fr.curie.BiNoM.pathways.biopax
Interface dataSource

All Superinterfaces:

externalReferenceUtilityClass, com.ibm.adtech.jastor.Thing, utilityClass

All Known Implementing Classes:

dataSourceImpl

public interface dataSource
extends externalReferenceUtilityClass, com.ibm.adtech.jastor.Thing

Interface for dataSource ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.

(URI: http://www.biopax.org/release/biopax-level2.owl#dataSource)

RDF Schema Standard Properties
comment : Definition: The direct source of this data. This does not store the trail of sources from the generation of the data to this point, only the last known source, such as a database. The XREF property may contain a publicationXref referencing a publication describing the data source (e.g. a database publication). A unificationXref may be used e.g. when pointing to an entry in a database of databases describing this database. Examples: A database or person name.^^http://www.w3.org/2001/XMLSchema#string

Field Summary

static com.hp.hpl.jena.rdf.model.Property	NAMEProperty The Jena Property for NAME
static com.hp.hpl.jena.rdf.model.Resource	TYPE The rdf:type for this ontology class
static com.hp.hpl.jena.rdf.model.Property	XREFProperty The Jena Property for XREF

Fields inherited from interface fr.curie.BiNoM.pathways.biopax.utilityClass

COMMENTProperty

Fields inherited from interface com.ibm.adtech.jastor.Thing

copyright

Method Summary

void	addNAME(java.lang.String NAME) Add a 'NAME' property value
publicationXref	addXREF_aspublicationXref() Adds an anonymous value for the 'XREF' property
publicationXref	addXREF_aspublicationXref(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'XREF' property.
unificationXref	addXREF_asunificationXref() Adds an anonymous value for the 'XREF' property
unificationXref	addXREF_asunificationXref(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'XREF' property.
xref	addXREF() Adds an anonymous value for the 'XREF' property
void	addXREF(publicationXref XREF) Adds a value for the 'XREF' property
xref	addXREF(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'XREF' property.
void	addXREF(unificationXref XREF) Adds a value for the 'XREF' property
void	addXREF(xref XREF) Adds a value for the 'XREF' property
java.util.Iterator	getNAME() Iterates through the 'NAME' property values.
java.util.Iterator	getXREF_aspublicationXref() Get an Iterator the 'XREF' property values.
java.util.Iterator	getXREF_asunificationXref() Get an Iterator the 'XREF' property values.
java.util.Iterator	getXREF() Get an Iterator the 'XREF' property values.
void	removeNAME(java.lang.String NAME) Remove a 'NAME' property value.
void	removeXREF(publicationXref XREF) Removes a value for the 'XREF' property.
void	removeXREF(unificationXref XREF) Removes a value for the 'XREF' property.
void	removeXREF(xref XREF) Removes a value for the 'XREF' property.

Methods inherited from interface fr.curie.BiNoM.pathways.biopax.utilityClass

addCOMMENT, getCOMMENT, removeCOMMENT

Methods inherited from interface com.ibm.adtech.jastor.Thing

clearCache, isRDFType, listStatements, model, registerListener, removeStatements, resource, unregisterListener, uri

Field Detail

TYPE

static final com.hp.hpl.jena.rdf.model.Resource TYPE

The rdf:type for this ontology class

NAMEProperty

static final com.hp.hpl.jena.rdf.model.Property NAMEProperty

The Jena Property for NAME

(URI: http://www.biopax.org/release/biopax-level2.owl#NAME)

RDF Schema Standard Properties
comment : The preferred full name for this entity.@en

XREFProperty

static final com.hp.hpl.jena.rdf.model.Property XREFProperty

The Jena Property for XREF

(URI: http://www.biopax.org/release/biopax-level2.owl#XREF)

RDF Schema Standard Properties
comment : Values of this property define external cross-references from this entity to entities in external databases.@en

Method Detail

getNAME

java.util.Iterator getNAME()
                           throws com.ibm.adtech.jastor.JastorException

Iterates through the 'NAME' property values. This Iteartor may be used to remove all such values.

Returns:

Iterator of String

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

NAMEProperty

addNAME

void addNAME(java.lang.String NAME)
             throws com.ibm.adtech.jastor.JastorException

Add a 'NAME' property value

Parameters:

{@link - java.lang.String}, the value to add

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

NAMEProperty

removeNAME

void removeNAME(java.lang.String NAME)
                throws com.ibm.adtech.jastor.JastorException

Remove a 'NAME' property value. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Parameters:

{@link - java.lang.String}, the value to remove

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

NAMEProperty

getXREF

java.util.Iterator getXREF()
                           throws com.ibm.adtech.jastor.JastorException

Get an Iterator the 'XREF' property values. This Iteartor may be used to remove all such values.

Returns:

Iterator of xref

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

XREFProperty

addXREF

void addXREF(xref XREF)
             throws com.ibm.adtech.jastor.JastorException

Adds a value for the 'XREF' property

Parameters:

The - xref to add

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

XREFProperty

addXREF

xref addXREF()
             throws com.ibm.adtech.jastor.JastorException

Adds an anonymous value for the 'XREF' property

Returns:

The anoymous xref created

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

XREFProperty

addXREF

xref addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
             throws com.ibm.adtech.jastor.JastorException

Adds a value for the 'XREF' property. This method is equivalent constructing a new instance of xref with the factory and calling addXREF(fr.curie.BiNoM.pathways.biopax.xref XREF) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#xref. That is, this method should not be used as a shortcut for creating new objects in the model.

Parameters:

The - om.hp.hpl.jena.rdf.model.Resource to add

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

XREFProperty

removeXREF

void removeXREF(xref XREF)
                throws com.ibm.adtech.jastor.JastorException

Removes a value for the 'XREF' property. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Parameters:

The - xref to remove

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

XREFProperty

getXREF_aspublicationXref

java.util.Iterator getXREF_aspublicationXref()
                                             throws com.ibm.adtech.jastor.JastorException

Get an Iterator the 'XREF' property values. This Iteartor may be used to remove all such values.

Returns:

Iterator of publicationXref

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

XREFProperty

addXREF

void addXREF(publicationXref XREF)
             throws com.ibm.adtech.jastor.JastorException

Adds a value for the 'XREF' property

Parameters:

The - publicationXref to add

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

XREFProperty

addXREF_aspublicationXref

publicationXref addXREF_aspublicationXref()
                                          throws com.ibm.adtech.jastor.JastorException

Adds an anonymous value for the 'XREF' property

Returns:

The anoymous publicationXref created

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

XREFProperty

addXREF_aspublicationXref

publicationXref addXREF_aspublicationXref(com.hp.hpl.jena.rdf.model.Resource resource)
                                          throws com.ibm.adtech.jastor.JastorException

Adds a value for the 'XREF' property. This method is equivalent constructing a new instance of publicationXref with the factory and calling addXREF(fr.curie.BiNoM.pathways.biopax.publicationXref XREF) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#publicationXref. That is, this method should not be used as a shortcut for creating new objects in the model.

Parameters:

The - om.hp.hpl.jena.rdf.model.Resource to add

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

XREFProperty

removeXREF

void removeXREF(publicationXref XREF)
                throws com.ibm.adtech.jastor.JastorException

Removes a value for the 'XREF' property. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Parameters:

The - publicationXref to remove

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

XREFProperty

getXREF_asunificationXref

java.util.Iterator getXREF_asunificationXref()
                                             throws com.ibm.adtech.jastor.JastorException

Get an Iterator the 'XREF' property values. This Iteartor may be used to remove all such values.

Returns:

Iterator of unificationXref

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

XREFProperty

addXREF

void addXREF(unificationXref XREF)
             throws com.ibm.adtech.jastor.JastorException

Adds a value for the 'XREF' property

Parameters:

The - unificationXref to add

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

XREFProperty

addXREF_asunificationXref

unificationXref addXREF_asunificationXref()
                                          throws com.ibm.adtech.jastor.JastorException

Adds an anonymous value for the 'XREF' property

Returns:

The anoymous unificationXref created

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

XREFProperty

addXREF_asunificationXref

unificationXref addXREF_asunificationXref(com.hp.hpl.jena.rdf.model.Resource resource)
                                          throws com.ibm.adtech.jastor.JastorException

Adds a value for the 'XREF' property. This method is equivalent constructing a new instance of unificationXref with the factory and calling addXREF(fr.curie.BiNoM.pathways.biopax.unificationXref XREF) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#unificationXref. That is, this method should not be used as a shortcut for creating new objects in the model.

Parameters:

The - om.hp.hpl.jena.rdf.model.Resource to add

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

XREFProperty

removeXREF

void removeXREF(unificationXref XREF)
                throws com.ibm.adtech.jastor.JastorException

Removes a value for the 'XREF' property. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Parameters:

The - unificationXref to remove

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

XREFProperty