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Package Hierarchies:
fr.curie.BiNoM.analysis
,
fr.curie.BiNoM.biopax
,
fr.curie.BiNoM.biopax.propedit
,
fr.curie.BiNoM.celldesigner.analysis
,
fr.curie.BiNoM.celldesigner.biopax
,
fr.curie.BiNoM.celldesigner.biopax.propedit
,
fr.curie.BiNoM.celldesigner.lib
,
fr.curie.BiNoM.celldesigner.plugin
,
fr.curie.BiNoM.celldesigner.plugin2
,
fr.curie.BiNoM.celldesigner.sample
,
fr.curie.BiNoM.cytoscape.ain
,
fr.curie.BiNoM.cytoscape.analysis
,
fr.curie.BiNoM.cytoscape.biopax
,
fr.curie.BiNoM.cytoscape.biopax.propedit
,
fr.curie.BiNoM.cytoscape.biopax.query
,
fr.curie.BiNoM.cytoscape.celldesigner
,
fr.curie.BiNoM.cytoscape.influence
,
fr.curie.BiNoM.cytoscape.lib
,
fr.curie.BiNoM.cytoscape.nestmanager
,
fr.curie.BiNoM.cytoscape.netwop
,
fr.curie.BiNoM.cytoscape.plugin
,
fr.curie.BiNoM.cytoscape.sbml
,
fr.curie.BiNoM.cytoscape.utils
,
fr.curie.BiNoM.lib
,
fr.curie.BiNoM.pathways
,
fr.curie.BiNoM.pathways.analysis.structure
,
fr.curie.BiNoM.pathways.biopax
,
fr.curie.BiNoM.pathways.coloring
,
fr.curie.BiNoM.pathways.converters
,
fr.curie.BiNoM.pathways.navicell
,
fr.curie.BiNoM.pathways.test
,
fr.curie.BiNoM.pathways.test.examples
,
fr.curie.BiNoM.pathways.utils
,
fr.curie.BiNoM.pathways.utils.acsn
,
fr.curie.BiNoM.pathways.wrappers
Class Hierarchy
java.lang.Object
fr.curie.BiNoM.cytoscape.utils.
AboutBox
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.pathways.utils.
AccessionNumberTable
fr.curie.BiNoM.pathways.utils.acsn.
ACSNProcedures
fr.curie.BiNoM.pathways.test.
AgilentCGHMapping
fr.curie.BiNoM.pathways.utils.
analyseInstallSpyLog
fr.curie.BiNoM.pathways.test.
analyzeSBMLFile
fr.curie.BiNoM.pathways.analysis.structure.
Attribute
fr.curie.BiNoM.pathways.wrappers.
BioPAX
fr.curie.BiNoM.pathways.converters.
BioPAX2CellDesigner
fr.curie.BiNoM.pathways.converters.
BioPAX2SBML
fr.curie.BiNoM.pathways.converters.
BioPAX2Cytoscape
fr.curie.BiNoM.cytoscape.biopax.
BioPAXAssociateSource
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.biopax.
BioPAXAssociateSourceTask
fr.curie.BiNoM.biopax.propedit.
BioPAXAttrDesc
fr.curie.BiNoM.biopax.propedit.
BioPAXDoubleAttrDesc
fr.curie.BiNoM.biopax.propedit.
BioPAXDoubleListAttrDesc
fr.curie.BiNoM.biopax.propedit.
BioPAXIntegerAttrDesc
fr.curie.BiNoM.biopax.propedit.
BioPAXIntegerListAttrDesc
fr.curie.BiNoM.biopax.propedit.
BioPAXObjectAttrDesc
fr.curie.BiNoM.biopax.propedit.
BioPAXObjectListAttrDesc
fr.curie.BiNoM.biopax.propedit.
BioPAXStringAttrDesc
fr.curie.BiNoM.biopax.propedit.
BioPAXStringListAttrDesc
fr.curie.BiNoM.biopax.propedit.
BioPAXAttrDescProto
fr.curie.BiNoM.biopax.propedit.
BioPAXAttrDescProtoFactory
fr.curie.BiNoM.biopax.propedit.
BioPAXClassDesc
fr.curie.BiNoM.biopax.propedit.
BioPAXClassDesc.HierarchyScanner
fr.curie.BiNoM.biopax.propedit.
BioPAXClassDescFactory
fr.curie.BiNoM.pathways.test.
BioPAXConnectedComponents
fr.curie.BiNoM.pathways.test.examples.
BioPAXConnectedComponents
fr.curie.BiNoM.cytoscape.biopax.query.
BioPAXDisplayIndexInfo
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.biopax.
BioPAXExportTask
fr.curie.BiNoM.cytoscape.biopax.
BioPAXExportToFile
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.biopax.query.
BioPAXGenerateIndex
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.biopax.query.
BioPAXGenerateIndexTask
fr.curie.BiNoM.pathways.utils.
BioPAXGraphMapper
fr.curie.BiNoM.pathways.utils.
BioPAXGraphMappingService
fr.curie.BiNoM.pathways.utils.
BioPAXGraphQuery
fr.curie.BiNoM.pathways.utils.
BioPAXGraphQueryEngine
fr.curie.BiNoM.biopax.
BioPAXImportBaseTask
fr.curie.BiNoM.celldesigner.biopax.
BioPAXImportTask
(implements fr.curie.BiNoM.lib.
AbstractTask
)
fr.curie.BiNoM.cytoscape.biopax.
BioPAXImportTask
(implements fr.curie.BiNoM.lib.
AbstractTask
)
fr.curie.BiNoM.cytoscape.biopax.
BioPAXImportFromFile
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.biopax.
BioPAXImportFromURL
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.celldesigner.biopax.
BioPAXImportTaskFactory
(implements fr.curie.BiNoM.biopax.
AbstractBioPAXImportTaskFactory
)
fr.curie.BiNoM.cytoscape.biopax.
BioPAXImportTaskFactory
(implements fr.curie.BiNoM.biopax.
AbstractBioPAXImportTaskFactory
)
fr.curie.BiNoM.pathways.converters.
BioPAXIndex2Tables
fr.curie.BiNoM.cytoscape.biopax.query.
BioPAXIndexPathAnalysis
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.biopax.query.
BioPAXLoadIndex
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.biopax.query.
BioPAXLoadIndexTask
fr.curie.BiNoM.pathways.utils.
BioPAXMerge
fr.curie.BiNoM.pathways.utils.
BioPAXNamingService
fr.curie.BiNoM.biopax.propedit.
BioPAXNamingServiceManager
fr.curie.BiNoM.biopax.propedit.
BioPAXObject
fr.curie.BiNoM.biopax.propedit.
BioPAXObjectFactory
fr.curie.BiNoM.pathways.test.examples.
BioPAXPathAnalysis
fr.curie.BiNoM.cytoscape.biopax.propedit.
BioPAXPropertyManager
fr.curie.BiNoM.cytoscape.biopax.propedit.
BioPAXClassTree
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.biopax.propedit.
BioPAXPropertyBrowser
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.biopax.propedit.
BioPAXPropertyUtils
fr.curie.BiNoM.cytoscape.biopax.query.
BioPAXRepository
fr.curie.BiNoM.cytoscape.biopax.query.
BioPAXDBRepository
fr.curie.BiNoM.cytoscape.biopax.query.
BioPAXIndexRepository
fr.curie.BiNoM.cytoscape.biopax.
BioPAXSaveAssociated
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.biopax.query.
BioPAXSelectEntities
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.biopax.query.
BioPAXSelectEntitiesTask
fr.curie.BiNoM.biopax.
BioPAXSourceDB
fr.curie.BiNoM.cytoscape.biopax.query.
BioPAXStandardQuery
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.pathways.test.examples.
BioPAXStandardQuery
fr.curie.BiNoM.cytoscape.biopax.query.
BioPAXStandardQueryTask
fr.curie.BiNoM.cytoscape.biopax.query.
BioPAXStandardQueryTask.StandardQueryOptions
fr.curie.BiNoM.cytoscape.biopax.
BioPAXSyncNetworks
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.pathways.
BioPAXToCytoscapeConverter.Graph
fr.curie.BiNoM.pathways.
BioPAXToCytoscapeConverter.Option
fr.curie.BiNoM.biopax.propedit.
BioPAXToggleNamingService
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.pathways.
BioPAXToSBMLConverter
fr.curie.BiNoM.pathways.
BioPAXToCellDesignerConverter
fr.curie.BiNoM.pathways.
BioPAXToCytoscapeConverter
fr.curie.BiNoM.pathways.
parseBioPAX
fr.curie.BiNoM.pathways.
BioPAXToSBMLConverter.BioPAXSpecies
fr.curie.BiNoM.pathways.utils.
BioPAXUtilities
fr.curie.BiNoM.cytoscape.biopax.query.
BioPAXViewQueryLog
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.pathways.navicell.
BlogCreator
fr.curie.BiNoM.pathways.navicell.
WordPressBlogCreator
fr.curie.BiNoM.cytoscape.analysis.
CalcCentrality
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.analysis.
CalcCentralityTask
fr.curie.BiNoM.pathways.test.examples.
CDesigner2BioPAX
fr.curie.BiNoM.pathways.wrappers.
CellDesigner
fr.curie.BiNoM.pathways.converters.
CellDesigner2BioPAX
fr.curie.BiNoM.pathways.converters.
CellDesigner2Cytoscape
fr.curie.BiNoM.cytoscape.celldesigner.
CellDesignerAssociateSource
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.celldesigner.
CellDesignerAssociateSourceTask
fr.curie.BiNoM.pathways.
CellDesignerColorProteins
fr.curie.BiNoM.pathways.
CellDesignerColorSpecies
fr.curie.BiNoM.cytoscape.celldesigner.
CellDesignerExportTask
fr.curie.BiNoM.cytoscape.celldesigner.
CellDesignerExportToFile
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.celldesigner.
CellDesignerExportToFileDialog.CellDesignerExportToFileOptions
fr.curie.BiNoM.pathways.utils.
CellDesignerGenerator
fr.curie.BiNoM.cytoscape.celldesigner.
CellDesignerImportFromFile
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.celldesigner.
CellDesignerImportTask
fr.curie.BiNoM.pathways.coloring.
CellDesignerPathwayStaining
fr.curie.BiNoM.pathways.coloring.
CellDesignerPathwayStaining.ColorPoint
CellDesignerPlugin
fr.curie.BiNoM.celldesigner.plugin.
BiNoMPlugin
jp.sbi.celldesigner.plugin.CellDesignerPlugin
fr.curie.BiNoM.celldesigner.plugin2.
Plugin
CellDesignerPlugin
fr.curie.BiNoM.celldesigner.sample.
SamplePlugin
fr.curie.BiNoM.cytoscape.celldesigner.
CellDesignerSourceDB
fr.curie.BiNoM.pathways.
CellDesignerToBioPAXConverter
fr.curie.BiNoM.pathways.
CellDesignerToCytoscapeConverter
fr.curie.BiNoM.pathways.
CellDesignerToCytoscapeConverter.Graph
fr.curie.BiNoM.cytoscape.celldesigner.
checkCellDesignerFile
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.pathways.utils.
CheckCellDesignerFile
fr.curie.BiNoM.cytoscape.celldesigner.
checkCellDesignerFileTask
fr.curie.BiNoM.cytoscape.nestmanager.
ClusterByShortPathTask
fr.curie.BiNoM.cytoscape.analysis.
ClusterNetworks
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.celldesigner.analysis.
ClusterNetworksTask
(implements fr.curie.BiNoM.lib.
AbstractTask
)
fr.curie.BiNoM.cytoscape.analysis.
ClusterNetworksTask
(implements fr.curie.BiNoM.lib.
AbstractTask
)
fr.curie.BiNoM.celldesigner.analysis.
ClusterNetworksTaskFactory
(implements fr.curie.BiNoM.analysis.
AbstractClusterNetworksTaskFactory
)
fr.curie.BiNoM.cytoscape.analysis.
ClusterNetworksTaskFactory
(implements fr.curie.BiNoM.analysis.
AbstractClusterNetworksTaskFactory
)
fr.curie.BiNoM.cytoscape.celldesigner.
colorCellDesignerProteins
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.celldesigner.
colorCellDesignerProteinsTask
fr.curie.BiNoM.pathways.utils.
CombinationGenerator
java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
java.awt.Container
javax.swing.JComponent (implements java.io.Serializable)
javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
fr.curie.BiNoM.biopax.propedit.
BioPAXPropertyUtils.ObjectLabel
javax.swing.JPanel (implements javax.accessibility.Accessible)
fr.curie.BiNoM.lib.
MLLabel
javax.swing.JScrollPane (implements javax.accessibility.Accessible, javax.swing.ScrollPaneConstants)
fr.curie.BiNoM.biopax.propedit.
BioPAXPropertyBrowserPanel
(implements java.awt.event.MouseListener)
java.awt.Window (implements javax.accessibility.Accessible)
java.awt.Dialog
javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
fr.curie.BiNoM.celldesigner.plugin.
BiNoMPluginDialog
fr.curie.BiNoM.biopax.
BioPAXImportDialog
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.biopax.propedit.
BioPAXPropertyEditFrame
fr.curie.BiNoM.cytoscape.biopax.
BioPAXSyncNetworksDialog
fr.curie.BiNoM.analysis.
ClusterNetworksDialog
fr.curie.BiNoM.cytoscape.utils.
ComboBoxes
(implements java.awt.event.ActionListener, java.awt.event.ItemListener)
fr.curie.BiNoM.cytoscape.analysis.
createNeighborhoodSetsDialog
fr.curie.BiNoM.cytoscape.netwop.
DoubleNetworkDifferenceDialog
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.analysis.
EdgesFromOtherNetworkDialog
fr.curie.BiNoM.analysis.
ExcludeIntermediateNodesDialog
fr.curie.BiNoM.cytoscape.analysis.
ExtractSubnetworkDialog
fr.curie.BiNoM.cytoscape.utils.
GridBagDialog
fr.curie.BiNoM.cytoscape.utils.
ListDialog
(implements java.awt.event.ActionListener, javax.swing.event.ListSelectionListener)
fr.curie.BiNoM.cytoscape.utils.
TextBox
(implements java.awt.event.ActionListener, java.awt.datatransfer.ClipboardOwner)
fr.curie.BiNoM.cytoscape.utils.
TextBoxDialog
(implements java.awt.event.ActionListener, java.awt.datatransfer.ClipboardOwner)
fr.curie.BiNoM.cytoscape.utils.
TwoListDialog
(implements java.awt.event.ActionListener, javax.swing.event.ListSelectionListener)
fr.curie.BiNoM.cytoscape.ain.
ImportFromAINDialogConstitutiveReactions
fr.curie.BiNoM.cytoscape.ain.
ImportFromAINDialogFamily
fr.curie.BiNoM.cytoscape.analysis.
IndexPathAnalysisDialog
fr.curie.BiNoM.cytoscape.utils.
ListAllNodesDialog
fr.curie.BiNoM.cytoscape.utils.
ListAllReactionsDialog
fr.curie.BiNoM.cytoscape.celldesigner.
MergingMapsDialog
fr.curie.BiNoM.analysis.
ModularViewDialog
fr.curie.BiNoM.cytoscape.netwop.
NetworksUpdateConfirmDialog
fr.curie.BiNoM.cytoscape.netwop.
NetworksUpdateDialog
fr.curie.BiNoM.cytoscape.analysis.
OptimalCutSetAnalyzerDialog
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.analysis.
OptimalCutSetGenesDialog
fr.curie.BiNoM.cytoscape.analysis.
OptimalCutSetReportDialog
fr.curie.BiNoM.cytoscape.analysis.
OptimalCutSetVisuDialog
fr.curie.BiNoM.cytoscape.utils.
PasteNodesAndEdgesDialog
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.analysis.
PathAnalysisDialog
fr.curie.BiNoM.cytoscape.analysis.
PathConsistencyAnalyzerBootstrapDialog
fr.curie.BiNoM.cytoscape.analysis.
PathConsistencyAnalyzerDialog
fr.curie.BiNoM.cytoscape.analysis.
PathConsistencyAnalyzerPathDialog
fr.curie.BiNoM.cytoscape.analysis.
PathConsistencyAnalyzerReportDialog
fr.curie.BiNoM.celldesigner.sample.
SamplePluginDialog
fr.curie.BiNoM.cytoscape.utils.
SelectNodesByAttributeSubstringDialog
fr.curie.BiNoM.cytoscape.utils.
ShowClipboardContentsDialog
fr.curie.BiNoM.cytoscape.utils.
ShowTextDialog
java.awt.Frame (implements java.awt.MenuContainer)
javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
fr.curie.BiNoM.biopax.propedit.
BioPAXClassTreeFrame
(implements java.awt.event.MouseListener, javax.swing.event.TreeSelectionListener)
fr.curie.BiNoM.cytoscape.biopax.query.
BioPAXDisplayIndexInfoDialog
fr.curie.BiNoM.cytoscape.biopax.query.
BioPAXGenerateIndexDialog
fr.curie.BiNoM.cytoscape.biopax.query.
BioPAXLoadIndexDialog
fr.curie.BiNoM.biopax.propedit.
BioPAXPropertyBrowserFrame
fr.curie.BiNoM.cytoscape.biopax.query.
BioPAXSelectEntitiesDialog
fr.curie.BiNoM.cytoscape.biopax.query.
BioPAXStandardQueryDialog
fr.curie.BiNoM.cytoscape.biopax.query.
BioPAXViewQueryLogDialog
fr.curie.BiNoM.cytoscape.celldesigner.
CellDesignerExportToFileDialog
fr.curie.BiNoM.cytoscape.celldesigner.
checkCellDesignerFileDialog
fr.curie.BiNoM.cytoscape.celldesigner.
colorCellDesignerProteinsDialog
fr.curie.BiNoM.cytoscape.celldesigner.
extractCellDesignerNotesDialog
fr.curie.BiNoM.cytoscape.celldesigner.
modifyCellDesignerNotesDialog
fr.curie.BiNoM.cytoscape.celldesigner.
pathwayStainingCellDesignerDialog
fr.curie.BiNoM.cytoscape.utils.
PavingDialog
fr.curie.BiNoM.cytoscape.celldesigner.
ProduceNaviCellMapFilesDialog
fr.curie.BiNoM.pathways.utils.
ComputeNaviCellMaps
fr.curie.BiNoM.cytoscape.utils.
ComputingByBFS
fr.curie.BiNoM.cytoscape.analysis.
ConnectedComponents
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.celldesigner.analysis.
ConnectedComponentsTask
(implements fr.curie.BiNoM.lib.
AbstractTask
)
fr.curie.BiNoM.cytoscape.analysis.
ConnectedComponentsTask
fr.curie.BiNoM.pathways.utils.acsn.
ConnectionToDatabases
fr.curie.BiNoM.cytoscape.analysis.
ConvertReactionNetworkToEntityNetwork
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.analysis.
ConvertReactionNetworkToEntityNetworkTask
fr.curie.BiNoM.cytoscape.analysis.
ConvertToUndirectedGraph
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.analysis.
ConvertToUndirectedGraphTask
fr.curie.BiNoM.cytoscape.utils.
CopySelectedNodesAndEdges
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.analysis.
createNeighborhoodSets
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.utils.
CreateSetIntersectionGraph
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.pathways.wrappers.
CSML
fr.curie.BiNoM.cytoscape.celldesigner.
CSMLImportFromFile
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.celldesigner.
CSMLImportTask
fr.curie.BiNoM.pathways.
CSMLToCytoscapeConverter
fr.curie.BiNoM.cytoscape.analysis.
CycleDecomposition
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.celldesigner.analysis.
CycleDecompositionTask
(implements fr.curie.BiNoM.lib.
AbstractTask
)
fr.curie.BiNoM.cytoscape.analysis.
CycleDecompositionTask
fr.curie.BiNoM.pathways.converters.
Cytoscape2BioPAX
fr.curie.BiNoM.pathways.converters.
Cytoscape2CellDesigner
fr.curie.BiNoM.pathways.converters.
Cytoscape2SBML
CytoscapeAction
fr.curie.BiNoM.cytoscape.influence.
UpdateInfluenceAttrib
CytoscapeAction
fr.curie.BiNoM.cytoscape.influence.
FromToNodes
fr.curie.BiNoM.cytoscape.influence.
InfluenceAreaInArray
fr.curie.BiNoM.cytoscape.influence.
InfluenceAreaInAttribute
fr.curie.BiNoM.cytoscape.influence.
InfluenceArrayAsGraphic
fr.curie.BiNoM.cytoscape.influence.
InfluenceArrayAsText
fr.curie.BiNoM.cytoscape.influence.
InfluenceByAttribute
fr.curie.BiNoM.cytoscape.influence.
InfluenceFeatures
fr.curie.BiNoM.cytoscape.influence.
InputReachParameter
CytoscapeAction
fr.curie.BiNoM.cytoscape.nestmanager.
RecreateLostConnectionsInsideNests
CytoscapeAction
fr.curie.BiNoM.cytoscape.nestmanager.
PackInNestNode
CytoscapeAction
fr.curie.BiNoM.cytoscape.nestmanager.
NestInNodeAttribute
CytoscapeAction
fr.curie.BiNoM.cytoscape.nestmanager.
MergeSelectedNests
CytoscapeAction
fr.curie.BiNoM.cytoscape.nestmanager.
ListNodesByNest
CytoscapeAction
fr.curie.BiNoM.cytoscape.nestmanager.
ListComponents
CytoscapeAction
fr.curie.BiNoM.cytoscape.nestmanager.
InterOf2SelectedNests
CytoscapeAction
fr.curie.BiNoM.cytoscape.nestmanager.
FindCommonNodes
CytoscapeAction
fr.curie.BiNoM.cytoscape.nestmanager.
DestroyUnusedNetworksAsNest
CytoscapeAction
fr.curie.BiNoM.cytoscape.nestmanager.
CreateNestNetwork
CytoscapeAction
fr.curie.BiNoM.cytoscape.nestmanager.
CreateConnectionsBetweenNests
CytoscapeAction
fr.curie.BiNoM.cytoscape.nestmanager.
ClusterByShortPath
CytoscapePlugin
fr.curie.BiNoM.cytoscape.plugin.
BiNoMPlugin
fr.curie.BiNoM.pathways.
CytoscapeToBioPAXConverter
fr.curie.BiNoM.pathways.
CytoscapeToCellDesignerConverter
fr.curie.BiNoM.pathways.utils.acsn.
DatabaseComparison
fr.curie.BiNoM.pathways.analysis.structure.
DataPathConsistencyAnalyzer
fr.curie.BiNoM.pathways.analysis.structure.
DataPathConsistencyAnalyzer.optCutSetData
(implements java.lang.Comparable<T>)
org.xml.sax.helpers.DefaultHandler (implements org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler)
fr.curie.BiNoM.pathways.utils.
GraphXGMMLParser
fr.curie.BiNoM.cytoscape.nestmanager.
DestroyUnusedNetworksAsNestTask
fr.curie.BiNoM.cytoscape.netwop.
DoubleNetworkDifference
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.analysis.
EdgesFromOtherNetwork
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.analysis.
EdgesFromOtherNetworkTask
fr.curie.BiNoM.pathways.analysis.structure.
Element
fr.curie.BiNoM.pathways.analysis.structure.
Edge
fr.curie.BiNoM.pathways.analysis.structure.
Node
fr.curie.BiNoM.cytoscape.analysis.
ExcludeIntermediateNodes
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.celldesigner.analysis.
ExcludeIntermediateNodesTask
(implements fr.curie.BiNoM.lib.
AbstractTask
)
fr.curie.BiNoM.cytoscape.analysis.
ExcludeIntermediateNodesTask
(implements fr.curie.BiNoM.lib.
AbstractTask
)
fr.curie.BiNoM.celldesigner.analysis.
ExcludeIntermediateNodesTaskFactory
(implements fr.curie.BiNoM.analysis.
AbstractExcludeIntermediateNodesTaskFactory
)
fr.curie.BiNoM.cytoscape.analysis.
ExcludeIntermediateNodesTaskFactory
(implements fr.curie.BiNoM.analysis.
AbstractExcludeIntermediateNodesTaskFactory
)
fr.curie.BiNoM.cytoscape.celldesigner.
extractCellDesignerNotes
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.celldesigner.
extractCellDesignerNotesTask
fr.curie.BiNoM.cytoscape.celldesigner.
extractCellDesignerNotesTask.extractingNotesOptions
fr.curie.BiNoM.pathways.utils.
ExtractGMTFromCellDesigner
fr.curie.BiNoM.cytoscape.analysis.
ExtractReactionNetwork
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.celldesigner.analysis.
ExtractReactionNetworkTask
(implements fr.curie.BiNoM.lib.
AbstractTask
)
fr.curie.BiNoM.cytoscape.analysis.
ExtractReactionNetworkTask
fr.curie.BiNoM.cytoscape.analysis.
ExtractSubnetwork
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.analysis.
ExtractSubnetworkTask
javax.swing.filechooser.FileFilter
fr.curie.BiNoM.cytoscape.biopax.query.
OWLExtensionFilter
fr.curie.BiNoM.cytoscape.biopax.query.
XGMMLExtensionFilter
fr.curie.BiNoM.pathways.navicell.
FormatProteinNotes
fr.curie.BiNoM.pathways.utils.
GeneticInteractionNetworks
fr.curie.BiNoM.pathways.utils.
GMTFile
fr.curie.BiNoM.pathways.analysis.structure.
Graph
fr.curie.BiNoM.pathways.analysis.structure.
BiographUtils
fr.curie.BiNoM.pathways.analysis.structure.
BipartiteGraph
fr.curie.BiNoM.pathways.analysis.structure.
GraphAlgorithms
fr.curie.BiNoM.celldesigner.lib.
GraphDocumentFactory
fr.curie.BiNoM.cytoscape.lib.
GraphDocumentFactory
fr.curie.BiNoM.lib.
GraphicUtils
fr.curie.BiNoM.pathways.utils.
GraphUtils
fr.curie.BiNoM.cytoscape.ain.
ImportFromAINTask
fr.curie.BiNoM.cytoscape.ain.
ImportFromSimpleTextInfluenceFile
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.analysis.
IndexPathAnalysisTask
fr.curie.BiNoM.pathways.utils.
InsertCellDesignerParameters
fr.curie.BiNoM.pathways.utils.
insertMassActionLaws
fr.curie.BiNoM.cytoscape.nestmanager.
InteractionGraph
fr.curie.BiNoM.cytoscape.nestmanager.
ShortPathClustering
fr.curie.BiNoM.cytoscape.nestmanager.
InteractionGraph.IntEdge
fr.curie.BiNoM.cytoscape.nestmanager.
InteractionGraph.NodeDegree
fr.curie.BiNoM.pathways.utils.
KEGGAccess
fr.curie.BiNoM.pathways.utils.
LaplaceMatToSif
fr.curie.BiNoM.cytoscape.analysis.
LinearizeNetwork
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.celldesigner.analysis.
LinearizeNetworkTask
(implements fr.curie.BiNoM.lib.
AbstractTask
)
fr.curie.BiNoM.cytoscape.analysis.
LinearizeNetworkTask
fr.curie.BiNoM.cytoscape.utils.
ListAllNodes
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.utils.
ListAllReactions
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.pathways.utils.acsn.
MakeCanonicalView
fr.curie.BiNoM.cytoscape.analysis.
MaterialComponents
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.celldesigner.analysis.
MaterialComponentsTask
(implements fr.curie.BiNoM.lib.
AbstractTask
)
fr.curie.BiNoM.cytoscape.analysis.
MaterialComponentsTask
fr.curie.BiNoM.pathways.coloring.
Matrix2Color
fr.curie.BiNoM.cytoscape.utils.
MergeNetworksAndFilter
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.utils.
MergeNetworksAndFilterTask
(implements fr.curie.BiNoM.lib.
AbstractTask
)
fr.curie.BiNoM.cytoscape.utils.
MergeNetworksAndFilterTaskFactory
(implements fr.curie.BiNoM.analysis.
AbstractClusterNetworksTaskFactory
)
fr.curie.BiNoM.pathways.test.
mergingMaps
fr.curie.BiNoM.cytoscape.celldesigner.
MergingMaps
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.pathways.utils.
MergingMapsProcessor
fr.curie.BiNoM.cytoscape.celldesigner.
MergingMapsTask
fr.curie.BiNoM.cytoscape.celldesigner.
MergingMapsTask.MergingMapsOptions
fr.curie.BiNoM.cytoscape.celldesigner.
modifyCellDesignerNotes
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.pathways.utils.
ModifyCellDesignerNotes
fr.curie.BiNoM.pathways.utils.
ModifyCellDesignerNotes.AnnotationSection
fr.curie.BiNoM.cytoscape.celldesigner.
modifyCellDesignerNotesTask
fr.curie.BiNoM.cytoscape.analysis.
ModularView
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.celldesigner.analysis.
ModularViewTask
(implements fr.curie.BiNoM.lib.
AbstractTask
)
fr.curie.BiNoM.cytoscape.analysis.
ModularViewTask
(implements fr.curie.BiNoM.lib.
AbstractTask
)
fr.curie.BiNoM.celldesigner.analysis.
ModularViewTaskFactory
(implements fr.curie.BiNoM.analysis.
AbstractModularViewTaskFactory
)
fr.curie.BiNoM.cytoscape.analysis.
ModularViewTaskFactory
(implements fr.curie.BiNoM.analysis.
AbstractModularViewTaskFactory
)
fr.curie.BiNoM.cytoscape.nestmanager.
ModuleVisualStyle
fr.curie.BiNoM.cytoscape.analysis.
MonoMolecularReactionsAsEdges
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.celldesigner.analysis.
MonoMolecularReactionsAsEdgesTask
(implements fr.curie.BiNoM.lib.
AbstractTask
)
fr.curie.BiNoM.cytoscape.analysis.
MonoMolecularReactionsAsEdgesTask
fr.curie.BiNoM.cytoscape.nestmanager.
NestMerging
fr.curie.BiNoM.cytoscape.nestmanager.
NestUtils
fr.curie.BiNoM.celldesigner.lib.
NetworkFactory
fr.curie.BiNoM.cytoscape.lib.
NetworkFactory
fr.curie.BiNoM.cytoscape.netwop.
NetworkOperation
fr.curie.BiNoM.cytoscape.netwop.
NetworkDifference
fr.curie.BiNoM.cytoscape.netwop.
NetworkIntersection
fr.curie.BiNoM.cytoscape.netwop.
NetworkUnion
fr.curie.BiNoM.cytoscape.netwop.
NetworkOperation.Estimator
fr.curie.BiNoM.cytoscape.netwop.
NetworksUpdate
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.netwop.
NetworksUpdateTask
fr.curie.BiNoM.celldesigner.lib.
NetworkUtils
fr.curie.BiNoM.cytoscape.lib.
NetworkUtils
fr.curie.BiNoM.cytoscape.utils.
NodesAndEdgesClipboard
fr.curie.BiNoM.pathways.utils.
OFTENAnalysis
fr.curie.BiNoM.pathways.analysis.structure.
OmegaScoreData
(implements java.lang.Comparable<T>)
fr.curie.BiNoM.pathways.analysis.structure.
OptimalCombinationAnalyzer
fr.curie.BiNoM.cytoscape.analysis.
OptimalCutSetAnalyzer
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.analysis.
OptimalCutSetAnalyzerTask
fr.curie.BiNoM.pathways.utils.
OptionParser
fr.curie.BiNoM.pathways.utils.
Pair
fr.curie.BiNoM.pathways.
parseCellDesigner
fr.curie.BiNoM.cytoscape.utils.
PasteNodesAndEdges
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.pathways.analysis.structure.
Path
fr.curie.BiNoM.cytoscape.analysis.
PathAnalysis
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.analysis.
PathAnalysisTask
fr.curie.BiNoM.cytoscape.analysis.
PathConsistencyAnalyzer
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.analysis.
PathConsistencyAnalyzerBootstrapTask
fr.curie.BiNoM.cytoscape.analysis.
PathConsistencyAnalyzerTask
fr.curie.BiNoM.cytoscape.celldesigner.
pathwayStainingCellDesigner
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.celldesigner.
pathwayStainingCellDesignerTask
fr.curie.BiNoM.cytoscape.celldesigner.
pathwayStainingCellDesignerTask.stainingOptions
fr.curie.BiNoM.cytoscape.utils.
PavingData
PluginAction
fr.curie.BiNoM.celldesigner.analysis.
StronglyConnectedComponents
PluginAction
fr.curie.BiNoM.celldesigner.analysis.
PruneGraph
PluginAction
fr.curie.BiNoM.celldesigner.analysis.
MonoMolecularReactionsAsEdges
PluginAction
fr.curie.BiNoM.celldesigner.analysis.
ModularView
PluginAction
fr.curie.BiNoM.celldesigner.analysis.
MaterialComponents
PluginAction
fr.curie.BiNoM.celldesigner.analysis.
LinearizeNetwork
PluginAction
fr.curie.BiNoM.celldesigner.analysis.
ExtractReactionNetwork
PluginAction
fr.curie.BiNoM.celldesigner.analysis.
ExcludeIntermediateNodes
PluginAction
fr.curie.BiNoM.celldesigner.analysis.
CycleDecomposition
PluginAction
fr.curie.BiNoM.celldesigner.analysis.
ConnectedComponents
PluginAction
fr.curie.BiNoM.celldesigner.analysis.
ClusterNetworks
PluginAction
fr.curie.BiNoM.celldesigner.biopax.
BioPAXImportFromFile
PluginAction
fr.curie.BiNoM.celldesigner.biopax.propedit.
BioPAXPropertyManager
fr.curie.BiNoM.celldesigner.biopax.propedit.
BioPAXClassTree
fr.curie.BiNoM.celldesigner.biopax.propedit.
BioPAXPropertyBrowser
PluginAction
fr.curie.BiNoM.celldesigner.plugin.
BiNoMPluginAction
PluginAction
fr.curie.BiNoM.celldesigner.sample.
SampleAction
fr.curie.BiNoM.pathways.utils.
PowerfulTokenizer
(implements java.util.Enumeration<E>)
fr.curie.BiNoM.pathways.utils.
prepareCellDesignerFile
fr.curie.BiNoM.pathways.navicell.
ProduceClickableMap
fr.curie.BiNoM.cytoscape.celldesigner.
ProduceNaviCellMapFiles
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.celldesigner.
ProduceNaviCellMapFilesTask
fr.curie.BiNoM.cytoscape.analysis.
PruneGraph
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.celldesigner.analysis.
PruneGraphTask
(implements fr.curie.BiNoM.lib.
AbstractTask
)
fr.curie.BiNoM.cytoscape.analysis.
PruneGraphTask
fr.curie.BiNoM.cytoscape.nestmanager.
RecreateLostConnectionsInsideNestsTask
fr.curie.BiNoM.pathways.test.
RemoveNonExpressedProteins
fr.curie.BiNoM.pathways.wrappers.
SBML
fr.curie.BiNoM.cytoscape.sbml.
SBMLExportTask
fr.curie.BiNoM.cytoscape.sbml.
SBMLExportToFile
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.utils.
SelectDownstreamNeighbours
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.utils.
SelectEdgesBetweenSelectedNodes
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.utils.
SelectNodesByAttributeSubstring
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.cytoscape.utils.
SelectUpstreamNeighbours
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.pathways.utils.
SetOverlapAnalysis
fr.curie.BiNoM.cytoscape.nestmanager.
ShortPathClustering.Cluster
fr.curie.BiNoM.cytoscape.nestmanager.
ShortPathClustering.Distance
(implements java.lang.Comparable<T>)
fr.curie.BiNoM.cytoscape.utils.
ShowClipboardContents
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.pathways.utils.
SignsOfPaths
fr.curie.BiNoM.pathways.utils.
SimpleTable
fr.curie.BiNoM.pathways.converters.
SimpleTextInfluence2BioPAX
fr.curie.BiNoM.pathways.
SimpleTextInfluenceToBioPAX
fr.curie.BiNoM.pathways.analysis.structure.
Skeleton
fr.curie.BiNoM.pathways.utils.
SpeciesStructure
fr.curie.BiNoM.pathways.utils.
SpeciesStructure.SpeciesStructureComponent
fr.curie.BiNoM.pathways.utils.
SpeciesStructure.SpeciesStructureComponentModification
fr.curie.BiNoM.cytoscape.analysis.
StronglyConnectedComponents
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.celldesigner.analysis.
StronglyConnectedComponentsTask
(implements fr.curie.BiNoM.lib.
AbstractTask
)
fr.curie.BiNoM.cytoscape.analysis.
StronglyConnectedComponentsTask
fr.curie.BiNoM.pathways.analysis.structure.
StructureAnalysisUtils
fr.curie.BiNoM.pathways.analysis.structure.
StructureAnalysisUtils.Option
fr.curie.BiNoM.pathways.utils.
SubnetworkProperties
fr.curie.BiNoM.pathways.test.
test2
fr.curie.BiNoM.cytoscape.lib.
TaskManager
fr.curie.BiNoM.pathways.test.
test
fr.curie.BiNoM.pathways.test.
test1
fr.curie.BiNoM.pathways.test.
TestAIN
fr.curie.BiNoM.pathways.test.
TestAutomaticStructureAnalysis
fr.curie.BiNoM.pathways.test.
testBioBasePathway
fr.curie.BiNoM.pathways.test.
TestBioPAX
fr.curie.BiNoM.pathways.test.
testBioPAX1
fr.curie.BiNoM.pathways.test.
testBioPAXExtract
fr.curie.BiNoM.pathways.test.
testBioPAXExtractAPO
fr.curie.BiNoM.pathways.test.
TestBioPAXGraphMapper
fr.curie.BiNoM.pathways.test.
testBioPAXManipulation
fr.curie.BiNoM.pathways.test.
testBioPAXMerge
fr.curie.BiNoM.pathways.test.
testBioPAXQueryEngine
fr.curie.BiNoM.pathways.test.
TestBioPAXQueryEngineEB
fr.curie.BiNoM.pathways.test.
testCellDesigner
fr.curie.BiNoM.pathways.utils.
testCellDesignerFile
fr.curie.BiNoM.pathways.test.
testChangeProteinSize
fr.curie.BiNoM.pathways.test.
testCSML
fr.curie.BiNoM.pathways.test.
TestDialog
fr.curie.BiNoM.pathways.test.
testDialogs
fr.curie.BiNoM.pathways.test.
TestEB
fr.curie.BiNoM.pathways.test.
testEwingNetwork
fr.curie.BiNoM.pathways.test.
testExtractBioPAX
fr.curie.BiNoM.pathways.test.
TestFindAllPaths
fr.curie.BiNoM.pathways.test.
testFindingPath
fr.curie.BiNoM.pathways.test.
TestGraphAlgo
fr.curie.BiNoM.pathways.test.
TestGraphAlgo.ElemScore
fr.curie.BiNoM.pathways.test.
testGraphMappingService
fr.curie.BiNoM.pathways.test.
testGraphPruning
fr.curie.BiNoM.pathways.test.
testJastor
fr.curie.BiNoM.pathways.test.
TestJastorEB
fr.curie.BiNoM.pathways.test.
testJavolution
fr.curie.BiNoM.pathways.test.
TestMaterialComponents
fr.curie.BiNoM.pathways.test.
TestMergeMapsACSN
fr.curie.BiNoM.pathways.test.
testMergeNetworksAndFilter
fr.curie.BiNoM.pathways.test.
TestMergingMapsCD
fr.curie.BiNoM.pathways.test.
TestMergingMapsDialog
fr.curie.BiNoM.pathways.test.
TestMinCutSet
fr.curie.BiNoM.pathways.test.
TestModuleDecomposition
fr.curie.BiNoM.pathways.test.
testNamingService
fr.curie.BiNoM.celldesigner.lib.
testNetworkFactory
fr.curie.BiNoM.cytoscape.netwop.
TestNetworkOP
(implements java.awt.event.ActionListener)
fr.curie.BiNoM.pathways.test.
TestNIPath
fr.curie.BiNoM.pathways.test.
TestOPtCutSet
fr.curie.BiNoM.pathways.analysis.structure.
testPath
fr.curie.BiNoM.pathways.test.
TestPiquantDialog
fr.curie.BiNoM.pathways.test.
testRBpathway
fr.curie.BiNoM.pathways.test.
testRemoveEditPoints
fr.curie.BiNoM.pathways.test.
testSAX
fr.curie.BiNoM.pathways.test.
TestSetSet
fr.curie.BiNoM.pathways.test.
testStructureAnalysis
fr.curie.BiNoM.pathways.test.
testTranspath
fr.curie.BiNoM.pathways.test.
TestWordPress
fr.curie.BiNoM.pathways.test.
TestXGMML
com.ibm.adtech.jastor.ThingFactory
fr.curie.BiNoM.pathways.biopax.
biopax_DASH_level3_DOT_owlFactory
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
XrefImpl
(implements fr.curie.BiNoM.pathways.biopax.
Xref
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
UtilityClassImpl
(implements fr.curie.BiNoM.pathways.biopax.
UtilityClass
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
UnificationXrefImpl
(implements fr.curie.BiNoM.pathways.biopax.
UnificationXref
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
TransportWithBiochemicalReactionImpl
(implements fr.curie.BiNoM.pathways.biopax.
TransportWithBiochemicalReaction
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
TransportImpl
(implements fr.curie.BiNoM.pathways.biopax.
Transport
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
TissueVocabularyImpl
(implements fr.curie.BiNoM.pathways.biopax.
TissueVocabulary
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
TemplateReactionRegulationImpl
(implements fr.curie.BiNoM.pathways.biopax.
TemplateReactionRegulation
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
TemplateReactionImpl
(implements fr.curie.BiNoM.pathways.biopax.
TemplateReaction
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
StoichiometryImpl
(implements fr.curie.BiNoM.pathways.biopax.
Stoichiometry
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
SmallMoleculeReferenceImpl
(implements fr.curie.BiNoM.pathways.biopax.
SmallMoleculeReference
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
SmallMoleculeImpl
(implements fr.curie.BiNoM.pathways.biopax.
SmallMolecule
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
SequenceSiteImpl
(implements fr.curie.BiNoM.pathways.biopax.
SequenceSite
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
SequenceRegionVocabularyImpl
(implements fr.curie.BiNoM.pathways.biopax.
SequenceRegionVocabulary
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
SequenceModificationVocabularyImpl
(implements fr.curie.BiNoM.pathways.biopax.
SequenceModificationVocabulary
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
SequenceLocationImpl
(implements fr.curie.BiNoM.pathways.biopax.
SequenceLocation
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
SequenceIntervalImpl
(implements fr.curie.BiNoM.pathways.biopax.
SequenceInterval
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
ScoreImpl
(implements fr.curie.BiNoM.pathways.biopax.
Score
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
RnaRegionReferenceImpl
(implements fr.curie.BiNoM.pathways.biopax.
RnaRegionReference
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
RnaRegionImpl
(implements fr.curie.BiNoM.pathways.biopax.
RnaRegion
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
RnaReferenceImpl
(implements fr.curie.BiNoM.pathways.biopax.
RnaReference
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
RnaImpl
(implements fr.curie.BiNoM.pathways.biopax.
Rna
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
RelationshipXrefImpl
(implements fr.curie.BiNoM.pathways.biopax.
RelationshipXref
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
RelationshipTypeVocabularyImpl
(implements fr.curie.BiNoM.pathways.biopax.
RelationshipTypeVocabulary
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
PublicationXrefImpl
(implements fr.curie.BiNoM.pathways.biopax.
PublicationXref
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
ProvenanceImpl
(implements fr.curie.BiNoM.pathways.biopax.
Provenance
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
ProteinReferenceImpl
(implements fr.curie.BiNoM.pathways.biopax.
ProteinReference
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
ProteinImpl
(implements fr.curie.BiNoM.pathways.biopax.
Protein
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
PhysicalEntityImpl
(implements fr.curie.BiNoM.pathways.biopax.
PhysicalEntity
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
PhenotypeVocabularyImpl
(implements fr.curie.BiNoM.pathways.biopax.
PhenotypeVocabulary
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
PathwayStepImpl
(implements fr.curie.BiNoM.pathways.biopax.
PathwayStep
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
PathwayImpl
(implements fr.curie.BiNoM.pathways.biopax.
Pathway
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
MolecularInteractionImpl
(implements fr.curie.BiNoM.pathways.biopax.
MolecularInteraction
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
ModulationImpl
(implements fr.curie.BiNoM.pathways.biopax.
Modulation
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
ModificationFeatureImpl
(implements fr.curie.BiNoM.pathways.biopax.
ModificationFeature
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
KPrimeImpl
(implements fr.curie.BiNoM.pathways.biopax.
KPrime
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
InteractionVocabularyImpl
(implements fr.curie.BiNoM.pathways.biopax.
InteractionVocabulary
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
InteractionImpl
(implements fr.curie.BiNoM.pathways.biopax.
Interaction
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
GeneticInteractionImpl
(implements fr.curie.BiNoM.pathways.biopax.
GeneticInteraction
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
GeneImpl
(implements fr.curie.BiNoM.pathways.biopax.
Gene
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
FragmentFeatureImpl
(implements fr.curie.BiNoM.pathways.biopax.
FragmentFeature
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
ExperimentalFormVocabularyImpl
(implements fr.curie.BiNoM.pathways.biopax.
ExperimentalFormVocabulary
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
ExperimentalFormImpl
(implements fr.curie.BiNoM.pathways.biopax.
ExperimentalForm
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
EvidenceImpl
(implements fr.curie.BiNoM.pathways.biopax.
Evidence
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
EvidenceCodeVocabularyImpl
(implements fr.curie.BiNoM.pathways.biopax.
EvidenceCodeVocabulary
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
EntityReferenceTypeVocabularyImpl
(implements fr.curie.BiNoM.pathways.biopax.
EntityReferenceTypeVocabulary
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
EntityReferenceImpl
(implements fr.curie.BiNoM.pathways.biopax.
EntityReference
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
EntityImpl
(implements fr.curie.BiNoM.pathways.biopax.
Entity
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
EntityFeatureImpl
(implements fr.curie.BiNoM.pathways.biopax.
EntityFeature
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
DnaRegionReferenceImpl
(implements fr.curie.BiNoM.pathways.biopax.
DnaRegionReference
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
DnaRegionImpl
(implements fr.curie.BiNoM.pathways.biopax.
DnaRegion
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
DnaReferenceImpl
(implements fr.curie.BiNoM.pathways.biopax.
DnaReference
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
DnaImpl
(implements fr.curie.BiNoM.pathways.biopax.
Dna
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
DeltaGImpl
(implements fr.curie.BiNoM.pathways.biopax.
DeltaG
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
DegradationImpl
(implements fr.curie.BiNoM.pathways.biopax.
Degradation
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
CovalentBindingFeatureImpl
(implements fr.curie.BiNoM.pathways.biopax.
CovalentBindingFeature
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
ConversionImpl
(implements fr.curie.BiNoM.pathways.biopax.
Conversion
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
ControlledVocabularyImpl
(implements fr.curie.BiNoM.pathways.biopax.
ControlledVocabulary
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
ControlImpl
(implements fr.curie.BiNoM.pathways.biopax.
Control
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
ComplexImpl
(implements fr.curie.BiNoM.pathways.biopax.
Complex
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
ComplexAssemblyImpl
(implements fr.curie.BiNoM.pathways.biopax.
ComplexAssembly
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
ChemicalStructureImpl
(implements fr.curie.BiNoM.pathways.biopax.
ChemicalStructure
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
CellVocabularyImpl
(implements fr.curie.BiNoM.pathways.biopax.
CellVocabulary
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
CellularLocationVocabularyImpl
(implements fr.curie.BiNoM.pathways.biopax.
CellularLocationVocabulary
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
CatalysisImpl
(implements fr.curie.BiNoM.pathways.biopax.
Catalysis
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
BioSourceImpl
(implements fr.curie.BiNoM.pathways.biopax.
BioSource
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
BiochemicalReactionImpl
(implements fr.curie.BiNoM.pathways.biopax.
BiochemicalReaction
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
BiochemicalPathwayStepImpl
(implements fr.curie.BiNoM.pathways.biopax.
BiochemicalPathwayStep
)
com.ibm.adtech.jastor.ThingImpl
fr.curie.BiNoM.pathways.biopax.
BindingFeatureImpl
(implements fr.curie.BiNoM.pathways.biopax.
BindingFeature
)
java.lang.Throwable (implements java.io.Serializable)
java.lang.Exception
fr.curie.BiNoM.pathways.navicell.
ProduceClickableMap.NaviCellException
fr.curie.BiNoM.pathways.wrappers.
Transpath
fr.curie.BiNoM.pathways.converters.
Transpath2BioPAX
fr.curie.BiNoM.lib.
Utils
fr.curie.BiNoM.pathways.utils.
Utils
fr.curie.BiNoM.pathways.utils.
Utils.Transparency
fr.curie.BiNoM.cytoscape.lib.
VisualStyleDefinition
fr.curie.BiNoM.cytoscape.biopax.
BioPAXVisualStyleDefinition
fr.curie.BiNoM.cytoscape.celldesigner.
CellDesignerVisualStyleDefinition
fr.curie.BiNoM.cytoscape.lib.
VisualStyleDefinition.ImageDefinition
fr.curie.BiNoM.cytoscape.lib.
VisualStyleDefinition.ObjectMapping
fr.curie.BiNoM.cytoscape.lib.
VisualStyleFactory
fr.curie.BiNoM.pathways.navicell.
WordPressTest
fr.curie.BiNoM.pathways.test.
workMatlabOvidiu
fr.curie.BiNoM.pathways.wrappers.
XGMML
fr.curie.BiNoM.pathways.utils.
XGMMLExport
Interface Hierarchy
fr.curie.BiNoM.biopax.
AbstractBioPAXImportTaskFactory
fr.curie.BiNoM.analysis.
AbstractClusterNetworksTaskFactory
fr.curie.BiNoM.analysis.
AbstractExcludeIntermediateNodesTaskFactory
fr.curie.BiNoM.analysis.
AbstractModularViewTaskFactory
fr.curie.BiNoM.lib.
AbstractTask
fr.curie.BiNoM.pathways.biopax.
BindingFeatureListener
fr.curie.BiNoM.pathways.biopax.
BiochemicalPathwayStepListener
fr.curie.BiNoM.pathways.biopax.
BiochemicalReactionListener
fr.curie.BiNoM.pathways.biopax.
BioSourceListener
fr.curie.BiNoM.pathways.biopax.
CatalysisListener
fr.curie.BiNoM.pathways.biopax.
CellularLocationVocabularyListener
fr.curie.BiNoM.pathways.biopax.
CellVocabularyListener
fr.curie.BiNoM.pathways.biopax.
ChemicalStructureListener
fr.curie.BiNoM.pathways.biopax.
ComplexAssemblyListener
fr.curie.BiNoM.pathways.biopax.
ComplexListener
fr.curie.BiNoM.pathways.biopax.
ControlledVocabularyListener
fr.curie.BiNoM.pathways.biopax.
ControlListener
fr.curie.BiNoM.pathways.biopax.
ConversionListener
fr.curie.BiNoM.pathways.biopax.
CovalentBindingFeatureListener
fr.curie.BiNoM.pathways.biopax.
DegradationListener
fr.curie.BiNoM.pathways.biopax.
DeltaGListener
fr.curie.BiNoM.pathways.biopax.
DnaListener
fr.curie.BiNoM.pathways.biopax.
DnaReferenceListener
fr.curie.BiNoM.pathways.biopax.
DnaRegionListener
fr.curie.BiNoM.pathways.biopax.
DnaRegionReferenceListener
fr.curie.BiNoM.pathways.biopax.
Entity
fr.curie.BiNoM.pathways.biopax.
BiochemicalReaction
fr.curie.BiNoM.pathways.biopax.
TransportWithBiochemicalReaction
(also extends fr.curie.BiNoM.pathways.biopax.
Transport
)
fr.curie.BiNoM.pathways.biopax.
Catalysis
fr.curie.BiNoM.pathways.biopax.
Complex
fr.curie.BiNoM.pathways.biopax.
ComplexAssembly
fr.curie.BiNoM.pathways.biopax.
Control
fr.curie.BiNoM.pathways.biopax.
Catalysis
fr.curie.BiNoM.pathways.biopax.
Modulation
fr.curie.BiNoM.pathways.biopax.
TemplateReactionRegulation
fr.curie.BiNoM.pathways.biopax.
Conversion
fr.curie.BiNoM.pathways.biopax.
BiochemicalReaction
fr.curie.BiNoM.pathways.biopax.
TransportWithBiochemicalReaction
(also extends fr.curie.BiNoM.pathways.biopax.
Transport
)
fr.curie.BiNoM.pathways.biopax.
ComplexAssembly
fr.curie.BiNoM.pathways.biopax.
Degradation
fr.curie.BiNoM.pathways.biopax.
Transport
fr.curie.BiNoM.pathways.biopax.
TransportWithBiochemicalReaction
(also extends fr.curie.BiNoM.pathways.biopax.
BiochemicalReaction
)
fr.curie.BiNoM.pathways.biopax.
TransportWithBiochemicalReaction
(also extends fr.curie.BiNoM.pathways.biopax.
BiochemicalReaction
, fr.curie.BiNoM.pathways.biopax.
Transport
)
fr.curie.BiNoM.pathways.biopax.
Degradation
fr.curie.BiNoM.pathways.biopax.
Dna
fr.curie.BiNoM.pathways.biopax.
DnaRegion
fr.curie.BiNoM.pathways.biopax.
Gene
fr.curie.BiNoM.pathways.biopax.
GeneticInteraction
fr.curie.BiNoM.pathways.biopax.
Interaction
fr.curie.BiNoM.pathways.biopax.
BiochemicalReaction
fr.curie.BiNoM.pathways.biopax.
TransportWithBiochemicalReaction
(also extends fr.curie.BiNoM.pathways.biopax.
Transport
)
fr.curie.BiNoM.pathways.biopax.
Catalysis
fr.curie.BiNoM.pathways.biopax.
ComplexAssembly
fr.curie.BiNoM.pathways.biopax.
Control
fr.curie.BiNoM.pathways.biopax.
Catalysis
fr.curie.BiNoM.pathways.biopax.
Modulation
fr.curie.BiNoM.pathways.biopax.
TemplateReactionRegulation
fr.curie.BiNoM.pathways.biopax.
Conversion
fr.curie.BiNoM.pathways.biopax.
BiochemicalReaction
fr.curie.BiNoM.pathways.biopax.
TransportWithBiochemicalReaction
(also extends fr.curie.BiNoM.pathways.biopax.
Transport
)
fr.curie.BiNoM.pathways.biopax.
ComplexAssembly
fr.curie.BiNoM.pathways.biopax.
Degradation
fr.curie.BiNoM.pathways.biopax.
Transport
fr.curie.BiNoM.pathways.biopax.
TransportWithBiochemicalReaction
(also extends fr.curie.BiNoM.pathways.biopax.
BiochemicalReaction
)
fr.curie.BiNoM.pathways.biopax.
TransportWithBiochemicalReaction
(also extends fr.curie.BiNoM.pathways.biopax.
BiochemicalReaction
, fr.curie.BiNoM.pathways.biopax.
Transport
)
fr.curie.BiNoM.pathways.biopax.
Degradation
fr.curie.BiNoM.pathways.biopax.
GeneticInteraction
fr.curie.BiNoM.pathways.biopax.
Modulation
fr.curie.BiNoM.pathways.biopax.
MolecularInteraction
fr.curie.BiNoM.pathways.biopax.
TemplateReaction
fr.curie.BiNoM.pathways.biopax.
TemplateReactionRegulation
fr.curie.BiNoM.pathways.biopax.
Transport
fr.curie.BiNoM.pathways.biopax.
TransportWithBiochemicalReaction
(also extends fr.curie.BiNoM.pathways.biopax.
BiochemicalReaction
)
fr.curie.BiNoM.pathways.biopax.
TransportWithBiochemicalReaction
(also extends fr.curie.BiNoM.pathways.biopax.
BiochemicalReaction
, fr.curie.BiNoM.pathways.biopax.
Transport
)
fr.curie.BiNoM.pathways.biopax.
Modulation
fr.curie.BiNoM.pathways.biopax.
MolecularInteraction
fr.curie.BiNoM.pathways.biopax.
Pathway
fr.curie.BiNoM.pathways.biopax.
PhysicalEntity
fr.curie.BiNoM.pathways.biopax.
Complex
fr.curie.BiNoM.pathways.biopax.
Dna
fr.curie.BiNoM.pathways.biopax.
DnaRegion
fr.curie.BiNoM.pathways.biopax.
Protein
fr.curie.BiNoM.pathways.biopax.
Rna
fr.curie.BiNoM.pathways.biopax.
RnaRegion
fr.curie.BiNoM.pathways.biopax.
SmallMolecule
fr.curie.BiNoM.pathways.biopax.
Protein
fr.curie.BiNoM.pathways.biopax.
Rna
fr.curie.BiNoM.pathways.biopax.
RnaRegion
fr.curie.BiNoM.pathways.biopax.
SmallMolecule
fr.curie.BiNoM.pathways.biopax.
TemplateReaction
fr.curie.BiNoM.pathways.biopax.
TemplateReactionRegulation
fr.curie.BiNoM.pathways.biopax.
Transport
fr.curie.BiNoM.pathways.biopax.
TransportWithBiochemicalReaction
(also extends fr.curie.BiNoM.pathways.biopax.
BiochemicalReaction
)
fr.curie.BiNoM.pathways.biopax.
TransportWithBiochemicalReaction
(also extends fr.curie.BiNoM.pathways.biopax.
BiochemicalReaction
, fr.curie.BiNoM.pathways.biopax.
Transport
)
fr.curie.BiNoM.pathways.biopax.
EntityFeatureListener
fr.curie.BiNoM.pathways.biopax.
EntityListener
fr.curie.BiNoM.pathways.biopax.
EntityReferenceListener
fr.curie.BiNoM.pathways.biopax.
EntityReferenceTypeVocabularyListener
fr.curie.BiNoM.pathways.biopax.
EvidenceCodeVocabularyListener
fr.curie.BiNoM.pathways.biopax.
EvidenceListener
fr.curie.BiNoM.pathways.biopax.
ExperimentalFormListener
fr.curie.BiNoM.pathways.biopax.
ExperimentalFormVocabularyListener
fr.curie.BiNoM.pathways.biopax.
FragmentFeatureListener
fr.curie.BiNoM.pathways.biopax.
GeneListener
fr.curie.BiNoM.pathways.biopax.
GeneticInteractionListener
fr.curie.BiNoM.pathways.biopax.
InteractionListener
fr.curie.BiNoM.pathways.biopax.
InteractionVocabularyListener
fr.curie.BiNoM.pathways.biopax.
KPrimeListener
fr.curie.BiNoM.pathways.biopax.
ModificationFeatureListener
fr.curie.BiNoM.pathways.biopax.
ModulationListener
fr.curie.BiNoM.pathways.biopax.
MolecularInteractionListener
fr.curie.BiNoM.pathways.biopax.
PathwayListener
fr.curie.BiNoM.pathways.biopax.
PathwayStepListener
fr.curie.BiNoM.pathways.biopax.
PhenotypeVocabularyListener
fr.curie.BiNoM.pathways.biopax.
PhysicalEntityListener
fr.curie.BiNoM.pathways.biopax.
ProteinListener
fr.curie.BiNoM.pathways.biopax.
ProteinReferenceListener
fr.curie.BiNoM.pathways.biopax.
ProvenanceListener
fr.curie.BiNoM.pathways.biopax.
PublicationXrefListener
fr.curie.BiNoM.pathways.biopax.
RelationshipTypeVocabularyListener
fr.curie.BiNoM.pathways.biopax.
RelationshipXrefListener
fr.curie.BiNoM.pathways.biopax.
RnaListener
fr.curie.BiNoM.pathways.biopax.
RnaReferenceListener
fr.curie.BiNoM.pathways.biopax.
RnaRegionListener
fr.curie.BiNoM.pathways.biopax.
RnaRegionReferenceListener
fr.curie.BiNoM.pathways.biopax.
ScoreListener
fr.curie.BiNoM.pathways.biopax.
SequenceIntervalListener
fr.curie.BiNoM.pathways.biopax.
SequenceLocationListener
fr.curie.BiNoM.pathways.biopax.
SequenceModificationVocabularyListener
fr.curie.BiNoM.pathways.biopax.
SequenceRegionVocabularyListener
fr.curie.BiNoM.pathways.biopax.
SequenceSiteListener
fr.curie.BiNoM.pathways.biopax.
SmallMoleculeListener
fr.curie.BiNoM.pathways.biopax.
SmallMoleculeReferenceListener
fr.curie.BiNoM.pathways.biopax.
StoichiometryListener
fr.curie.BiNoM.pathways.biopax.
TemplateReactionListener
fr.curie.BiNoM.pathways.biopax.
TemplateReactionRegulationListener
fr.curie.BiNoM.pathways.biopax.
TissueVocabularyListener
fr.curie.BiNoM.pathways.biopax.
TransportListener
fr.curie.BiNoM.pathways.biopax.
TransportWithBiochemicalReactionListener
fr.curie.BiNoM.pathways.biopax.
UnificationXrefListener
fr.curie.BiNoM.pathways.biopax.
UtilityClass
fr.curie.BiNoM.pathways.biopax.
BindingFeature
fr.curie.BiNoM.pathways.biopax.
CovalentBindingFeature
(also extends fr.curie.BiNoM.pathways.biopax.
ModificationFeature
)
fr.curie.BiNoM.pathways.biopax.
BiochemicalPathwayStep
fr.curie.BiNoM.pathways.biopax.
BioSource
fr.curie.BiNoM.pathways.biopax.
CellularLocationVocabulary
fr.curie.BiNoM.pathways.biopax.
CellVocabulary
fr.curie.BiNoM.pathways.biopax.
ChemicalStructure
fr.curie.BiNoM.pathways.biopax.
ControlledVocabulary
fr.curie.BiNoM.pathways.biopax.
CellularLocationVocabulary
fr.curie.BiNoM.pathways.biopax.
CellVocabulary
fr.curie.BiNoM.pathways.biopax.
EntityReferenceTypeVocabulary
fr.curie.BiNoM.pathways.biopax.
EvidenceCodeVocabulary
fr.curie.BiNoM.pathways.biopax.
ExperimentalFormVocabulary
fr.curie.BiNoM.pathways.biopax.
InteractionVocabulary
fr.curie.BiNoM.pathways.biopax.
PhenotypeVocabulary
fr.curie.BiNoM.pathways.biopax.
RelationshipTypeVocabulary
fr.curie.BiNoM.pathways.biopax.
SequenceModificationVocabulary
fr.curie.BiNoM.pathways.biopax.
SequenceRegionVocabulary
fr.curie.BiNoM.pathways.biopax.
TissueVocabulary
fr.curie.BiNoM.pathways.biopax.
CovalentBindingFeature
(also extends fr.curie.BiNoM.pathways.biopax.
BindingFeature
, fr.curie.BiNoM.pathways.biopax.
ModificationFeature
)
fr.curie.BiNoM.pathways.biopax.
DeltaG
fr.curie.BiNoM.pathways.biopax.
DnaReference
fr.curie.BiNoM.pathways.biopax.
DnaRegionReference
fr.curie.BiNoM.pathways.biopax.
EntityFeature
fr.curie.BiNoM.pathways.biopax.
BindingFeature
fr.curie.BiNoM.pathways.biopax.
CovalentBindingFeature
(also extends fr.curie.BiNoM.pathways.biopax.
ModificationFeature
)
fr.curie.BiNoM.pathways.biopax.
CovalentBindingFeature
(also extends fr.curie.BiNoM.pathways.biopax.
BindingFeature
, fr.curie.BiNoM.pathways.biopax.
ModificationFeature
)
fr.curie.BiNoM.pathways.biopax.
FragmentFeature
fr.curie.BiNoM.pathways.biopax.
ModificationFeature
fr.curie.BiNoM.pathways.biopax.
CovalentBindingFeature
(also extends fr.curie.BiNoM.pathways.biopax.
BindingFeature
)
fr.curie.BiNoM.pathways.biopax.
EntityReference
fr.curie.BiNoM.pathways.biopax.
DnaReference
fr.curie.BiNoM.pathways.biopax.
DnaRegionReference
fr.curie.BiNoM.pathways.biopax.
ProteinReference
fr.curie.BiNoM.pathways.biopax.
RnaReference
fr.curie.BiNoM.pathways.biopax.
RnaRegionReference
fr.curie.BiNoM.pathways.biopax.
SmallMoleculeReference
fr.curie.BiNoM.pathways.biopax.
EntityReferenceTypeVocabulary
fr.curie.BiNoM.pathways.biopax.
Evidence
fr.curie.BiNoM.pathways.biopax.
EvidenceCodeVocabulary
fr.curie.BiNoM.pathways.biopax.
ExperimentalForm
fr.curie.BiNoM.pathways.biopax.
ExperimentalFormVocabulary
fr.curie.BiNoM.pathways.biopax.
FragmentFeature
fr.curie.BiNoM.pathways.biopax.
InteractionVocabulary
fr.curie.BiNoM.pathways.biopax.
KPrime
fr.curie.BiNoM.pathways.biopax.
ModificationFeature
fr.curie.BiNoM.pathways.biopax.
CovalentBindingFeature
(also extends fr.curie.BiNoM.pathways.biopax.
BindingFeature
)
fr.curie.BiNoM.pathways.biopax.
PathwayStep
fr.curie.BiNoM.pathways.biopax.
BiochemicalPathwayStep
fr.curie.BiNoM.pathways.biopax.
PhenotypeVocabulary
fr.curie.BiNoM.pathways.biopax.
ProteinReference
fr.curie.BiNoM.pathways.biopax.
Provenance
fr.curie.BiNoM.pathways.biopax.
PublicationXref
fr.curie.BiNoM.pathways.biopax.
RelationshipTypeVocabulary
fr.curie.BiNoM.pathways.biopax.
RelationshipXref
fr.curie.BiNoM.pathways.biopax.
RnaReference
fr.curie.BiNoM.pathways.biopax.
RnaRegionReference
fr.curie.BiNoM.pathways.biopax.
Score
fr.curie.BiNoM.pathways.biopax.
SequenceInterval
fr.curie.BiNoM.pathways.biopax.
SequenceLocation
fr.curie.BiNoM.pathways.biopax.
SequenceInterval
fr.curie.BiNoM.pathways.biopax.
SequenceSite
fr.curie.BiNoM.pathways.biopax.
SequenceModificationVocabulary
fr.curie.BiNoM.pathways.biopax.
SequenceRegionVocabulary
fr.curie.BiNoM.pathways.biopax.
SequenceSite
fr.curie.BiNoM.pathways.biopax.
SmallMoleculeReference
fr.curie.BiNoM.pathways.biopax.
Stoichiometry
fr.curie.BiNoM.pathways.biopax.
TissueVocabulary
fr.curie.BiNoM.pathways.biopax.
UnificationXref
fr.curie.BiNoM.pathways.biopax.
Xref
fr.curie.BiNoM.pathways.biopax.
PublicationXref
fr.curie.BiNoM.pathways.biopax.
RelationshipXref
fr.curie.BiNoM.pathways.biopax.
UnificationXref
fr.curie.BiNoM.pathways.biopax.
UtilityClassListener
fr.curie.BiNoM.pathways.biopax.
XrefListener
Enum Hierarchy
java.lang.Object
java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
fr.curie.BiNoM.biopax.propedit.
BioPAXAttrDescProto.Type
fr.curie.BiNoM.biopax.propedit.
BioPAXAttrDescProto.SubType
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