fr.curie.BiNoM.cytoscape.biopax
Class BioPAXExportTask

java.lang.Object
  fr.curie.BiNoM.cytoscape.biopax.BioPAXExportTask

All Implemented Interfaces:

cytoscape.task.Haltable, cytoscape.task.Task, java.lang.Runnable

public class BioPAXExportTask
extends java.lang.Object
implements cytoscape.task.Task

Constructor Summary

BioPAXExportTask(java.io.File file, boolean merge)

Method Summary

static void	findBioPAXSpeciesAndReactions(java.util.Vector species, java.util.Vector reactions)
cytoscape.CyNetwork	getCyNetwork()
java.lang.String	getTitle()
void	halt()
void	run()
void	setTaskMonitor(cytoscape.task.TaskMonitor taskMonitor)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BioPAXExportTask

public BioPAXExportTask(java.io.File file,
                        boolean merge)

Method Detail

halt

public void halt()

Specified by:

halt in interface cytoscape.task.Haltable

Specified by:

halt in interface cytoscape.task.Task

setTaskMonitor

public void setTaskMonitor(cytoscape.task.TaskMonitor taskMonitor)
                    throws java.lang.IllegalThreadStateException

Specified by:

setTaskMonitor in interface cytoscape.task.Task

Throws:

java.lang.IllegalThreadStateException

getTitle

public java.lang.String getTitle()

Specified by:

getTitle in interface cytoscape.task.Task

getCyNetwork

public cytoscape.CyNetwork getCyNetwork()

run

public void run()

Specified by:

run in interface cytoscape.task.Task

Specified by:

run in interface java.lang.Runnable

findBioPAXSpeciesAndReactions

public static void findBioPAXSpeciesAndReactions(java.util.Vector species,
                                                 java.util.Vector reactions)