Modifier and Type | Method and Description |
---|---|
void |
addAvailability(java.lang.String availability)
Add a 'availability' property value
|
void |
addComment(java.lang.String comment)
Add a 'comment' property value
|
Provenance |
addDataSource()
Adds an anonymous value for the 'dataSource' property
|
Provenance |
addDataSource(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'dataSource' property
|
void |
addDataSource(Provenance dataSource)
Adds a value for the 'dataSource' property
|
void |
addedStatement(com.hp.hpl.jena.rdf.model.Statement stmt) |
Evidence |
addEvidence()
Adds an anonymous value for the 'evidence' property
|
Evidence |
addEvidence(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'evidence' property
|
void |
addEvidence(Evidence evidence)
Adds a value for the 'evidence' property
|
void |
addName(java.lang.String name)
Add a 'name' property value
|
Interaction |
addPathwayComponent_asInteraction()
Adds an anonymous value for the 'pathwayComponent' property
|
Interaction |
addPathwayComponent_asInteraction(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'pathwayComponent' property.
|
Pathway |
addPathwayComponent_asPathway()
Adds an anonymous value for the 'pathwayComponent' property
|
Pathway |
addPathwayComponent_asPathway(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'pathwayComponent' property.
|
void |
addPathwayComponent(Interaction pathwayComponent)
Adds a value for the 'pathwayComponent' property
|
void |
addPathwayComponent(Pathway pathwayComponent)
Adds a value for the 'pathwayComponent' property
|
PathwayStep |
addPathwayOrder()
Adds an anonymous value for the 'pathwayOrder' property
|
PathwayStep |
addPathwayOrder(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'pathwayOrder' property
|
void |
addPathwayOrder(PathwayStep pathwayOrder)
Adds a value for the 'pathwayOrder' property
|
Xref |
addXref()
Adds an anonymous value for the 'xref' property
|
Xref |
addXref(com.hp.hpl.jena.rdf.model.Resource resource)
Adds a value for the 'xref' property
|
void |
addXref(Xref xref)
Adds a value for the 'xref' property
|
void |
clearCache() |
java.util.Iterator |
getAvailability()
Iterates through the 'availability' property values.
|
java.util.Iterator |
getComment()
Iterates through the 'comment' property values.
|
java.util.Iterator |
getDataSource()
Get an Iterator the 'dataSource' property values.
|
java.util.Iterator |
getEvidence()
Get an Iterator the 'evidence' property values.
|
java.util.Iterator |
getName()
Iterates through the 'name' property values.
|
BioSource |
getOrganism()
Gets the 'organism' property value
|
java.util.Iterator |
getPathwayComponent_asInteraction()
Get an Iterator the 'pathwayComponent' property values.
|
java.util.Iterator |
getPathwayComponent_asPathway()
Get an Iterator the 'pathwayComponent' property values.
|
java.util.Iterator |
getPathwayOrder()
Get an Iterator the 'pathwayOrder' property values.
|
java.util.Iterator |
getXref()
Get an Iterator the 'xref' property values.
|
java.util.List |
listStatements() |
void |
registerListener(ThingListener listener) |
void |
removeAvailability(java.lang.String availability)
Remove a 'availability' property value.
|
void |
removeComment(java.lang.String comment)
Remove a 'comment' property value.
|
void |
removeDataSource(Provenance dataSource)
Removes a value for the 'dataSource' property.
|
void |
removedStatement(com.hp.hpl.jena.rdf.model.Statement stmt) |
void |
removeEvidence(Evidence evidence)
Removes a value for the 'evidence' property.
|
void |
removeName(java.lang.String name)
Remove a 'name' property value.
|
void |
removePathwayComponent(Interaction pathwayComponent)
Removes a value for the 'pathwayComponent' property.
|
void |
removePathwayComponent(Pathway pathwayComponent)
Removes a value for the 'pathwayComponent' property.
|
void |
removePathwayOrder(PathwayStep pathwayOrder)
Removes a value for the 'pathwayOrder' property.
|
void |
removeXref(Xref xref)
Removes a value for the 'xref' property.
|
BioSource |
setOrganism()
Sets the 'organism' property value to an anonymous node
|
void |
setOrganism(BioSource organism)
Sets the 'organism' property value
|
BioSource |
setOrganism(com.hp.hpl.jena.rdf.model.Resource resource)
Sets the 'organism' property value
|
void |
unregisterListener(ThingListener listener) |
public java.util.List listStatements()
public void clearCache()
public java.util.Iterator getDataSource() throws JastorException
Entity
getDataSource
in interface Entity
Iterator
of Provenance
JastorException
Entity.dataSourceProperty
public void addDataSource(Provenance dataSource) throws JastorException
Entity
addDataSource
in interface Entity
JastorException
Entity.dataSourceProperty
public Provenance addDataSource() throws JastorException
Entity
addDataSource
in interface Entity
Provenance
createdJastorException
Entity.dataSourceProperty
public Provenance addDataSource(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Entity
addDataSource
in interface Entity
JastorException
Entity.dataSourceProperty
public void removeDataSource(Provenance dataSource) throws JastorException
Entity
removeDataSource
in interface Entity
JastorException
Entity.dataSourceProperty
public java.util.Iterator getAvailability() throws JastorException
Entity
getAvailability
in interface Entity
Iterator
of String
JastorException
Entity.availabilityProperty
public void addAvailability(java.lang.String availability) throws JastorException
Entity
addAvailability
in interface Entity
JastorException
Entity.availabilityProperty
public void removeAvailability(java.lang.String availability) throws JastorException
Entity
removeAvailability
in interface Entity
JastorException
Entity.availabilityProperty
public java.util.Iterator getComment() throws JastorException
Entity
getComment
in interface Entity
Iterator
of String
JastorException
Entity.commentProperty
public void addComment(java.lang.String comment) throws JastorException
Entity
addComment
in interface Entity
JastorException
Entity.commentProperty
public void removeComment(java.lang.String comment) throws JastorException
Entity
removeComment
in interface Entity
JastorException
Entity.commentProperty
public java.util.Iterator getName() throws JastorException
Entity
getName
in interface Entity
Iterator
of String
JastorException
Entity.nameProperty
public void addName(java.lang.String name) throws JastorException
Entity
addName
in interface Entity
JastorException
Entity.nameProperty
public void removeName(java.lang.String name) throws JastorException
Entity
removeName
in interface Entity
JastorException
Entity.nameProperty
public java.util.Iterator getEvidence() throws JastorException
Entity
getEvidence
in interface Entity
Iterator
of Evidence
JastorException
Entity.evidenceProperty
public void addEvidence(Evidence evidence) throws JastorException
Entity
addEvidence
in interface Entity
JastorException
Entity.evidenceProperty
public Evidence addEvidence() throws JastorException
Entity
addEvidence
in interface Entity
Evidence
createdJastorException
Entity.evidenceProperty
public Evidence addEvidence(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Entity
addEvidence
in interface Entity
JastorException
Entity.evidenceProperty
public void removeEvidence(Evidence evidence) throws JastorException
Entity
removeEvidence
in interface Entity
JastorException
Entity.evidenceProperty
public java.util.Iterator getXref() throws JastorException
Entity
getXref
in interface Entity
Iterator
of Xref
JastorException
Entity.xrefProperty
public void addXref(Xref xref) throws JastorException
Entity
addXref
in interface Entity
JastorException
Entity.xrefProperty
public Xref addXref() throws JastorException
Entity
addXref
in interface Entity
Xref
createdJastorException
Entity.xrefProperty
public Xref addXref(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Entity
addXref
in interface Entity
JastorException
Entity.xrefProperty
public void removeXref(Xref xref) throws JastorException
Entity
removeXref
in interface Entity
JastorException
Entity.xrefProperty
public java.util.Iterator getPathwayOrder() throws JastorException
Pathway
getPathwayOrder
in interface Pathway
Iterator
of PathwayStep
JastorException
Pathway.pathwayOrderProperty
public void addPathwayOrder(PathwayStep pathwayOrder) throws JastorException
Pathway
addPathwayOrder
in interface Pathway
JastorException
Pathway.pathwayOrderProperty
public PathwayStep addPathwayOrder() throws JastorException
Pathway
addPathwayOrder
in interface Pathway
PathwayStep
createdJastorException
Pathway.pathwayOrderProperty
public PathwayStep addPathwayOrder(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Pathway
addPathwayOrder
in interface Pathway
JastorException
Pathway.pathwayOrderProperty
public void removePathwayOrder(PathwayStep pathwayOrder) throws JastorException
Pathway
removePathwayOrder
in interface Pathway
JastorException
Pathway.pathwayOrderProperty
public java.util.Iterator getPathwayComponent_asInteraction() throws JastorException
Pathway
getPathwayComponent_asInteraction
in interface Pathway
Iterator
of Interaction
JastorException
Pathway.pathwayComponentProperty
public void addPathwayComponent(Interaction pathwayComponent) throws JastorException
Pathway
addPathwayComponent
in interface Pathway
JastorException
Pathway.pathwayComponentProperty
public Interaction addPathwayComponent_asInteraction() throws JastorException
Pathway
addPathwayComponent_asInteraction
in interface Pathway
Interaction
createdJastorException
Pathway.pathwayComponentProperty
public Interaction addPathwayComponent_asInteraction(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Pathway
Interaction
with the factory
and calling addPathwayComponent(fr.curie.BiNoM.pathways.biopax.Interaction pathwayComponent)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#Interaction. That is, this method
should not be used as a shortcut for creating new objects in the model.addPathwayComponent_asInteraction
in interface Pathway
JastorException
Pathway.pathwayComponentProperty
public void removePathwayComponent(Interaction pathwayComponent) throws JastorException
Pathway
removePathwayComponent
in interface Pathway
JastorException
Pathway.pathwayComponentProperty
public java.util.Iterator getPathwayComponent_asPathway() throws JastorException
Pathway
getPathwayComponent_asPathway
in interface Pathway
Iterator
of Pathway
JastorException
Pathway.pathwayComponentProperty
public void addPathwayComponent(Pathway pathwayComponent) throws JastorException
Pathway
addPathwayComponent
in interface Pathway
JastorException
Pathway.pathwayComponentProperty
public Pathway addPathwayComponent_asPathway() throws JastorException
Pathway
addPathwayComponent_asPathway
in interface Pathway
Pathway
createdJastorException
Pathway.pathwayComponentProperty
public Pathway addPathwayComponent_asPathway(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Pathway
Pathway
with the factory
and calling addPathwayComponent(fr.curie.BiNoM.pathways.biopax.Pathway pathwayComponent)
The resource argument have rdf:type http://www.biopax.org/release/biopax-level3.owl#Pathway. That is, this method
should not be used as a shortcut for creating new objects in the model.addPathwayComponent_asPathway
in interface Pathway
JastorException
Pathway.pathwayComponentProperty
public void removePathwayComponent(Pathway pathwayComponent) throws JastorException
Pathway
removePathwayComponent
in interface Pathway
JastorException
Pathway.pathwayComponentProperty
public BioSource getOrganism() throws JastorException
Pathway
getOrganism
in interface Pathway
BioSource
JastorException
Pathway.organismProperty
public void setOrganism(BioSource organism) throws JastorException
Pathway
setOrganism
in interface Pathway
JastorException
Pathway.organismProperty
public BioSource setOrganism() throws JastorException
Pathway
setOrganism
in interface Pathway
BioSource
, the created valueJastorException
Pathway.organismProperty
public BioSource setOrganism(com.hp.hpl.jena.rdf.model.Resource resource) throws JastorException
Pathway
setOrganism
in interface Pathway
JastorException
Pathway.organismProperty
public void registerListener(ThingListener listener)
public void unregisterListener(ThingListener listener)
public void addedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)
public void removedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)