AccessionNumberTable
analyseInstallSpyLog
analyzeSBMLFile
Attribute
BiNoMPlugin
biochemicalReaction
biochemicalReactionImpl
biochemicalReactionListener
BiographUtils
BioPAX
BioPAX2Cytoscape
BioPAX2SBML
biopax_DASH_level2_DOT_owlFactory
BioPAXAssociateSource
BioPAXAssociateSourceTask
BioPAXAttrDesc
BioPAXClassDesc
BioPAXClassDesc.HierarchyScanner
BioPAXClassDescFactory
BioPAXClassTree
BioPAXClassTreeFrame
BioPAXConnectedComponents
BioPAXDBRepository
BioPAXDisplayIndexInfo
BioPAXDisplayIndexInfoDialog
BioPAXDoubleAttrDesc
BioPAXDoubleListAttrDesc
BioPAXExport
BioPAXExportTask
BioPAXExportToFile
BioPAXGenerateIndex
BioPAXGenerateIndexDialog
BioPAXGenerateIndexTask
BioPAXGraphMapper
BioPAXGraphMappingService
BioPAXGraphQuery
BioPAXGraphQueryEngine
BioPAXImport
BioPAXImportDialog
BioPAXImportFromFile
BioPAXImportFromURL
BioPAXImportTask
BioPAXIndexPathAnalysis
BioPAXIndexRepository
BioPAXIntegerAttrDesc
BioPAXIntegerListAttrDesc
BioPAXLoadIndex
BioPAXLoadIndexDialog
BioPAXLoadIndexTask
BioPAXMerge
BioPAXNamingService
BioPAXNamingServiceManager
BioPAXObject
BioPAXObjectAttrDesc
BioPAXObjectFactory
BioPAXObjectListAttrDesc
BioPAXPathAnalysis
BioPAXPropertyBrowser
BioPAXPropertyBrowserFrame
BioPAXPropertyBrowserPanel
BioPAXPropertyEditor
BioPAXPropertyManager
BioPAXRepository
BioPAXSaveAssociated
BioPAXSelectEntities
BioPAXSelectEntitiesDialog
BioPAXSelectEntitiesTask
BioPAXSourceDB
BioPAXStandardQuery
BioPAXStandardQuery
BioPAXStandardQueryDialog
BioPAXStandardQueryTask
BioPAXStringAttrDesc
BioPAXStringListAttrDesc
BioPAXSyncNetworks
BioPAXSyncNetworksDialog
BioPAXToCytoscapeConverter
BioPAXToCytoscapeConverter.Graph
BioPAXToCytoscapeConverter.Option
BioPAXToggleNamingService
BioPAXToSBMLConverter
BioPAXUtilities
BioPAXViewQueryLog
BioPAXViewQueryLogDialog
BioPAXVisualStyleDefinition
bioSource
bioSourceImpl
bioSourceListener
BipartiteGraph
catalysis
catalysisImpl
catalysisListener
CDesigner2BioPAX
CellDesigner
CellDesigner2BioPAX
CellDesigner2Cytoscape
CellDesignerAssociateSource
CellDesignerAssociateSourceTask
CellDesignerColorSpecies
CellDesignerExport
CellDesignerExportTask
CellDesignerExportToFile
CellDesignerImport
CellDesignerImportFromFile
CellDesignerImportTask
CellDesignerSourceDB
CellDesignerToBioPAXConverter
CellDesignerToCytoscapeConverter
CellDesignerToCytoscapeConverter.Graph
CellDesignerVisualStyleDefinition
chemicalStructure
chemicalStructureImpl
chemicalStructureListener
ClusterNetworks
ClusterNetworksDialog
ClusterNetworksTask
complex
complexAssembly
complexAssemblyImpl
complexAssemblyListener
complexImpl
complexListener
confidence
confidenceImpl
confidenceListener
ConnectedComponents
ConnectedComponentsTask
control
controlImpl
controlListener
conversion
conversionImpl
conversionListener
CopySelectedNodesAndEdges
CycleDecomposition
CycleDecompositionTask
Cytoscape2BioPAX
Cytoscape2CellDesigner
CytoscapeToBioPAXConverter
CytoscapeToCellDesignerConverter
dataSource
dataSourceImpl
dataSourceListener
deltaGprimeO
deltaGprimeOImpl
deltaGprimeOListener
dna
dnaImpl
dnaListener
DoubleNetworkDifference
DoubleNetworkDifferenceDialog
Edge
EdgesFromOtherNetwork
EdgesFromOtherNetworkDialog
EdgesFromOtherNetworkTask
Element
entity
entityImpl
entityListener
evidence
evidenceImpl
evidenceListener
experimentalForm
experimentalFormImpl
experimentalFormListener
externalReferenceUtilityClass
externalReferenceUtilityClassImpl
externalReferenceUtilityClassListener
ExtractReactionNetwork
ExtractReactionNetworkTask
Graph
GraphAlgorithms
GraphDocumentFactory
GraphicUtils
GraphXGMMLParser
IndexPathAnalysisDialog
IndexPathAnalysisTask
insertMassActionLaws
interaction
interactionImpl
interactionListener
kPrime
kPrimeImpl
kPrimeListener
LaplaceMatToSif
MaterialComponents
MaterialComponentsTask
MLLabel
ModularView
ModularViewDialog
ModularViewTask
modulation
modulationImpl
modulationListener
MonoMolecularReactionsAsEdges
MonoMolecularReactionsAsEdgesTask
NetworkDifference
NetworkFactory
NetworkIntersection
NetworkOperation
NetworkOperation.Estimator
NetworksUpdate
NetworksUpdateConfirmDialog
NetworksUpdateDialog
NetworksUpdateTask
NetworkUnion
NetworkUtils
Node
NodesAndEdgesClipboard
openControlledVocabulary
openControlledVocabularyImpl
openControlledVocabularyListener
OWLExtensionFilter
parseBioPAX
parseCellDesigner
PasteNodesAndEdges
PasteNodesAndEdgesDialog
PathAnalysis
PathAnalysisDialog
PathAnalysisTask
pathway
pathwayImpl
pathwayListener
pathwayStep
pathwayStepImpl
pathwayStepListener
physicalEntity
physicalEntityImpl
physicalEntityListener
physicalEntityParticipant
physicalEntityParticipantImpl
physicalEntityParticipantListener
physicalInteraction
physicalInteractionImpl
physicalInteractionListener
PowerfulTokenizer
prepareCellDesignerFile
ProduceClickableMap
protein
proteinImpl
proteinListener
PruneGraph
PruneGraphTask
publicationXref
publicationXrefImpl
publicationXrefListener
relationshipXref
relationshipXrefImpl
relationshipXrefListener
rna
rnaImpl
rnaListener
SBML
SBMLExport
SBMLExportTask
SBMLExportToFile
SelectEdgesBetweenSelectedNodes
sequenceFeature
sequenceFeatureImpl
sequenceFeatureListener
sequenceInterval
sequenceIntervalImpl
sequenceIntervalListener
sequenceLocation
sequenceLocationImpl
sequenceLocationListener
sequenceParticipant
sequenceParticipantImpl
sequenceParticipantListener
sequenceSite
sequenceSiteImpl
sequenceSiteListener
ShowClipboardContents
ShowClipboardContentsDialog
SimpleTable
Skeleton
smallMolecule
smallMoleculeImpl
smallMoleculeListener
StronglyConnectedComponents
StronglyConnectedComponentsTask
StructureAnalysisUtils
StructureAnalysisUtils.Option
TaskManager
test
test1
TestAutomaticStructureAnalysis
testBioBasePathway
TestBioPAX
testBioPAX1
testBioPAXExtract
testBioPAXMerge
testBioPAXQueryEngine
testCellDesigner
testEwingNetwork
testExtractBioPAX
testGraphMappingService
testJastor
testJavolution
TestModuleDecomposition
testNamingService
TestNetworkOP
testRBpathway
testSAX
testStructureAnalysis
testTranspath
Transpath
Transpath2BioPAX
transport
transportImpl
transportListener
transportWithBiochemicalReaction
transportWithBiochemicalReactionImpl
transportWithBiochemicalReactionListener
unificationXref
unificationXrefImpl
unificationXrefListener
utilityClass
utilityClassImpl
utilityClassListener
Utils
Utils
VisualStyleDefinition
VisualStyleDefinition.ImageDefinition
VisualStyleDefinition.ObjectMapping
VisualStyleFactory
workMatlabOvidiu
XGMML
XGMMLExport
XGMMLExtensionFilter
xref
xrefImpl
xrefListener
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