fr.curie.BiNoM.cytoscape.biopax
Class BioPAXVisualStyleDefinition

java.lang.Object
  fr.curie.BiNoM.cytoscape.lib.VisualStyleDefinition
      fr.curie.BiNoM.cytoscape.biopax.BioPAXVisualStyleDefinition

public class BioPAXVisualStyleDefinition
extends VisualStyleDefinition

Nested Class Summary

Nested classes/interfaces inherited from class fr.curie.BiNoM.cytoscape.lib.VisualStyleDefinition

VisualStyleDefinition.ImageDefinition, VisualStyleDefinition.ObjectMapping

Field Summary

static java.lang.String	EDGE_ACTIVATION
static java.lang.String	EDGE_ATTR
static java.lang.String	EDGE_CATALYSIS_ACTIVATION
static java.lang.String	EDGE_CATALYSIS_INHIBITION
static java.lang.String	EDGE_CATALYSIS_UNKNOWN
static java.lang.String	EDGE_CONTAINS
static java.lang.String	EDGE_CONTROL_ACTIVATION
static java.lang.String	EDGE_CONTROL_INHIBITION
static java.lang.String	EDGE_CONTROL_UNKNOWN
static java.lang.String	EDGE_INHIBITION
static java.lang.String	EDGE_INTERSECTION
static java.lang.String	EDGE_LEFT
static java.lang.String	EDGE_MODULATION_ACTIVATION
static java.lang.String	EDGE_MODULATION_INHIBITION
static java.lang.String	EDGE_MODULATION_UNKNOWN
static java.lang.String	EDGE_NEXT
static java.lang.String	EDGE_physicalInteraction
static java.lang.String	EDGE_REFERENCE
static java.lang.String	EDGE_RIGHT
static java.lang.String	EDGE_SPECIESOF
static java.lang.String	EDGE_STEP
static java.lang.String	NODE_ATTR
static java.lang.String	NODE_BIOCHEMICAL_REACTION
static java.lang.String	NODE_CATALYSIS
static java.lang.String	NODE_COMPLEX
static java.lang.String	NODE_COMPLEX_ASSEMBLY
static java.lang.String	NODE_CONTROL
static java.lang.String	NODE_CONVERSION
static java.lang.String	NODE_DNA
static java.lang.String	NODE_INTERACTION
static java.lang.String	NODE_MODULATION
static java.lang.String	NODE_PATHWAY
static java.lang.String	NODE_PATHWAY_STEP
static java.lang.String	NODE_PHYSICAL_ENTITY
static java.lang.String	NODE_PHYSICAL_INTERACTION
static java.lang.String	NODE_PROTEIN
static java.lang.String	NODE_PUBLICATION
static java.lang.String	NODE_RNA
static java.lang.String	NODE_SMALL_MOLECULE
static java.lang.String	NODE_TRANSPORT
static java.lang.String	NODE_TRANSPORT_WITH_BIOCHEMICAL_REACTION

Method Summary

static BioPAXVisualStyleDefinition

getInstance()

Methods inherited from class fr.curie.BiNoM.cytoscape.lib.VisualStyleDefinition

getDefaultEdgeLineColor, getDefaultEdgeLineType, getDefaultEdgeSourceArrow, getDefaultEdgeTargetArrow, getDefaultNodeBorderColor, getDefaultNodeBorderLineType, getDefaultNodeColor, getDefaultNodeShape, getDefaultNodeSize, getEdgeAttribute, getEdgeLineColorMapping, getEdgeLineTypeMapping, getEdgeSourceArrowMapping, getEdgeTargetArrowMapping, getName, getNodeAttribute, getNodeBorderColorMapping, getNodeBorderLineTypeMapping, getNodeColorMapping, getNodeImageMapping, getNodeShapeMapping, getNodeSizeMapping

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

NODE_ATTR

public static final java.lang.String NODE_ATTR

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Constant Field Values

NODE_INTERACTION

public static final java.lang.String NODE_INTERACTION

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Constant Field Values

NODE_PHYSICAL_INTERACTION

public static final java.lang.String NODE_PHYSICAL_INTERACTION

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Constant Field Values

NODE_CONTROL

public static final java.lang.String NODE_CONTROL

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Constant Field Values

NODE_CATALYSIS

public static final java.lang.String NODE_CATALYSIS

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Constant Field Values

NODE_MODULATION

public static final java.lang.String NODE_MODULATION

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Constant Field Values

NODE_CONVERSION

public static final java.lang.String NODE_CONVERSION

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Constant Field Values

NODE_TRANSPORT

public static final java.lang.String NODE_TRANSPORT

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Constant Field Values

NODE_BIOCHEMICAL_REACTION

public static final java.lang.String NODE_BIOCHEMICAL_REACTION

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Constant Field Values

NODE_TRANSPORT_WITH_BIOCHEMICAL_REACTION

public static final java.lang.String NODE_TRANSPORT_WITH_BIOCHEMICAL_REACTION

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Constant Field Values

NODE_COMPLEX_ASSEMBLY

public static final java.lang.String NODE_COMPLEX_ASSEMBLY

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Constant Field Values

NODE_PHYSICAL_ENTITY

public static final java.lang.String NODE_PHYSICAL_ENTITY

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Constant Field Values

NODE_COMPLEX

public static final java.lang.String NODE_COMPLEX

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Constant Field Values

NODE_DNA

public static final java.lang.String NODE_DNA

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Constant Field Values

NODE_RNA

public static final java.lang.String NODE_RNA

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Constant Field Values

NODE_SMALL_MOLECULE

public static final java.lang.String NODE_SMALL_MOLECULE

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Constant Field Values

NODE_PROTEIN

public static final java.lang.String NODE_PROTEIN

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Constant Field Values

NODE_PATHWAY

public static final java.lang.String NODE_PATHWAY

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Constant Field Values

NODE_PATHWAY_STEP

public static final java.lang.String NODE_PATHWAY_STEP

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Constant Field Values

NODE_PUBLICATION

public static final java.lang.String NODE_PUBLICATION

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Constant Field Values

EDGE_ATTR

public static final java.lang.String EDGE_ATTR

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Constant Field Values

EDGE_ACTIVATION

public static final java.lang.String EDGE_ACTIVATION

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Constant Field Values

EDGE_CATALYSIS_UNKNOWN

public static final java.lang.String EDGE_CATALYSIS_UNKNOWN

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Constant Field Values

EDGE_CATALYSIS_ACTIVATION

public static final java.lang.String EDGE_CATALYSIS_ACTIVATION

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Constant Field Values

EDGE_CATALYSIS_INHIBITION

public static final java.lang.String EDGE_CATALYSIS_INHIBITION

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Constant Field Values

EDGE_MODULATION_UNKNOWN

public static final java.lang.String EDGE_MODULATION_UNKNOWN

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Constant Field Values

EDGE_MODULATION_ACTIVATION

public static final java.lang.String EDGE_MODULATION_ACTIVATION

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Constant Field Values

EDGE_MODULATION_INHIBITION

public static final java.lang.String EDGE_MODULATION_INHIBITION

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Constant Field Values

EDGE_CONTROL_UNKNOWN

public static final java.lang.String EDGE_CONTROL_UNKNOWN

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Constant Field Values

EDGE_CONTROL_ACTIVATION

public static final java.lang.String EDGE_CONTROL_ACTIVATION

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Constant Field Values

EDGE_CONTROL_INHIBITION

public static final java.lang.String EDGE_CONTROL_INHIBITION

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Constant Field Values

EDGE_INHIBITION

public static final java.lang.String EDGE_INHIBITION

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Constant Field Values

EDGE_CONTAINS

public static final java.lang.String EDGE_CONTAINS

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Constant Field Values

EDGE_STEP

public static final java.lang.String EDGE_STEP

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Constant Field Values

EDGE_NEXT

public static final java.lang.String EDGE_NEXT

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Constant Field Values

EDGE_LEFT

public static final java.lang.String EDGE_LEFT

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Constant Field Values

EDGE_RIGHT

public static final java.lang.String EDGE_RIGHT

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Constant Field Values

EDGE_SPECIESOF

public static final java.lang.String EDGE_SPECIESOF

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Constant Field Values

EDGE_physicalInteraction

public static final java.lang.String EDGE_physicalInteraction

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Constant Field Values

EDGE_REFERENCE

public static final java.lang.String EDGE_REFERENCE

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Constant Field Values

EDGE_INTERSECTION

public static final java.lang.String EDGE_INTERSECTION

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Constant Field Values

Method Detail

getInstance

public static BioPAXVisualStyleDefinition getInstance()