Constant Field Values

Contents

• fr.curie.*

fr.curie.*

fr.curie.BiNoM.cytoscape.biopax.BioPAXVisualStyleDefinition

public static final java.lang.String	EDGE_ACTIVATION	"ACTIVATION"
public static final java.lang.String	EDGE_ATTR	"BIOPAX_EDGE_TYPE"
public static final java.lang.String	EDGE_CATALYSIS_ACTIVATION	"CATALYSIS_ACTIVATION"
public static final java.lang.String	EDGE_CATALYSIS_INHIBITION	"CATALYSIS_INHIBITION"
public static final java.lang.String	EDGE_CATALYSIS_UNKNOWN	"CATALYSIS_UNKNOWN"
public static final java.lang.String	EDGE_CONTAINS	"CONTAINS"
public static final java.lang.String	EDGE_CONTROL_ACTIVATION	"CONTROL_ACTIVATION"
public static final java.lang.String	EDGE_CONTROL_INHIBITION	"CONTROL_INHIBITION"
public static final java.lang.String	EDGE_CONTROL_UNKNOWN	"CONTROL_UNKNOWN"
public static final java.lang.String	EDGE_INHIBITION	"INHIBITION"
public static final java.lang.String	EDGE_INTERSECTION	"INTERSECTION"
public static final java.lang.String	EDGE_LEFT	"LEFT"
public static final java.lang.String	EDGE_MODULATION_ACTIVATION	"MODULATION_ACTIVATION"
public static final java.lang.String	EDGE_MODULATION_INHIBITION	"MODULATION_INHIBITION"
public static final java.lang.String	EDGE_MODULATION_UNKNOWN	"MODULATION_UNKNOWN"
public static final java.lang.String	EDGE_NEXT	"NEXT"
public static final java.lang.String	EDGE_physicalInteraction	"physicalInteraction"
public static final java.lang.String	EDGE_REFERENCE	"REFERENCE"
public static final java.lang.String	EDGE_RIGHT	"RIGHT"
public static final java.lang.String	EDGE_SPECIESOF	"SPECIESOF"
public static final java.lang.String	EDGE_STEP	"STEP"
public static final java.lang.String	NODE_ATTR	"BIOPAX_NODE_TYPE"
public static final java.lang.String	NODE_BIOCHEMICAL_REACTION	"biochemicalReaction"
public static final java.lang.String	NODE_CATALYSIS	"catalysis"
public static final java.lang.String	NODE_COMPLEX	"complex"
public static final java.lang.String	NODE_COMPLEX_ASSEMBLY	"complexAssembly"
public static final java.lang.String	NODE_CONTROL	"control"
public static final java.lang.String	NODE_CONVERSION	"conversion"
public static final java.lang.String	NODE_DNA	"dna"
public static final java.lang.String	NODE_INTERACTION	"interaction"
public static final java.lang.String	NODE_MODULATION	"modulation"
public static final java.lang.String	NODE_PATHWAY	"pathway"
public static final java.lang.String	NODE_PATHWAY_STEP	"pathwayStep"
public static final java.lang.String	NODE_PHYSICAL_ENTITY	"physicalEntity"
public static final java.lang.String	NODE_PHYSICAL_INTERACTION	"physicalInteraction"
public static final java.lang.String	NODE_PROTEIN	"protein"
public static final java.lang.String	NODE_PUBLICATION	"publication"
public static final java.lang.String	NODE_RNA	"rna"
public static final java.lang.String	NODE_SMALL_MOLECULE	"smallMolecule"
public static final java.lang.String	NODE_TRANSPORT	"transport"
public static final java.lang.String	NODE_TRANSPORT_WITH_BIOCHEMICAL_REACTION	"transportWithBiochemicalReaction"

fr.curie.BiNoM.cytoscape.celldesigner.CellDesignerVisualStyleDefinition

public static final java.lang.String	EDGE_ATTR	"CELLDESIGNER_EDGE_TYPE"
public static final java.lang.String	EDGE_CATALYSIS	"CATALYSIS"
public static final java.lang.String	EDGE_CATALYSIS_UNKNOWN	"CATALYSIS_UNKNOWN"
public static final java.lang.String	EDGE_INHIBITION	"INHIBITION"
public static final java.lang.String	EDGE_INTERSECTION	"INTERSECTION"
public static final java.lang.String	EDGE_LEFT	"LEFT"
public static final java.lang.String	EDGE_MODIFIES	"MODIFIES"
public static final java.lang.String	EDGE_RIGHT	"RIGHT"
public static final java.lang.String	EDGE_TRANSCRIPTIONAL_ACTIVATION	"TRANSCRIPTIONAL_ACTIVATION"
public static final java.lang.String	EDGE_TRANSCRIPTIONAL_INHIBITION	"TRANSCRIPTIONAL_INHIBITION"
public static final java.lang.String	NODE_ATTR	"CELLDESIGNER_NODE_TYPE"
public static final java.lang.String	NODE_CATALYSIS	"CATALYSIS"
public static final java.lang.String	NODE_COMPLEX	"COMPLEX"
public static final java.lang.String	NODE_GENE	"GENE"
public static final java.lang.String	NODE_HETERODIMER_ASSOCIATION	"HETERODIMER_ASSOCIATION"
public static final java.lang.String	NODE_HETERODIMER_DISSOCIATION	"DISSOCIATION"
public static final java.lang.String	NODE_INHIBITION	"INHIBITION"
public static final java.lang.String	NODE_ION	"ION"
public static final java.lang.String	NODE_KNOWN_TRANSITION_OMITTED	"KNOWN_TRANSITION_OMITTED"
public static final java.lang.String	NODE_PATHWAY	"PATHWAY"
public static final java.lang.String	NODE_PHENOTYPE	"PHENOTYPE"
public static final java.lang.String	NODE_PROTEIN	"PROTEIN"
public static final java.lang.String	NODE_RNA	"RNA"
public static final java.lang.String	NODE_SIMPLE_MOLECULE	"SIMPLE_MOLECULE"
public static final java.lang.String	NODE_STATE_TRANSITION	"STATE_TRANSITION"
public static final java.lang.String	NODE_TRANSCRIPTIONAL_ACTIVATION	"TRANSCRIPTIONAL_ACTIVATION"
public static final java.lang.String	NODE_TRANSCRIPTIONAL_INHIBITION	"TRANSCRIPTIONAL_INHIBITION"
public static final java.lang.String	NODE_TRANSLATIONAL_ACTIVATION	"TRANSLATIONAL_ACTIVATION"
public static final java.lang.String	NODE_TRANSLATIONAL_INHIBITION	"TRANSLATIONAL_INHIBITION"
public static final java.lang.String	NODE_TRANSPORT	"TRANSPORT"
public static final java.lang.String	NODE_TRUNCATION	"TRUNCATION"
public static final java.lang.String	NODE_UNKNOWN_REACTION	"UNKNOWN_REACTION"
public static final java.lang.String	NODE_UNKNOWN_TRANSITION	"UNKNOWN_TRANSITION"

fr.curie.BiNoM.cytoscape.lib.NetworkFactory

public static final java.lang.String

ATTR_SEP

"@@@"

fr.curie.BiNoM.pathways.BioPAXToCytoscapeConverter

public static final int	FULL_INDEX_CONVERSION	0
public static final int	PATHWAY_STRUCTURE_CONVERSION	2
public static final int	PROTEIN_PROTEIN_INTERACTION_CONVERSION	3
public static final int	REACTION_NETWORK_CONVERSION	1