fr.curie.BiNoM.pathways
Class parseCellDesigner

java.lang.Object
  fr.curie.BiNoM.pathways.parseCellDesigner

public class parseCellDesigner
extends java.lang.Object

Utility class for listing some CellDesigner information as a readable text

Constructor Summary

parseCellDesigner()

Method Summary

static java.util.HashMap	getCompartmentHash(org.sbml.x2001.ns.celldesigner.SbmlDocument.Sbml sbml)
static void	main(java.lang.String[] args)
static void	printAntisenseRNAList(org.sbml.x2001.ns.celldesigner.SbmlDocument.Sbml sbml)
static void	printGeneList(org.sbml.x2001.ns.celldesigner.SbmlDocument.Sbml sbml)
static void	printPhenotypeList(org.sbml.x2001.ns.celldesigner.SbmlDocument.Sbml sbml)
static void	printProteinsList(org.sbml.x2001.ns.celldesigner.SbmlDocument.Sbml sbml, boolean realNames)
static void	printReactionList(org.sbml.x2001.ns.celldesigner.SbmlDocument.Sbml sbml, boolean realNames)
static void	printRNAList(org.sbml.x2001.ns.celldesigner.SbmlDocument.Sbml sbml)
static void	printSmallMoleculeList(org.sbml.x2001.ns.celldesigner.SbmlDocument.Sbml sbml)
static void	printSpeciesList(org.sbml.x2001.ns.celldesigner.SbmlDocument.Sbml sbml)
static void	ptintComplexList(org.sbml.x2001.ns.celldesigner.SbmlDocument.Sbml sbml)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

parseCellDesigner

public parseCellDesigner()

Method Detail

main

public static void main(java.lang.String[] args)

printProteinsList

public static void printProteinsList(org.sbml.x2001.ns.celldesigner.SbmlDocument.Sbml sbml,
                                     boolean realNames)

getCompartmentHash

public static java.util.HashMap getCompartmentHash(org.sbml.x2001.ns.celldesigner.SbmlDocument.Sbml sbml)

printSpeciesList

public static void printSpeciesList(org.sbml.x2001.ns.celldesigner.SbmlDocument.Sbml sbml)

printReactionList

public static void printReactionList(org.sbml.x2001.ns.celldesigner.SbmlDocument.Sbml sbml,
                                     boolean realNames)

printPhenotypeList

public static void printPhenotypeList(org.sbml.x2001.ns.celldesigner.SbmlDocument.Sbml sbml)

printGeneList

public static void printGeneList(org.sbml.x2001.ns.celldesigner.SbmlDocument.Sbml sbml)

printRNAList

public static void printRNAList(org.sbml.x2001.ns.celldesigner.SbmlDocument.Sbml sbml)

printAntisenseRNAList

public static void printAntisenseRNAList(org.sbml.x2001.ns.celldesigner.SbmlDocument.Sbml sbml)

printSmallMoleculeList

public static void printSmallMoleculeList(org.sbml.x2001.ns.celldesigner.SbmlDocument.Sbml sbml)

ptintComplexList

public static void ptintComplexList(org.sbml.x2001.ns.celldesigner.SbmlDocument.Sbml sbml)