fr.curie.BiNoM.cytoscape.biopax.query
Class BioPAXIndexRepository

java.lang.Object
  fr.curie.BiNoM.cytoscape.biopax.query.BioPAXRepository
      fr.curie.BiNoM.cytoscape.biopax.query.BioPAXIndexRepository

public class BioPAXIndexRepository
extends BioPAXRepository

Constructor Summary

BioPAXIndexRepository()

Method Summary

void	addToReport(java.lang.String newMess)
void	clearReport()
AccessionNumberTable	getAccessionNumberTable()
java.lang.String	getAccNumberFileName()
BioPAXGraphQueryEngine	getBioPAXGraphQueryEngine()
java.lang.String	getDatabaseFileName()
static BioPAXIndexRepository	getInstance()
java.lang.String	getReport()
void	setAccessionNumberTable(AccessionNumberTable acctable)
void	setAccNumberFileName(java.lang.String dbfn)
void	setBioPAXGraphQueryEngine(BioPAXGraphQueryEngine beng)
void	setDatabaseFileName(java.lang.String dbfn)
void	setReport(java.lang.String s)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BioPAXIndexRepository

public BioPAXIndexRepository()

Method Detail

setAccessionNumberTable

public void setAccessionNumberTable(AccessionNumberTable acctable)

getAccessionNumberTable

public AccessionNumberTable getAccessionNumberTable()

setBioPAXGraphQueryEngine

public void setBioPAXGraphQueryEngine(BioPAXGraphQueryEngine beng)

getBioPAXGraphQueryEngine

public BioPAXGraphQueryEngine getBioPAXGraphQueryEngine()

getInstance

public static BioPAXIndexRepository getInstance()

setDatabaseFileName

public void setDatabaseFileName(java.lang.String dbfn)

getDatabaseFileName

public java.lang.String getDatabaseFileName()

setAccNumberFileName

public void setAccNumberFileName(java.lang.String dbfn)

getAccNumberFileName

public java.lang.String getAccNumberFileName()

addToReport

public void addToReport(java.lang.String newMess)

clearReport

public void clearReport()

getReport

public java.lang.String getReport()

setReport

public void setReport(java.lang.String s)