fr.curie.BiNoM.pathways
Class BioPAXToSBMLConverter.BioPAXSpecies

java.lang.Object
  fr.curie.BiNoM.pathways.BioPAXToSBMLConverter.BioPAXSpecies

Enclosing class:

BioPAXToSBMLConverter

public class BioPAXToSBMLConverter.BioPAXSpecies
extends java.lang.Object

Represents BioPAX physicalEntityParticipants grouped into distinctive chemical species (entity, characterized by a definite location and a definite modification).

Field Summary

java.lang.String	id
java.lang.String	name
java.util.Vector	sinonymSpecies List of identical (from the point of view of SBML) physicalEntityParticipants
java.lang.String	type Type of BioPAX object linked to the species (protein, complex, dna)

Constructor Summary

BioPAXToSBMLConverter.BioPAXSpecies()

Method Summary

java.lang.String

toString()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

id

public java.lang.String id

name

public java.lang.String name

type

public java.lang.String type

Type of BioPAX object linked to the species (protein, complex, dna)

sinonymSpecies

public java.util.Vector sinonymSpecies

List of identical (from the point of view of SBML) physicalEntityParticipants

Constructor Detail

BioPAXToSBMLConverter.BioPAXSpecies

public BioPAXToSBMLConverter.BioPAXSpecies()

Method Detail

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object