fr.curie.BiNoM.pathways.test
Class TestBioPAX

java.lang.Object
  fr.curie.BiNoM.pathways.test.TestBioPAX

public class TestBioPAX
extends java.lang.Object

Field Summary

static java.lang.String	biopaxString
static java.lang.String	namespaceFileString
static java.lang.String	namespaceString

Constructor Summary

TestBioPAX()

Method Summary

static void	addBiopaxLinkedProperty(java.lang.String propertyName, java.lang.String linkedresourceName, java.lang.String individualName, com.hp.hpl.jena.ontology.OntModel model)
static void	addBiopaxProperty(java.lang.String propertyLiteral, java.lang.String propertyName, java.lang.String individualName, com.hp.hpl.jena.ontology.OntModel model)
static void	createBiopaxIndividual(java.lang.String individualName, java.lang.String individualClass, com.hp.hpl.jena.ontology.OntModel model)
static void	main(java.lang.String[] args)
static void	saveToFile(java.lang.String fileName, com.hp.hpl.jena.ontology.OntModel model)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

biopaxString

public static java.lang.String biopaxString

namespaceString

public static java.lang.String namespaceString

namespaceFileString

public static java.lang.String namespaceFileString

Constructor Detail

TestBioPAX

public TestBioPAX()

Method Detail

main

public static void main(java.lang.String[] args)

createBiopaxIndividual

public static void createBiopaxIndividual(java.lang.String individualName,
                                          java.lang.String individualClass,
                                          com.hp.hpl.jena.ontology.OntModel model)

addBiopaxProperty

public static void addBiopaxProperty(java.lang.String propertyLiteral,
                                     java.lang.String propertyName,
                                     java.lang.String individualName,
                                     com.hp.hpl.jena.ontology.OntModel model)

addBiopaxLinkedProperty

public static void addBiopaxLinkedProperty(java.lang.String propertyName,
                                           java.lang.String linkedresourceName,
                                           java.lang.String individualName,
                                           com.hp.hpl.jena.ontology.OntModel model)

saveToFile

public static void saveToFile(java.lang.String fileName,
                              com.hp.hpl.jena.ontology.OntModel model)