fr.curie.BiNoM.cytoscape.lib
Class NetworkUtils

java.lang.Object
  fr.curie.BiNoM.cytoscape.lib.NetworkUtils

public class NetworkUtils
extends java.lang.Object

Constructor Summary

NetworkUtils()

Method Summary

static void	addEdgeAndConnectedNodes(cytoscape.CyEdge edge, cytoscape.CyNetwork toNetw)
static void	addEdgeAndConnectedNodesAndReportPositions(cytoscape.CyEdge edge, cytoscape.CyNetwork fromNetw, cytoscape.CyNetwork toNetw)
static void	addNodeAndReportPosition(cytoscape.CyNode node, cytoscape.CyNetwork fromNetw, cytoscape.CyNetwork toNetw)
static void	clearAndCopy(cytoscape.CyNetwork dst_netw, cytoscape.CyNetwork src_netw)
static cytoscape.CyNetwork	clearNetwork(cytoscape.CyNetwork netw)
static void	copy(cytoscape.CyNetwork dst_netw, cytoscape.CyNetwork src_netw)
static cytoscape.CyNetwork	copy(java.lang.String title, cytoscape.CyNetwork src_netw)
static cytoscape.CyNetwork	getNetwork(int idx)
static cytoscape.CyNetwork	getNetwork(java.lang.String title)
static java.lang.String[]	getNetworkNames()
static java.lang.String[]	getNetworkNames(java.lang.String suffix)
static cytoscape.CyNetwork[]	getNetworks(int[] idxs)
static cytoscape.CyNetwork	makeBackupNetwork(cytoscape.CyNetwork netw)
static cytoscape.CyNetwork	makeBackupNetwork(cytoscape.CyNetwork netw, java.lang.String suffix)
static void	reportPosition(cytoscape.CyNode node, cytoscape.view.CyNetworkView fromView, cytoscape.view.CyNetworkView toView)
static void	setNetworkContents(cytoscape.CyNetwork toNetw, cytoscape.CyNetwork fromNetw)
static void	setNetworkContentsAndReportPositions(cytoscape.CyNetwork toNetw, cytoscape.CyNetwork fromNetw)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NetworkUtils

public NetworkUtils()

Method Detail

reportPosition

public static void reportPosition(cytoscape.CyNode node,
                                  cytoscape.view.CyNetworkView fromView,
                                  cytoscape.view.CyNetworkView toView)

addNodeAndReportPosition

public static void addNodeAndReportPosition(cytoscape.CyNode node,
                                            cytoscape.CyNetwork fromNetw,
                                            cytoscape.CyNetwork toNetw)

setNetworkContents

public static void setNetworkContents(cytoscape.CyNetwork toNetw,
                                      cytoscape.CyNetwork fromNetw)

setNetworkContentsAndReportPositions

public static void setNetworkContentsAndReportPositions(cytoscape.CyNetwork toNetw,
                                                        cytoscape.CyNetwork fromNetw)

clearNetwork

public static cytoscape.CyNetwork clearNetwork(cytoscape.CyNetwork netw)

addEdgeAndConnectedNodes

public static void addEdgeAndConnectedNodes(cytoscape.CyEdge edge,
                                            cytoscape.CyNetwork toNetw)

addEdgeAndConnectedNodesAndReportPositions

public static void addEdgeAndConnectedNodesAndReportPositions(cytoscape.CyEdge edge,
                                                              cytoscape.CyNetwork fromNetw,
                                                              cytoscape.CyNetwork toNetw)

getNetwork

public static cytoscape.CyNetwork getNetwork(java.lang.String title)

getNetworkNames

public static java.lang.String[] getNetworkNames()

getNetworkNames

public static java.lang.String[] getNetworkNames(java.lang.String suffix)

getNetwork

public static cytoscape.CyNetwork getNetwork(int idx)

copy

public static cytoscape.CyNetwork copy(java.lang.String title,
                                       cytoscape.CyNetwork src_netw)

copy

public static void copy(cytoscape.CyNetwork dst_netw,
                        cytoscape.CyNetwork src_netw)

clearAndCopy

public static void clearAndCopy(cytoscape.CyNetwork dst_netw,
                                cytoscape.CyNetwork src_netw)

makeBackupNetwork

public static cytoscape.CyNetwork makeBackupNetwork(cytoscape.CyNetwork netw,
                                                    java.lang.String suffix)

makeBackupNetwork

public static cytoscape.CyNetwork makeBackupNetwork(cytoscape.CyNetwork netw)

getNetworks

public static cytoscape.CyNetwork[] getNetworks(int[] idxs)