fr.curie.BiNoM.pathways.biopax
Class bioSourceImpl

java.lang.Object
  extended by com.hp.hpl.jena.rdf.listeners.StatementListener
      extended by com.ibm.adtech.jastor.ThingImpl
          extended by fr.curie.BiNoM.pathways.biopax.bioSourceImpl
All Implemented Interfaces:
com.hp.hpl.jena.rdf.model.ModelChangedListener, com.ibm.adtech.jastor.Thing, bioSource, externalReferenceUtilityClass, utilityClass

public class bioSourceImpl
extends com.ibm.adtech.jastor.ThingImpl
implements bioSource

Implementation of bioSource Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.

(URI: http://www.biopax.org/release/biopax-level2.owl#bioSource)



Field Summary
 
Fields inherited from class com.ibm.adtech.jastor.ThingImpl
copyright
 
Fields inherited from interface fr.curie.BiNoM.pathways.biopax.bioSource
TYPE
 
Fields inherited from interface com.ibm.adtech.jastor.Thing
copyright
 
Method Summary
 void addCOMMENT(java.lang.String COMMENT)
          Add a 'COMMENT' property value
 void addedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)
           
 void clearCache()
           
 openControlledVocabulary getCELLTYPE()
          Gets the 'CELLTYPE' property value
 java.util.Iterator getCOMMENT()
          Iterates through the 'COMMENT' property values.
 java.lang.String getNAME()
          Gets the 'NAME' property value
 unificationXref getTAXON_DASH_XREF()
          Gets the 'TAXON_DASH_XREF' property value
 openControlledVocabulary getTISSUE()
          Gets the 'TISSUE' property value
 java.util.List listStatements()
           
 void registerListener(com.ibm.adtech.jastor.ThingListener listener)
           
 void removeCOMMENT(java.lang.String COMMENT)
          Remove a 'COMMENT' property value.
 void removedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)
           
 openControlledVocabulary setCELLTYPE()
          Sets the 'CELLTYPE' property value to an anonymous node
 void setCELLTYPE(openControlledVocabulary CELLTYPE)
          Sets the 'CELLTYPE' property value
 openControlledVocabulary setCELLTYPE(com.hp.hpl.jena.rdf.model.Resource resource)
          Sets the 'CELLTYPE' property value to the given resource, and add's rdf:type properties.
 void setNAME(java.lang.String NAME)
          Sets the 'NAME' property value
 unificationXref setTAXON_DASH_XREF()
          Sets the 'TAXON_DASH_XREF' property value to an anonymous node
 unificationXref setTAXON_DASH_XREF(com.hp.hpl.jena.rdf.model.Resource resource)
          Sets the 'TAXON_DASH_XREF' property value to the given resource, and add's rdf:type properties.
 void setTAXON_DASH_XREF(unificationXref TAXON_DASH_XREF)
          Sets the 'TAXON_DASH_XREF' property value
 openControlledVocabulary setTISSUE()
          Sets the 'TISSUE' property value to an anonymous node
 void setTISSUE(openControlledVocabulary TISSUE)
          Sets the 'TISSUE' property value
 openControlledVocabulary setTISSUE(com.hp.hpl.jena.rdf.model.Resource resource)
          Sets the 'TISSUE' property value to the given resource, and add's rdf:type properties.
 void unregisterListener(com.ibm.adtech.jastor.ThingListener listener)
           
 
Methods inherited from class com.ibm.adtech.jastor.ThingImpl
equals, isRDFType, model, removeStatements, resource, toString, uri
 
Methods inherited from class com.hp.hpl.jena.rdf.listeners.StatementListener
addedStatements, addedStatements, addedStatements, addedStatements, notifyEvent, removedStatements, removedStatements, removedStatements, removedStatements
 
Methods inherited from class java.lang.Object
getClass, hashCode, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface com.ibm.adtech.jastor.Thing
isRDFType, model, removeStatements, resource, uri
 

Method Detail

listStatements

public java.util.List listStatements()
Specified by:
listStatements in interface com.ibm.adtech.jastor.Thing
Overrides:
listStatements in class com.ibm.adtech.jastor.ThingImpl

clearCache

public void clearCache()
Specified by:
clearCache in interface com.ibm.adtech.jastor.Thing
Overrides:
clearCache in class com.ibm.adtech.jastor.ThingImpl

getCOMMENT

public java.util.Iterator getCOMMENT()
                              throws com.ibm.adtech.jastor.JastorException
Description copied from interface: utilityClass
Iterates through the 'COMMENT' property values. This Iteartor may be used to remove all such values.

Specified by:
getCOMMENT in interface utilityClass
Returns:
Iterator of String
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
utilityClass.COMMENTProperty

addCOMMENT

public void addCOMMENT(java.lang.String COMMENT)
                throws com.ibm.adtech.jastor.JastorException
Description copied from interface: utilityClass
Add a 'COMMENT' property value

Specified by:
addCOMMENT in interface utilityClass
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
utilityClass.COMMENTProperty

removeCOMMENT

public void removeCOMMENT(java.lang.String COMMENT)
                   throws com.ibm.adtech.jastor.JastorException
Description copied from interface: utilityClass
Remove a 'COMMENT' property value. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeCOMMENT in interface utilityClass
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
utilityClass.COMMENTProperty

getCELLTYPE

public openControlledVocabulary getCELLTYPE()
                                     throws com.ibm.adtech.jastor.JastorException
Description copied from interface: bioSource
Gets the 'CELLTYPE' property value

Specified by:
getCELLTYPE in interface bioSource
Returns:
openControlledVocabulary
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
bioSource.CELLTYPEProperty

setCELLTYPE

public void setCELLTYPE(openControlledVocabulary CELLTYPE)
                 throws com.ibm.adtech.jastor.JastorException
Description copied from interface: bioSource
Sets the 'CELLTYPE' property value

Specified by:
setCELLTYPE in interface bioSource
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
bioSource.CELLTYPEProperty

setCELLTYPE

public openControlledVocabulary setCELLTYPE()
                                     throws com.ibm.adtech.jastor.JastorException
Description copied from interface: bioSource
Sets the 'CELLTYPE' property value to an anonymous node

Specified by:
setCELLTYPE in interface bioSource
Returns:
openControlledVocabulary, the created value
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
bioSource.CELLTYPEProperty

setCELLTYPE

public openControlledVocabulary setCELLTYPE(com.hp.hpl.jena.rdf.model.Resource resource)
                                     throws com.ibm.adtech.jastor.JastorException
Description copied from interface: bioSource
Sets the 'CELLTYPE' property value to the given resource, and add's rdf:type properties. This method is equivalent constructing a new instance of openControlledVocabulary with the factory. and calling setCELLTYPE(fr.curie.BiNoM.pathways.biopax.openControlledVocabulary CELLTYPE) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#openControlledVocabulary. That is, this method should not be used as a shortcut for creating new objects in the model.

Specified by:
setCELLTYPE in interface bioSource
Returns:
openControlledVocabulary, the newly created value
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
bioSource.CELLTYPEProperty

getTISSUE

public openControlledVocabulary getTISSUE()
                                   throws com.ibm.adtech.jastor.JastorException
Description copied from interface: bioSource
Gets the 'TISSUE' property value

Specified by:
getTISSUE in interface bioSource
Returns:
openControlledVocabulary
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
bioSource.TISSUEProperty

setTISSUE

public void setTISSUE(openControlledVocabulary TISSUE)
               throws com.ibm.adtech.jastor.JastorException
Description copied from interface: bioSource
Sets the 'TISSUE' property value

Specified by:
setTISSUE in interface bioSource
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
bioSource.TISSUEProperty

setTISSUE

public openControlledVocabulary setTISSUE()
                                   throws com.ibm.adtech.jastor.JastorException
Description copied from interface: bioSource
Sets the 'TISSUE' property value to an anonymous node

Specified by:
setTISSUE in interface bioSource
Returns:
openControlledVocabulary, the created value
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
bioSource.TISSUEProperty

setTISSUE

public openControlledVocabulary setTISSUE(com.hp.hpl.jena.rdf.model.Resource resource)
                                   throws com.ibm.adtech.jastor.JastorException
Description copied from interface: bioSource
Sets the 'TISSUE' property value to the given resource, and add's rdf:type properties. This method is equivalent constructing a new instance of openControlledVocabulary with the factory. and calling setTISSUE(fr.curie.BiNoM.pathways.biopax.openControlledVocabulary TISSUE) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#openControlledVocabulary. That is, this method should not be used as a shortcut for creating new objects in the model.

Specified by:
setTISSUE in interface bioSource
Returns:
openControlledVocabulary, the newly created value
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
bioSource.TISSUEProperty

getTAXON_DASH_XREF

public unificationXref getTAXON_DASH_XREF()
                                   throws com.ibm.adtech.jastor.JastorException
Description copied from interface: bioSource
Gets the 'TAXON_DASH_XREF' property value

Specified by:
getTAXON_DASH_XREF in interface bioSource
Returns:
unificationXref
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
bioSource.TAXON_DASH_XREFProperty

setTAXON_DASH_XREF

public void setTAXON_DASH_XREF(unificationXref TAXON_DASH_XREF)
                        throws com.ibm.adtech.jastor.JastorException
Description copied from interface: bioSource
Sets the 'TAXON_DASH_XREF' property value

Specified by:
setTAXON_DASH_XREF in interface bioSource
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
bioSource.TAXON_DASH_XREFProperty

setTAXON_DASH_XREF

public unificationXref setTAXON_DASH_XREF()
                                   throws com.ibm.adtech.jastor.JastorException
Description copied from interface: bioSource
Sets the 'TAXON_DASH_XREF' property value to an anonymous node

Specified by:
setTAXON_DASH_XREF in interface bioSource
Returns:
unificationXref, the created value
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
bioSource.TAXON_DASH_XREFProperty

setTAXON_DASH_XREF

public unificationXref setTAXON_DASH_XREF(com.hp.hpl.jena.rdf.model.Resource resource)
                                   throws com.ibm.adtech.jastor.JastorException
Description copied from interface: bioSource
Sets the 'TAXON_DASH_XREF' property value to the given resource, and add's rdf:type properties. This method is equivalent constructing a new instance of unificationXref with the factory. and calling setTAXON_DASH_XREF(fr.curie.BiNoM.pathways.biopax.unificationXref TAXON_DASH_XREF) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#unificationXref. That is, this method should not be used as a shortcut for creating new objects in the model.

Specified by:
setTAXON_DASH_XREF in interface bioSource
Returns:
unificationXref, the newly created value
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
bioSource.TAXON_DASH_XREFProperty

getNAME

public java.lang.String getNAME()
                         throws com.ibm.adtech.jastor.JastorException
Description copied from interface: bioSource
Gets the 'NAME' property value

Specified by:
getNAME in interface bioSource
Returns:
String
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
bioSource.NAMEProperty

setNAME

public void setNAME(java.lang.String NAME)
             throws com.ibm.adtech.jastor.JastorException
Description copied from interface: bioSource
Sets the 'NAME' property value

Specified by:
setNAME in interface bioSource
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
bioSource.NAMEProperty

registerListener

public void registerListener(com.ibm.adtech.jastor.ThingListener listener)
Specified by:
registerListener in interface com.ibm.adtech.jastor.Thing
Overrides:
registerListener in class com.ibm.adtech.jastor.ThingImpl

unregisterListener

public void unregisterListener(com.ibm.adtech.jastor.ThingListener listener)
Specified by:
unregisterListener in interface com.ibm.adtech.jastor.Thing
Overrides:
unregisterListener in class com.ibm.adtech.jastor.ThingImpl

addedStatement

public void addedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)
Specified by:
addedStatement in interface com.hp.hpl.jena.rdf.model.ModelChangedListener
Overrides:
addedStatement in class com.hp.hpl.jena.rdf.listeners.StatementListener

removedStatement

public void removedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)
Specified by:
removedStatement in interface com.hp.hpl.jena.rdf.model.ModelChangedListener
Overrides:
removedStatement in class com.hp.hpl.jena.rdf.listeners.StatementListener