fr.curie.BiNoM.pathways
Class CytoscapeToCellDesignerConverter

java.lang.Object
  fr.curie.BiNoM.pathways.CytoscapeToCellDesignerConverter

public class CytoscapeToCellDesignerConverter
extends java.lang.Object

Class used to export a part of CellDesigner file, using only species and reactions visualized in the current Cytoscape network

Constructor Summary

CytoscapeToCellDesignerConverter()

Method Summary

static void	copyLayout(org.sbml.x2001.ns.celldesigner.SbmlDocument sbml, edu.rpi.cs.xgmml.GraphDocument gr)
static void	filterIDs(org.sbml.x2001.ns.celldesigner.SbmlDocument sbml, edu.rpi.cs.xgmml.GraphDocument gr)
static void	filterIDs(org.sbml.x2001.ns.celldesigner.SbmlDocument sbml, java.util.Vector species, java.util.Vector speciesAliases, java.util.Vector reactions, java.util.Vector degraded)
static void	filterIDsCompleteReactions(org.sbml.x2001.ns.celldesigner.SbmlDocument sbml, java.util.Vector species, java.util.Vector speciesAliases, java.util.Vector reactions, java.util.Vector degraded)
static void	main(java.lang.String[] args)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CytoscapeToCellDesignerConverter

public CytoscapeToCellDesignerConverter()

Method Detail

main

public static void main(java.lang.String[] args)

copyLayout

public static void copyLayout(org.sbml.x2001.ns.celldesigner.SbmlDocument sbml,
                              edu.rpi.cs.xgmml.GraphDocument gr)

filterIDs

public static void filterIDs(org.sbml.x2001.ns.celldesigner.SbmlDocument sbml,
                             edu.rpi.cs.xgmml.GraphDocument gr)

filterIDs

public static void filterIDs(org.sbml.x2001.ns.celldesigner.SbmlDocument sbml,
                             java.util.Vector species,
                             java.util.Vector speciesAliases,
                             java.util.Vector reactions,
                             java.util.Vector degraded)

filterIDsCompleteReactions

public static void filterIDsCompleteReactions(org.sbml.x2001.ns.celldesigner.SbmlDocument sbml,
                                              java.util.Vector species,
                                              java.util.Vector speciesAliases,
                                              java.util.Vector reactions,
                                              java.util.Vector degraded)