fr.curie.BiNoM.cytoscape.biopax.query
Class BioPAXSelectEntitiesTask

java.lang.Object
  fr.curie.BiNoM.cytoscape.biopax.query.BioPAXSelectEntitiesTask

All Implemented Interfaces:

cytoscape.task.Haltable, cytoscape.task.Task, java.lang.Runnable

public class BioPAXSelectEntitiesTask
extends java.lang.Object
implements cytoscape.task.Task

Field Summary

static int	INPUT_CURRENT_NETWORK
static int	INPUT_LISTOF_NAMES
static int	OUTPUT_CURRENT_NETWORK
static int	OUTPUT_NEW_NETWORK

Constructor Summary

BioPAXSelectEntitiesTask(BioPAXGraphQuery q, int itype, int otype)

Method Summary

BioPAXGraphQuery	getBioPAXGraphQuery()
java.lang.String	getTitle()
void	halt()
void	run()
void	setTaskMonitor(cytoscape.task.TaskMonitor taskMonitor)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

INPUT_CURRENT_NETWORK

public static int INPUT_CURRENT_NETWORK

INPUT_LISTOF_NAMES

public static int INPUT_LISTOF_NAMES

OUTPUT_CURRENT_NETWORK

public static int OUTPUT_CURRENT_NETWORK

OUTPUT_NEW_NETWORK

public static int OUTPUT_NEW_NETWORK

Constructor Detail

BioPAXSelectEntitiesTask

public BioPAXSelectEntitiesTask(BioPAXGraphQuery q,
                                int itype,
                                int otype)

Method Detail

getBioPAXGraphQuery

public BioPAXGraphQuery getBioPAXGraphQuery()

run

public void run()

Specified by:

run in interface cytoscape.task.Task

Specified by:

run in interface java.lang.Runnable

getTitle

public java.lang.String getTitle()

Specified by:

getTitle in interface cytoscape.task.Task

halt

public void halt()

Specified by:

halt in interface cytoscape.task.Haltable

Specified by:

halt in interface cytoscape.task.Task

setTaskMonitor

public void setTaskMonitor(cytoscape.task.TaskMonitor taskMonitor)
                    throws java.lang.IllegalThreadStateException

Specified by:

setTaskMonitor in interface cytoscape.task.Task

Throws:

java.lang.IllegalThreadStateException