
Iterator
of String
JastorException
Entity.availabilityProperty
public void addAvailability(java.lang.String availability) throws JastorException
Entity
addAvailability
in interface Entity
JastorException
Entity.availabilityProperty
public void removeAvailability(java.lang.String availability) throws JastorException
Entity
removeAvailability
in interface Entity
JastorException
Entity.availabilityProperty
public java.util.Iterator getComment() throws JastorException
Entity
getComment
in interface Entity
Iterator
of String
JastorException
Entity.commentProperty
public void addComment(java.lang.String comment) throws JastorException
Entity
addComment
in interface Entity
JastorException
Entity.commentProperty
public void removeComment(java.lang.String comment) throws JastorException
Entity
removeComment
in interface Entity
JastorException
Entity.commentProperty
public java.util.Iterator getName() throws JastorException
Entity
getName
in interface Entity
Iterator
of String
JastorException
Entity.nameProperty
public void addName(java.lang.String name) throws JastorException
Entity
addName
in interface Entity
JastorException
Entity.nameProperty
public void removeName(java.lang.String name) throws JastorException
Entity
removeName
in interface Entity
JastorException
Entity.nameProperty
public java.util.Iterator getEvidence() throws JastorException
Entity
getEvidence
in interface Entity
Iterator
of Evidence
JastorException
Entity.evidenceProperty
public void addEvidence(Evidence evidence) throws JastorException
Entity
addEvidence
in interface Entity
JastorException
Entity.evidenceProperty
public Evidence addEvidence() throws JastorException
Entity
addEvidence
in interface Entity
Evidence
createdJastorException
Entity.evidenceProperty
public Evidence addEvidence(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Entity
addEvidence
in interface Entity
JastorException
Entity.evidenceProperty
public void removeEvidence(Evidence evidence) throws JastorException
Entity
removeEvidence
in interface Entity
JastorException
Entity.evidenceProperty
public java.util.Iterator getXref() throws JastorException
Entity
getXref
in interface Entity
Iterator
of Xref
JastorException
Entity.xrefProperty
public void addXref(Xref xref) throws JastorException
Entity
addXref
in interface Entity
JastorException
Entity.xrefProperty
public Xref addXref() throws JastorException
Entity
addXref
in interface Entity
Xref
createdJastorException
Entity.xrefProperty
public Xref addXref(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Entity
addXref
in interface Entity
JastorException
Entity.xrefProperty
public void removeXref(Xref xref) throws JastorException
Entity
removeXref
in interface Entity
JastorException
Entity.xrefProperty
public InteractionVocabulary getInteractionType() throws JastorException
Interaction
getInteractionType
in interface Interaction
InteractionVocabulary
JastorException
Interaction.interactionTypeProperty
public void setInteractionType(InteractionVocabulary interactionType) throws JastorException
Interaction
setInteractionType
in interface Interaction
JastorException
Interaction.interactionTypeProperty
public InteractionVocabulary setInteractionType() throws JastorException
Interaction
setInteractionType
in interface Interaction
InteractionVocabulary
, the created valueJastorException
Interaction.interactionTypeProperty
public InteractionVocabulary setInteractionType(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Interaction
setInteractionType
in interface Interaction
JastorException
Interaction.interactionTypeProperty
public java.util.Iterator getParticipant() throws JastorException
Interaction
getParticipant
in interface Interaction
Iterator
of Entity
JastorException
Interaction.participantProperty
public void addParticipant(Entity participant) throws JastorException
Interaction
addParticipant
in interface Interaction
JastorException
Interaction.participantProperty
public Entity addParticipant() throws JastorException
Interaction
addParticipant
in interface Interaction
Entity
createdJastorException
Interaction.participantProperty
public Entity addParticipant(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Interaction
addParticipant
in interface Interaction
JastorException
Interaction.participantProperty
public void removeParticipant(Entity participant) throws JastorException
Interaction
removeParticipant
in interface Interaction
JastorException
Interaction.participantProperty
public Catalysis getControlled_asCatalysis() throws JastorException
Modulation
getControlled_asCatalysis
in interface Modulation
Catalysis
JastorException
Control.controlledProperty
public void setControlled(Catalysis controlled) throws JastorException
Modulation
setControlled
in interface Modulation
JastorException
Control.controlledProperty
public Catalysis setControlled_asCatalysis() throws JastorException
Modulation
setControlled_asCatalysis
in interface Modulation
Catalysis
, the created valueJastorException
Control.controlledProperty
public Catalysis setControlled_asCatalysis(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Modulation
Catalysis
with the factory.
and calling setControlled(fr.curie.BiNoM.pathways.biopax.Catalysis controlled)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#Catalysis. That is, this method
should not be used as a shortcut for creating new objects in the model.setControlled_asCatalysis
in interface Modulation
Catalysis
, the newly created valueJastorException
Control.controlledProperty
public Interaction getControlled_asInteraction() throws JastorException
Control
getControlled_asInteraction
in interface Control
Interaction
JastorException
Control.controlledProperty
public void setControlled(Interaction controlled) throws JastorException
Control
setControlled
in interface Control
JastorException
Control.controlledProperty
public Interaction setControlled_asInteraction() throws JastorException
Control
setControlled_asInteraction
in interface Control
Interaction
, the created valueJastorException
Control.controlledProperty
public Interaction setControlled_asInteraction(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Control
Interaction
with the factory.
and calling setControlled(fr.curie.BiNoM.pathways.biopax.Interaction controlled)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#Interaction. That is, this method
should not be used as a shortcut for creating new objects in the model.setControlled_asInteraction
in interface Control
Interaction
, the newly created valueJastorException
Control.controlledProperty
public Pathway getControlled_asPathway() throws JastorException
Control
getControlled_asPathway
in interface Control
Pathway
JastorException
Control.controlledProperty
public void setControlled(Pathway controlled) throws JastorException
Control
setControlled
in interface Control
JastorException
Control.controlledProperty
public Pathway setControlled_asPathway() throws JastorException
Control
setControlled_asPathway
in interface Control
Pathway
, the created valueJastorException
Control.controlledProperty
public Pathway setControlled_asPathway(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Control
Pathway
with the factory.
and calling setControlled(fr.curie.BiNoM.pathways.biopax.Pathway controlled)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#Pathway. That is, this method
should not be used as a shortcut for creating new objects in the model.setControlled_asPathway
in interface Control
Pathway
, the newly created valueJastorException
Control.controlledProperty
public java.util.Iterator getController_asPhysicalEntity() throws JastorException
Modulation
getController_asPhysicalEntity
in interface Control
getController_asPhysicalEntity
in interface Modulation
Iterator
of PhysicalEntity
JastorException
Control.controllerProperty
public void addController(PhysicalEntity controller) throws JastorException
Modulation
addController
in interface Control
addController
in interface Modulation
JastorException
Control.controllerProperty
public PhysicalEntity addController_asPhysicalEntity() throws JastorException
Modulation
addController_asPhysicalEntity
in interface Control
addController_asPhysicalEntity
in interface Modulation
PhysicalEntity
createdJastorException
Control.controllerProperty
public PhysicalEntity addController_asPhysicalEntity(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Modulation
PhysicalEntity
with the factory
and calling addController(fr.curie.BiNoM.pathways.biopax.PhysicalEntity controller)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#PhysicalEntity. That is, this method
should not be used as a shortcut for creating new objects in the model.addController_asPhysicalEntity
in interface Control
addController_asPhysicalEntity
in interface Modulation
JastorException
Control.controllerProperty
public void removeController(PhysicalEntity controller) throws JastorException
Modulation
removeController
in interface Control
removeController
in interface Modulation
JastorException
Control.controllerProperty
public java.util.Iterator getController_asPathway() throws JastorException
Control
getController_asPathway
in interface Control
Iterator
of Pathway
JastorException
Control.controllerProperty
public void addController(Pathway controller) throws JastorException
Control
addController
in interface Control
JastorException
Control.controllerProperty
public Pathway addController_asPathway() throws JastorException
Control
addController_asPathway
in interface Control
Pathway
createdJastorException
Control.controllerProperty
public Pathway addController_asPathway(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Control
Pathway
with the factory
and calling addController(fr.curie.BiNoM.pathways.biopax.Pathway controller)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#Pathway. That is, this method
should not be used as a shortcut for creating new objects in the model.addController_asPathway
in interface Control
JastorException
Control.controllerProperty
public void removeController(Pathway controller) throws JastorException
Control
removeController
in interface Control
JastorException
Control.controllerProperty
public java.lang.String getControlType() throws JastorException
Control
getControlType
in interface Control
String
JastorException
Control.controlTypeProperty
public void setControlType(java.lang.String controlType) throws JastorException
Control
setControlType
in interface Control
JastorException
Control.controlTypeProperty
public void registerListener(ThingListener listener)
public void unregisterListener(ThingListener listener)
public void addedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)
public void removedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)