fr.curie.BiNoM.pathways.biopax
Interface chemicalStructure

All Superinterfaces:

com.ibm.adtech.jastor.Thing, utilityClass

All Known Implementing Classes:

chemicalStructureImpl

public interface chemicalStructure
extends utilityClass, com.ibm.adtech.jastor.Thing

Interface for chemicalStructure ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.

(URI: http://www.biopax.org/release/biopax-level2.owl#chemicalStructure)

RDF Schema Standard Properties
comment : Definition: Describes a small molecule structure. Structure information is stored in the property STRUCTURE-DATA, in one of three formats: the CML format (see URL www.xml-cml.org), the SMILES format (see URL www.daylight.com/dayhtml/smiles/) or the InChI format (http://www.iupac.org/inchi/). The STRUCTURE-FORMAT property specifies which format is used. Comment: By virtue of the expressivity of CML, an instance of this class can also provide additional information about a small molecule, such as its chemical formula, names, and synonyms, if CML is used as the structure format. Examples: The following SMILES string, which describes the structure of glucose-6-phosphate: 'C(OP(=O)(O)O)[CH]1([CH](O)[CH](O)[CH](O)[CH](O)O1)'.^^http://www.w3.org/2001/XMLSchema#string

Field Summary

static com.hp.hpl.jena.rdf.model.Property	STRUCTURE_DASH_DATAProperty The Jena Property for STRUCTURE_DASH_DATA
static com.hp.hpl.jena.rdf.model.Property	STRUCTURE_DASH_FORMATProperty The Jena Property for STRUCTURE_DASH_FORMAT
static com.hp.hpl.jena.rdf.model.Resource	TYPE The rdf:type for this ontology class

Fields inherited from interface fr.curie.BiNoM.pathways.biopax.utilityClass

COMMENTProperty

Fields inherited from interface com.ibm.adtech.jastor.Thing

copyright

Method Summary

java.lang.String	getSTRUCTURE_DASH_DATA() Gets the 'STRUCTURE_DASH_DATA' property value
java.lang.String	getSTRUCTURE_DASH_FORMAT() Gets the 'STRUCTURE_DASH_FORMAT' property value
void	setSTRUCTURE_DASH_DATA(java.lang.String STRUCTURE_DASH_DATA) Sets the 'STRUCTURE_DASH_DATA' property value
void	setSTRUCTURE_DASH_FORMAT(java.lang.String STRUCTURE_DASH_FORMAT) Sets the 'STRUCTURE_DASH_FORMAT' property value

Methods inherited from interface fr.curie.BiNoM.pathways.biopax.utilityClass

addCOMMENT, getCOMMENT, removeCOMMENT

Methods inherited from interface com.ibm.adtech.jastor.Thing

clearCache, isRDFType, listStatements, model, registerListener, removeStatements, resource, unregisterListener, uri

Field Detail

TYPE

static final com.hp.hpl.jena.rdf.model.Resource TYPE

The rdf:type for this ontology class

STRUCTURE_DASH_DATAProperty

static final com.hp.hpl.jena.rdf.model.Property STRUCTURE_DASH_DATAProperty

The Jena Property for STRUCTURE_DASH_DATA

(URI: http://www.biopax.org/release/biopax-level2.owl#STRUCTURE-DATA)

RDF Schema Standard Properties
comment : This property holds a string of data defining chemical structure or other information, in either the CML or SMILES format, as specified in property Structure-Format. If, for example, the CML format is used, then the value of this property is a string containing the XML encoding of the CML data.^^http://www.w3.org/2001/XMLSchema#string

STRUCTURE_DASH_FORMATProperty

static final com.hp.hpl.jena.rdf.model.Property STRUCTURE_DASH_FORMATProperty

The Jena Property for STRUCTURE_DASH_FORMAT

(URI: http://www.biopax.org/release/biopax-level2.owl#STRUCTURE-FORMAT)

RDF Schema Standard Properties
comment : This property specifies which format is used to define chemical structure data.@en

Method Detail

getSTRUCTURE_DASH_DATA

java.lang.String getSTRUCTURE_DASH_DATA()
                                        throws com.ibm.adtech.jastor.JastorException

Gets the 'STRUCTURE_DASH_DATA' property value

Returns:

String

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

STRUCTURE_DASH_DATAProperty

setSTRUCTURE_DASH_DATA

void setSTRUCTURE_DASH_DATA(java.lang.String STRUCTURE_DASH_DATA)
                            throws com.ibm.adtech.jastor.JastorException

Sets the 'STRUCTURE_DASH_DATA' property value

Parameters:

{@link - java.lang.String}

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

STRUCTURE_DASH_DATAProperty

getSTRUCTURE_DASH_FORMAT

java.lang.String getSTRUCTURE_DASH_FORMAT()
                                          throws com.ibm.adtech.jastor.JastorException

Gets the 'STRUCTURE_DASH_FORMAT' property value

Returns:

String

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

STRUCTURE_DASH_FORMATProperty

setSTRUCTURE_DASH_FORMAT

void setSTRUCTURE_DASH_FORMAT(java.lang.String STRUCTURE_DASH_FORMAT)
                              throws com.ibm.adtech.jastor.JastorException

Sets the 'STRUCTURE_DASH_FORMAT' property value

Parameters:

{@link - java.lang.String}

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

STRUCTURE_DASH_FORMATProperty