fr.curie.BiNoM.pathways
Class BioPAXToCytoscapeConverter.Option

java.lang.Object
  fr.curie.BiNoM.pathways.BioPAXToCytoscapeConverter.Option

Enclosing class:

BioPAXToCytoscapeConverter

public static class BioPAXToCytoscapeConverter.Option
extends java.lang.Object

Set of conversion options

Field Summary

boolean	distinguishCompartments
boolean	distinguishModifications
boolean	includeInteractions
boolean	includeNextLinks
boolean	includePathways
boolean	makeRootPathwayNode

Constructor Summary

BioPAXToCytoscapeConverter.Option()

Method Summary

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

makeRootPathwayNode

public boolean makeRootPathwayNode

includeNextLinks

public boolean includeNextLinks

includePathways

public boolean includePathways

includeInteractions

public boolean includeInteractions

distinguishCompartments

public boolean distinguishCompartments

distinguishModifications

public boolean distinguishModifications

Constructor Detail

BioPAXToCytoscapeConverter.Option

public BioPAXToCytoscapeConverter.Option()