fr.curie.BiNoM.pathways.biopax
Class complexImpl

java.lang.Object
  extended by com.hp.hpl.jena.rdf.listeners.StatementListener
      extended by com.ibm.adtech.jastor.ThingImpl
          extended by fr.curie.BiNoM.pathways.biopax.complexImpl
All Implemented Interfaces:
com.hp.hpl.jena.rdf.model.ModelChangedListener, com.ibm.adtech.jastor.Thing, complex, entity, physicalEntity

public class complexImpl
extends com.ibm.adtech.jastor.ThingImpl
implements complex

Implementation of complex Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.

(URI: http://www.biopax.org/release/biopax-level2.owl#complex)



Field Summary
 
Fields inherited from class com.ibm.adtech.jastor.ThingImpl
copyright
 
Fields inherited from interface fr.curie.BiNoM.pathways.biopax.complex
TYPE
 
Fields inherited from interface com.ibm.adtech.jastor.Thing
copyright
 
Method Summary
 void addAVAILABILITY(java.lang.String AVAILABILITY)
          Add a 'AVAILABILITY' property value
 void addCOMMENT(java.lang.String COMMENT)
          Add a 'COMMENT' property value
 physicalEntityParticipant addCOMPONENTS()
          Adds an anonymous value for the 'COMPONENTS' property
 void addCOMPONENTS(physicalEntityParticipant COMPONENTS)
          Adds a value for the 'COMPONENTS' property
 physicalEntityParticipant addCOMPONENTS(com.hp.hpl.jena.rdf.model.Resource resource)
          Adds a value for the 'COMPONENTS' property.
 dataSource addDATA_DASH_SOURCE()
          Adds an anonymous value for the 'DATA_DASH_SOURCE' property
 void addDATA_DASH_SOURCE(dataSource DATA_DASH_SOURCE)
          Adds a value for the 'DATA_DASH_SOURCE' property
 dataSource addDATA_DASH_SOURCE(com.hp.hpl.jena.rdf.model.Resource resource)
          Adds a value for the 'DATA_DASH_SOURCE' property.
 void addedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)
           
 bioSource addORGANISM()
          Adds an anonymous value for the 'ORGANISM' property
 void addORGANISM(bioSource ORGANISM)
          Adds a value for the 'ORGANISM' property
 bioSource addORGANISM(com.hp.hpl.jena.rdf.model.Resource resource)
          Adds a value for the 'ORGANISM' property.
 void addSYNONYMS(java.lang.String SYNONYMS)
          Add a 'SYNONYMS' property value
 xref addXREF()
          Adds an anonymous value for the 'XREF' property
 xref addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
          Adds a value for the 'XREF' property.
 void addXREF(xref XREF)
          Adds a value for the 'XREF' property
 void clearCache()
           
 java.util.Iterator getAVAILABILITY()
          Iterates through the 'AVAILABILITY' property values.
 java.util.Iterator getCOMMENT()
          Iterates through the 'COMMENT' property values.
 java.util.Iterator getCOMPONENTS()
          Get an Iterator the 'COMPONENTS' property values.
 java.util.Iterator getDATA_DASH_SOURCE()
          Get an Iterator the 'DATA_DASH_SOURCE' property values.
 java.lang.String getNAME()
          Gets the 'NAME' property value
 java.util.Iterator getORGANISM()
          Get an Iterator the 'ORGANISM' property values.
 java.lang.String getSHORT_DASH_NAME()
          Gets the 'SHORT_DASH_NAME' property value
 java.util.Iterator getSYNONYMS()
          Iterates through the 'SYNONYMS' property values.
 java.util.Iterator getXREF()
          Get an Iterator the 'XREF' property values.
 java.util.List listStatements()
           
 void registerListener(com.ibm.adtech.jastor.ThingListener listener)
           
 void removeAVAILABILITY(java.lang.String AVAILABILITY)
          Remove a 'AVAILABILITY' property value.
 void removeCOMMENT(java.lang.String COMMENT)
          Remove a 'COMMENT' property value.
 void removeCOMPONENTS(physicalEntityParticipant COMPONENTS)
          Removes a value for the 'COMPONENTS' property.
 void removeDATA_DASH_SOURCE(dataSource DATA_DASH_SOURCE)
          Removes a value for the 'DATA_DASH_SOURCE' property.
 void removedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)
           
 void removeORGANISM(bioSource ORGANISM)
          Removes a value for the 'ORGANISM' property.
 void removeSYNONYMS(java.lang.String SYNONYMS)
          Remove a 'SYNONYMS' property value.
 void removeXREF(xref XREF)
          Removes a value for the 'XREF' property.
 void setNAME(java.lang.String NAME)
          Sets the 'NAME' property value
 void setSHORT_DASH_NAME(java.lang.String SHORT_DASH_NAME)
          Sets the 'SHORT_DASH_NAME' property value
 void unregisterListener(com.ibm.adtech.jastor.ThingListener listener)
           
 
Methods inherited from class com.ibm.adtech.jastor.ThingImpl
equals, isRDFType, model, removeStatements, resource, toString, uri
 
Methods inherited from class com.hp.hpl.jena.rdf.listeners.StatementListener
addedStatements, addedStatements, addedStatements, addedStatements, notifyEvent, removedStatements, removedStatements, removedStatements, removedStatements
 
Methods inherited from class java.lang.Object
getClass, hashCode, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface com.ibm.adtech.jastor.Thing
isRDFType, model, removeStatements, resource, uri
 

Method Detail

listStatements

public java.util.List listStatements()
Specified by:
listStatements in interface com.ibm.adtech.jastor.Thing
Overrides:
listStatements in class com.ibm.adtech.jastor.ThingImpl

clearCache

public void clearCache()
Specified by:
clearCache in interface com.ibm.adtech.jastor.Thing
Overrides:
clearCache in class com.ibm.adtech.jastor.ThingImpl

getDATA_DASH_SOURCE

public java.util.Iterator getDATA_DASH_SOURCE()
                                       throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Get an Iterator the 'DATA_DASH_SOURCE' property values. This Iteartor may be used to remove all such values.

Specified by:
getDATA_DASH_SOURCE in interface entity
Returns:
Iterator of dataSource
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.DATA_DASH_SOURCEProperty

addDATA_DASH_SOURCE

public void addDATA_DASH_SOURCE(dataSource DATA_DASH_SOURCE)
                         throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Adds a value for the 'DATA_DASH_SOURCE' property

Specified by:
addDATA_DASH_SOURCE in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.DATA_DASH_SOURCEProperty

addDATA_DASH_SOURCE

public dataSource addDATA_DASH_SOURCE()
                               throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Adds an anonymous value for the 'DATA_DASH_SOURCE' property

Specified by:
addDATA_DASH_SOURCE in interface entity
Returns:
The anoymous dataSource created
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.DATA_DASH_SOURCEProperty

addDATA_DASH_SOURCE

public dataSource addDATA_DASH_SOURCE(com.hp.hpl.jena.rdf.model.Resource resource)
                               throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Adds a value for the 'DATA_DASH_SOURCE' property. This method is equivalent constructing a new instance of dataSource with the factory and calling addDATA_DASH_SOURCE(fr.curie.BiNoM.pathways.biopax.dataSource DATA_DASH_SOURCE) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#dataSource. That is, this method should not be used as a shortcut for creating new objects in the model.

Specified by:
addDATA_DASH_SOURCE in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.DATA_DASH_SOURCEProperty

removeDATA_DASH_SOURCE

public void removeDATA_DASH_SOURCE(dataSource DATA_DASH_SOURCE)
                            throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Removes a value for the 'DATA_DASH_SOURCE' property. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeDATA_DASH_SOURCE in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.DATA_DASH_SOURCEProperty

getAVAILABILITY

public java.util.Iterator getAVAILABILITY()
                                   throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Iterates through the 'AVAILABILITY' property values. This Iteartor may be used to remove all such values.

Specified by:
getAVAILABILITY in interface entity
Returns:
Iterator of String
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.AVAILABILITYProperty

addAVAILABILITY

public void addAVAILABILITY(java.lang.String AVAILABILITY)
                     throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Add a 'AVAILABILITY' property value

Specified by:
addAVAILABILITY in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.AVAILABILITYProperty

removeAVAILABILITY

public void removeAVAILABILITY(java.lang.String AVAILABILITY)
                        throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Remove a 'AVAILABILITY' property value. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeAVAILABILITY in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.AVAILABILITYProperty

getCOMMENT

public java.util.Iterator getCOMMENT()
                              throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Iterates through the 'COMMENT' property values. This Iteartor may be used to remove all such values.

Specified by:
getCOMMENT in interface entity
Returns:
Iterator of String
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.COMMENTProperty

addCOMMENT

public void addCOMMENT(java.lang.String COMMENT)
                throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Add a 'COMMENT' property value

Specified by:
addCOMMENT in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.COMMENTProperty

removeCOMMENT

public void removeCOMMENT(java.lang.String COMMENT)
                   throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Remove a 'COMMENT' property value. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeCOMMENT in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.COMMENTProperty

getSHORT_DASH_NAME

public java.lang.String getSHORT_DASH_NAME()
                                    throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Gets the 'SHORT_DASH_NAME' property value

Specified by:
getSHORT_DASH_NAME in interface entity
Returns:
String
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.SHORT_DASH_NAMEProperty

setSHORT_DASH_NAME

public void setSHORT_DASH_NAME(java.lang.String SHORT_DASH_NAME)
                        throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Sets the 'SHORT_DASH_NAME' property value

Specified by:
setSHORT_DASH_NAME in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.SHORT_DASH_NAMEProperty

getSYNONYMS

public java.util.Iterator getSYNONYMS()
                               throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Iterates through the 'SYNONYMS' property values. This Iteartor may be used to remove all such values.

Specified by:
getSYNONYMS in interface entity
Returns:
Iterator of String
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.SYNONYMSProperty

addSYNONYMS

public void addSYNONYMS(java.lang.String SYNONYMS)
                 throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Add a 'SYNONYMS' property value

Specified by:
addSYNONYMS in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.SYNONYMSProperty

removeSYNONYMS

public void removeSYNONYMS(java.lang.String SYNONYMS)
                    throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Remove a 'SYNONYMS' property value. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeSYNONYMS in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.SYNONYMSProperty

getNAME

public java.lang.String getNAME()
                         throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Gets the 'NAME' property value

Specified by:
getNAME in interface entity
Returns:
String
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.NAMEProperty

setNAME

public void setNAME(java.lang.String NAME)
             throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Sets the 'NAME' property value

Specified by:
setNAME in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.NAMEProperty

getXREF

public java.util.Iterator getXREF()
                           throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Get an Iterator the 'XREF' property values. This Iteartor may be used to remove all such values.

Specified by:
getXREF in interface entity
Returns:
Iterator of xref
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.XREFProperty

addXREF

public void addXREF(xref XREF)
             throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Adds a value for the 'XREF' property

Specified by:
addXREF in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.XREFProperty

addXREF

public xref addXREF()
             throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Adds an anonymous value for the 'XREF' property

Specified by:
addXREF in interface entity
Returns:
The anoymous xref created
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.XREFProperty

addXREF

public xref addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
             throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Adds a value for the 'XREF' property. This method is equivalent constructing a new instance of xref with the factory and calling addXREF(fr.curie.BiNoM.pathways.biopax.xref XREF) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#xref. That is, this method should not be used as a shortcut for creating new objects in the model.

Specified by:
addXREF in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.XREFProperty

removeXREF

public void removeXREF(xref XREF)
                throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Removes a value for the 'XREF' property. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeXREF in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.XREFProperty

getCOMPONENTS

public java.util.Iterator getCOMPONENTS()
                                 throws com.ibm.adtech.jastor.JastorException
Description copied from interface: complex
Get an Iterator the 'COMPONENTS' property values. This Iteartor may be used to remove all such values.

Specified by:
getCOMPONENTS in interface complex
Returns:
Iterator of physicalEntityParticipant
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
complex.COMPONENTSProperty

addCOMPONENTS

public void addCOMPONENTS(physicalEntityParticipant COMPONENTS)
                   throws com.ibm.adtech.jastor.JastorException
Description copied from interface: complex
Adds a value for the 'COMPONENTS' property

Specified by:
addCOMPONENTS in interface complex
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
complex.COMPONENTSProperty

addCOMPONENTS

public physicalEntityParticipant addCOMPONENTS()
                                        throws com.ibm.adtech.jastor.JastorException
Description copied from interface: complex
Adds an anonymous value for the 'COMPONENTS' property

Specified by:
addCOMPONENTS in interface complex
Returns:
The anoymous physicalEntityParticipant created
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
complex.COMPONENTSProperty

addCOMPONENTS

public physicalEntityParticipant addCOMPONENTS(com.hp.hpl.jena.rdf.model.Resource resource)
                                        throws com.ibm.adtech.jastor.JastorException
Description copied from interface: complex
Adds a value for the 'COMPONENTS' property. This method is equivalent constructing a new instance of physicalEntityParticipant with the factory and calling addCOMPONENTS(fr.curie.BiNoM.pathways.biopax.physicalEntityParticipant COMPONENTS) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#physicalEntityParticipant. That is, this method should not be used as a shortcut for creating new objects in the model.

Specified by:
addCOMPONENTS in interface complex
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
complex.COMPONENTSProperty

removeCOMPONENTS

public void removeCOMPONENTS(physicalEntityParticipant COMPONENTS)
                      throws com.ibm.adtech.jastor.JastorException
Description copied from interface: complex
Removes a value for the 'COMPONENTS' property. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeCOMPONENTS in interface complex
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
complex.COMPONENTSProperty

getORGANISM

public java.util.Iterator getORGANISM()
                               throws com.ibm.adtech.jastor.JastorException
Description copied from interface: complex
Get an Iterator the 'ORGANISM' property values. This Iteartor may be used to remove all such values.

Specified by:
getORGANISM in interface complex
Returns:
Iterator of bioSource
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
complex.ORGANISMProperty

addORGANISM

public void addORGANISM(bioSource ORGANISM)
                 throws com.ibm.adtech.jastor.JastorException
Description copied from interface: complex
Adds a value for the 'ORGANISM' property

Specified by:
addORGANISM in interface complex
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
complex.ORGANISMProperty

addORGANISM

public bioSource addORGANISM()
                      throws com.ibm.adtech.jastor.JastorException
Description copied from interface: complex
Adds an anonymous value for the 'ORGANISM' property

Specified by:
addORGANISM in interface complex
Returns:
The anoymous bioSource created
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
complex.ORGANISMProperty

addORGANISM

public bioSource addORGANISM(com.hp.hpl.jena.rdf.model.Resource resource)
                      throws com.ibm.adtech.jastor.JastorException
Description copied from interface: complex
Adds a value for the 'ORGANISM' property. This method is equivalent constructing a new instance of bioSource with the factory and calling addORGANISM(fr.curie.BiNoM.pathways.biopax.bioSource ORGANISM) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#bioSource. That is, this method should not be used as a shortcut for creating new objects in the model.

Specified by:
addORGANISM in interface complex
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
complex.ORGANISMProperty

removeORGANISM

public void removeORGANISM(bioSource ORGANISM)
                    throws com.ibm.adtech.jastor.JastorException
Description copied from interface: complex
Removes a value for the 'ORGANISM' property. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeORGANISM in interface complex
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
complex.ORGANISMProperty

registerListener

public void registerListener(com.ibm.adtech.jastor.ThingListener listener)
Specified by:
registerListener in interface com.ibm.adtech.jastor.Thing
Overrides:
registerListener in class com.ibm.adtech.jastor.ThingImpl

unregisterListener

public void unregisterListener(com.ibm.adtech.jastor.ThingListener listener)
Specified by:
unregisterListener in interface com.ibm.adtech.jastor.Thing
Overrides:
unregisterListener in class com.ibm.adtech.jastor.ThingImpl

addedStatement

public void addedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)
Specified by:
addedStatement in interface com.hp.hpl.jena.rdf.model.ModelChangedListener
Overrides:
addedStatement in class com.hp.hpl.jena.rdf.listeners.StatementListener

removedStatement

public void removedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)
Specified by:
removedStatement in interface com.hp.hpl.jena.rdf.model.ModelChangedListener
Overrides:
removedStatement in class com.hp.hpl.jena.rdf.listeners.StatementListener