public interface Conversion extends Interaction
(URI: http://www.biopax.org/release/biopax-level3.owl#Conversion)
Modifier and Type | Field and Description |
---|---|
static com.hp.hpl.jena.rdf.model.Property |
conversionDirectionProperty
The Jena Property for conversionDirection
|
static com.hp.hpl.jena.rdf.model.Property |
leftProperty
The Jena Property for left
|
static com.hp.hpl.jena.rdf.model.Property |
participantStoichiometryProperty
The Jena Property for participantStoichiometry
|
static com.hp.hpl.jena.rdf.model.Property |
rightProperty
The Jena Property for right
|
static com.hp.hpl.jena.rdf.model.Property |
spontaneousProperty
The Jena Property for spontaneous
|
static Resource |
TYPE
The rdf:type for this ontology class
|
interactionTypeProperty, participantProperty
availabilityProperty, commentProperty, dataSourceProperty, evidenceProperty, nameProperty, xrefProperty
Modifier and Type | Method and Description |
---|---|
PhysicalEntity |
addLeft()
Adds an anonymous value for the 'left' property
|
PhysicalEntity |
addLeft(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'left' property.
|
void |
addLeft(PhysicalEntity left)
Adds a value for the 'left' property
|
PhysicalEntity |
addParticipant_asPhysicalEntity()
Adds an anonymous value for the 'participant' property
|
PhysicalEntity |
addParticipant_asPhysicalEntity(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'participant' property.
|
void |
addParticipant(PhysicalEntity participant)
Adds a value for the 'participant' property
|
Stoichiometry |
addParticipantStoichiometry()
Adds an anonymous value for the 'participantStoichiometry' property
|
Stoichiometry |
addParticipantStoichiometry(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'participantStoichiometry' property.
|
void |
addParticipantStoichiometry(Stoichiometry participantStoichiometry)
Adds a value for the 'participantStoichiometry' property
|
PhysicalEntity |
addRight()
Adds an anonymous value for the 'right' property
|
PhysicalEntity |
addRight(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'right' property.
|
void |
addRight(PhysicalEntity right)
Adds a value for the 'right' property
|
java.lang.String |
getConversionDirection()
Gets the 'conversionDirection' property value
|
java.util.Iterator |
getLeft()
Get an Iterator the 'left' property values.
|
java.util.Iterator |
getParticipant_asPhysicalEntity()
Get an Iterator the 'participant' property values.
|
java.util.Iterator |
getParticipantStoichiometry()
Get an Iterator the 'participantStoichiometry' property values.
|
java.util.Iterator |
getRight()
Get an Iterator the 'right' property values.
|
java.lang.Boolean |
getSpontaneous()
Gets the 'spontaneous' property value
|
void |
removeLeft(PhysicalEntity left)
Removes a value for the 'left' property.
|
void |
removeParticipant(PhysicalEntity participant)
Removes a value for the 'participant' property.
|
void |
removeParticipantStoichiometry(Stoichiometry participantStoichiometry)
Removes a value for the 'participantStoichiometry' property.
|
void |
removeRight(PhysicalEntity right)
Removes a value for the 'right' property.
|
void |
setConversionDirection(java.lang.String conversionDirection)
Sets the 'conversionDirection' property value
|
void |
setSpontaneous(java.lang.Boolean spontaneous)
Sets the 'spontaneous' property value
|
addParticipant, addParticipant, getInteractionType, getParticipant, removeParticipant, setInteractionType, setInteractionType, setInteractionType
addAvailability, addComment, addDataSource, addDataSource, addDataSource, addEvidence, addEvidence, addEvidence, addName, addXref, addXref, addXref, getAvailability, getComment, getDataSource, getEvidence, getName, getXref, removeAvailability, removeComment, removeDataSource, removeEvidence, removeName, removeXref
static final Resource TYPE
static final com.hp.hpl.jena.rdf.model.Property participantStoichiometryProperty
(URI: http://www.biopax.org/release/biopax-level3.owl#participantStoichiometry)
static final com.hp.hpl.jena.rdf.model.Property spontaneousProperty
(URI: http://www.biopax.org/release/biopax-level3.owl#spontaneous)
static final com.hp.hpl.jena.rdf.model.Property leftProperty
(URI: http://www.biopax.org/release/biopax-level3.owl#left)
static final com.hp.hpl.jena.rdf.model.Property conversionDirectionProperty
(URI: http://www.biopax.org/release/biopax-level3.owl#conversionDirection)
static final com.hp.hpl.jena.rdf.model.Property rightProperty
(URI: http://www.biopax.org/release/biopax-level3.owl#right)
java.util.Iterator getParticipant_asPhysicalEntity() throws com.ibm.adtech.jastor.JastorException
Iterator
of PhysicalEntity
com.ibm.adtech.jastor.JastorException
Interaction.participantProperty
void addParticipant(PhysicalEntity participant) throws com.ibm.adtech.jastor.JastorException
addParticipant
in interface Interaction
The
- PhysicalEntity
to addcom.ibm.adtech.jastor.JastorException
Interaction.participantProperty
PhysicalEntity addParticipant_asPhysicalEntity() throws com.ibm.adtech.jastor.JastorException
PhysicalEntity
createdcom.ibm.adtech.jastor.JastorException
Interaction.participantProperty
PhysicalEntity addParticipant_asPhysicalEntity(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
PhysicalEntity
with the factory
and calling addParticipant(fr.curie.BiNoM.pathways.biopax.PhysicalEntity participant)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#PhysicalEntity. That is, this method
should not be used as a shortcut for creating new objects in the model.The
- om.hp.hpl.jena.rdf.model.Resource
to addcom.ibm.adtech.jastor.JastorException
Interaction.participantProperty
void removeParticipant(PhysicalEntity participant) throws com.ibm.adtech.jastor.JastorException
The
- PhysicalEntity
to removecom.ibm.adtech.jastor.JastorException
Interaction.participantProperty
java.util.Iterator getParticipantStoichiometry() throws com.ibm.adtech.jastor.JastorException
Iterator
of Stoichiometry
com.ibm.adtech.jastor.JastorException
participantStoichiometryProperty
void addParticipantStoichiometry(Stoichiometry participantStoichiometry) throws com.ibm.adtech.jastor.JastorException
The
- Stoichiometry
to addcom.ibm.adtech.jastor.JastorException
participantStoichiometryProperty
Stoichiometry addParticipantStoichiometry() throws com.ibm.adtech.jastor.JastorException
Stoichiometry
createdcom.ibm.adtech.jastor.JastorException
participantStoichiometryProperty
Stoichiometry addParticipantStoichiometry(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
Stoichiometry
with the factory
and calling addParticipantStoichiometry(fr.curie.BiNoM.pathways.biopax.Stoichiometry participantStoichiometry)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#Stoichiometry. That is, this method
should not be used as a shortcut for creating new objects in the model.The
- om.hp.hpl.jena.rdf.model.Resource
to addcom.ibm.adtech.jastor.JastorException
participantStoichiometryProperty
void removeParticipantStoichiometry(Stoichiometry participantStoichiometry) throws com.ibm.adtech.jastor.JastorException
The
- Stoichiometry
to removecom.ibm.adtech.jastor.JastorException
participantStoichiometryProperty
java.lang.Boolean getSpontaneous() throws com.ibm.adtech.jastor.JastorException
Boolean
com.ibm.adtech.jastor.JastorException
spontaneousProperty
void setSpontaneous(java.lang.Boolean spontaneous) throws com.ibm.adtech.jastor.JastorException
{@link
- java.lang.Boolean}com.ibm.adtech.jastor.JastorException
spontaneousProperty
java.util.Iterator getLeft() throws com.ibm.adtech.jastor.JastorException
Iterator
of PhysicalEntity
com.ibm.adtech.jastor.JastorException
leftProperty
void addLeft(PhysicalEntity left) throws com.ibm.adtech.jastor.JastorException
The
- PhysicalEntity
to addcom.ibm.adtech.jastor.JastorException
leftProperty
PhysicalEntity addLeft() throws com.ibm.adtech.jastor.JastorException
PhysicalEntity
createdcom.ibm.adtech.jastor.JastorException
leftProperty
PhysicalEntity addLeft(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
PhysicalEntity
with the factory
and calling addLeft(fr.curie.BiNoM.pathways.biopax.PhysicalEntity left)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#PhysicalEntity. That is, this method
should not be used as a shortcut for creating new objects in the model.The
- om.hp.hpl.jena.rdf.model.Resource
to addcom.ibm.adtech.jastor.JastorException
leftProperty
void removeLeft(PhysicalEntity left) throws com.ibm.adtech.jastor.JastorException
The
- PhysicalEntity
to removecom.ibm.adtech.jastor.JastorException
leftProperty
java.lang.String getConversionDirection() throws com.ibm.adtech.jastor.JastorException
String
com.ibm.adtech.jastor.JastorException
conversionDirectionProperty
void setConversionDirection(java.lang.String conversionDirection) throws com.ibm.adtech.jastor.JastorException
{@link
- java.lang.String}com.ibm.adtech.jastor.JastorException
conversionDirectionProperty
java.util.Iterator getRight() throws com.ibm.adtech.jastor.JastorException
Iterator
of PhysicalEntity
com.ibm.adtech.jastor.JastorException
rightProperty
void addRight(PhysicalEntity right) throws com.ibm.adtech.jastor.JastorException
The
- PhysicalEntity
to addcom.ibm.adtech.jastor.JastorException
rightProperty
PhysicalEntity addRight() throws com.ibm.adtech.jastor.JastorException
PhysicalEntity
createdcom.ibm.adtech.jastor.JastorException
rightProperty
PhysicalEntity addRight(com.hp.hpl.jena.rdf.model.Resource resource) throws com.ibm.adtech.jastor.JastorException
PhysicalEntity
with the factory
and calling addRight(fr.curie.BiNoM.pathways.biopax.PhysicalEntity right)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#PhysicalEntity. That is, this method
should not be used as a shortcut for creating new objects in the model.The
- om.hp.hpl.jena.rdf.model.Resource
to addcom.ibm.adtech.jastor.JastorException
rightProperty
void removeRight(PhysicalEntity right) throws com.ibm.adtech.jastor.JastorException
The
- PhysicalEntity
to removecom.ibm.adtech.jastor.JastorException
rightProperty