fr.curie.BiNoM.cytoscape.celldesigner
Class CellDesignerExport

java.lang.Object
  fr.curie.BiNoM.cytoscape.celldesigner.CellDesignerExport

All Implemented Interfaces:

cytoscape.task.Haltable, cytoscape.task.Task, java.lang.Runnable

public class CellDesignerExport
extends java.lang.Object
implements cytoscape.task.Task

Constructor Summary

CellDesignerExport(java.io.File file)

Method Summary

static void	findSBMLSpeciesAndReactions(org.sbml.x2001.ns.celldesigner.SbmlDocument sbml, java.util.Vector species, java.util.Vector speciesAliases, java.util.Vector reactions, java.util.Vector degraded)
cytoscape.CyNetwork	getCyNetwork()
java.lang.String	getTitle()
void	halt()
void	run()
void	setTaskMonitor(cytoscape.task.TaskMonitor taskMonitor)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CellDesignerExport

public CellDesignerExport(java.io.File file)

Method Detail

halt

public void halt()

Specified by:

halt in interface cytoscape.task.Haltable

Specified by:

halt in interface cytoscape.task.Task

setTaskMonitor

public void setTaskMonitor(cytoscape.task.TaskMonitor taskMonitor)
                    throws java.lang.IllegalThreadStateException

Specified by:

setTaskMonitor in interface cytoscape.task.Task

Throws:

java.lang.IllegalThreadStateException

getTitle

public java.lang.String getTitle()

Specified by:

getTitle in interface cytoscape.task.Task

getCyNetwork

public cytoscape.CyNetwork getCyNetwork()

run

public void run()

Specified by:

run in interface cytoscape.task.Task

Specified by:

run in interface java.lang.Runnable

findSBMLSpeciesAndReactions

public static void findSBMLSpeciesAndReactions(org.sbml.x2001.ns.celldesigner.SbmlDocument sbml,
                                               java.util.Vector species,
                                               java.util.Vector speciesAliases,
                                               java.util.Vector reactions,
                                               java.util.Vector degraded)