fr.curie.BiNoM.pathways.analysis.structure
Class Node

java.lang.Object
  fr.curie.BiNoM.pathways.analysis.structure.Element
      fr.curie.BiNoM.pathways.analysis.structure.Node

public class Node
extends Element

Field Summary

float	coefficientInConservationLaw Auxillary property for analysis of conservation laws
static int	DIAMOND
static int	ELLIPSE
float	h Node height
static int	HEXAGON
java.lang.String	Id Node unique id
boolean	includedInConservationLaw Auxillary property for analysis of conservation laws
java.util.Vector	incomingEdges List of all in-going edges.
java.lang.Object	link Some object associated.
java.awt.Color	NodeBorderColor
int	NodeBorderWidth
int	NodeClass 0 - species 1 - reaction 2 - cycle 3 - metanode
java.lang.String	NodeClassInfo
java.awt.Color	NodeColor
java.lang.String	NodeInfo
java.lang.String	NodeLabel
int	NodeShape
int	NodeSize
static int	OCTAGON
java.util.Vector	outcomingEdges List of all out-going edges.
static int	PARALLELOGRAM
static int	RECTANGLE
static int	RECTANGLE_ROUNDED
static int	TRIANGLE
float	w Node width
float	x Node position x
float	y Node position y

Fields inherited from class fr.curie.BiNoM.pathways.analysis.structure.Element

Attributes

Constructor Summary

Node()

Method Summary

Node	makeCopy() Clones the node

Methods inherited from class fr.curie.BiNoM.pathways.analysis.structure.Element

getAttributesWithSubstringInName, getAttributeValues, getFirstAttributeValue, setAttributeValueUnique

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

Id

public java.lang.String Id

Node unique id

NodeLabel

public java.lang.String NodeLabel

NodeShape

public int NodeShape

RECTANGLE

public static int RECTANGLE

ELLIPSE

public static int ELLIPSE

RECTANGLE_ROUNDED

public static int RECTANGLE_ROUNDED

DIAMOND

public static int DIAMOND

HEXAGON

public static int HEXAGON

OCTAGON

public static int OCTAGON

PARALLELOGRAM

public static int PARALLELOGRAM

TRIANGLE

public static int TRIANGLE

NodeColor

public java.awt.Color NodeColor

NodeBorderColor

public java.awt.Color NodeBorderColor

NodeBorderWidth

public int NodeBorderWidth

NodeSize

public int NodeSize

NodeClass

public int NodeClass

0 - species 1 - reaction 2 - cycle 3 - metanode

coefficientInConservationLaw

public float coefficientInConservationLaw

Auxillary property for analysis of conservation laws

includedInConservationLaw

public boolean includedInConservationLaw

Auxillary property for analysis of conservation laws

NodeInfo

public java.lang.String NodeInfo

NodeClassInfo

public java.lang.String NodeClassInfo

x

public float x

Node position x

y

public float y

Node position y

w

public float w

Node width

h

public float h

Node height

incomingEdges

public java.util.Vector incomingEdges

List of all in-going edges. Filled by Graph.CalcInOut function

outcomingEdges

public java.util.Vector outcomingEdges

List of all out-going edges. Filled by Graph.CalcInOut function

link

public java.lang.Object link

Some object associated. For example, if it is a metanode, then a subgraph is associated

Constructor Detail

Node

public Node()

Method Detail

makeCopy

public Node makeCopy()

Clones the node