BiNoM API documentation

See:
Description

Packages

fr.curie.BiNoM.cytoscape.analysis	Cytoscape interface to BiNoM structural network analysis methods
fr.curie.BiNoM.cytoscape.biopax	Cytoscape interface for working with BioPAX files
fr.curie.BiNoM.cytoscape.biopax.propedit	BiNoM property editor implementation
fr.curie.BiNoM.cytoscape.biopax.query	Cytoscape interface to BioPAX query engine
fr.curie.BiNoM.cytoscape.celldesigner	Cytoscape interface for working with CellDesigner files
fr.curie.BiNoM.cytoscape.lib	General-purpose utilities
fr.curie.BiNoM.cytoscape.netwop	Network manipulations directly with Cytoscape networks
fr.curie.BiNoM.cytoscape.plugin	Cytoscape plugins
fr.curie.BiNoM.cytoscape.sbml	Interface for exporting reaction network to SBML
fr.curie.BiNoM.cytoscape.utils	BiNoM network clipboard and other utilities
fr.curie.BiNoM.pathways	Set of converters for conversion of one systems biology format into an other.
fr.curie.BiNoM.pathways.analysis.structure	Tools for structural analysis of biological graphs
fr.curie.BiNoM.pathways.biopax	Java mapping of BioPAX version 2 (generated by Jastor)
fr.curie.BiNoM.pathways.converters	Little scripts for command-line file conversion
fr.curie.BiNoM.pathways.test	Diverse scripts (used internally, but you can find some examples of use there)
fr.curie.BiNoM.pathways.test.examples	Source code of some examples of using BiNoM as a library independently from Cytoscape
fr.curie.BiNoM.pathways.utils	Utility classes
fr.curie.BiNoM.pathways.wrappers	Auxilary containers representing different systems biology formats

Title: BiNoM (BIological NetwOrk Manager) Pathway library and Cytoscape plugin

BiNoM Description: Various tools for managing and analyzing biological pathways

Bioinformatics Service of Institute of Curie, Paris, France (http://bioinfo.curie.fr)

For tutorial and examples and tool documentation, please see:

• BiNoM tool page

Version:

1.0

Author:

Andrei Zinovyev, Eric Viara