fr.curie.BiNoM.pathways.analysis.structure
Class BipartiteGraph

java.lang.Object
  fr.curie.BiNoM.pathways.analysis.structure.Graph
      fr.curie.BiNoM.pathways.analysis.structure.BipartiteGraph

public class BipartiteGraph
extends Graph

Was supposed to deal with Bi-partite graphs specifically but has not been used yet

Field Summary

Fields inherited from class fr.curie.BiNoM.pathways.analysis.structure.Graph

allGraphs, countGraphs, EdgeHash, Edges, globalComment, metaNodes, name, NodeHash, NodeIndexHash, Nodes, selectedIds, startId, useIDsForOutput, writeHangingNodes

Constructor Summary

BipartiteGraph()

Method Summary

Methods inherited from class fr.curie.BiNoM.pathways.analysis.structure.Graph

addConnections, addEdge, addEdgeIdUnique, addEdges, addMetanodeConnections, addNode, addNodes, addNodesFromEdges, assignEdgeIds, calcNodesInOut, createIndexNodeHash, edgesConnectingSubGraphs, getCreateEdge, getCreateNode, getEdge, getEdge, getEdgeByLabel, getEdgeIndex, getHangingNodes, getNode, getNodeByLabel, getNodeIndex, getNodesByLabelInclusion, getSelectedNodes, identicalNodes, includesNodes, includesNodesPercentage, intersection, main, makeCopy, makeEdgeDoubleSense, printGraphList, removeNode, removeNodes, removeObsoleteEdges, saveAsCytoscapeGML, saveAsCytoscapeSif, saveAsCytoscapeXGMML, subtractNodes

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BipartiteGraph

public BipartiteGraph()