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fr.curie.BiNoM.pathways.biopax
Interface deltaGprimeO

All Superinterfaces:
com.ibm.adtech.jastor.Thing, utilityClass
All Known Implementing Classes:
deltaGprimeOImpl
public interface deltaGprimeO
extends utilityClass, com.ibm.adtech.jastor.Thing

Interface for deltaGprimeO ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.

(URI: http://www.biopax.org/release/biopax-level2.owl#deltaGprimeO)


RDF Schema Standard Properties
comment : Definition: For biochemical reactions, this property refers to the standard transformed Gibbs energy change for a reaction written in terms of biochemical reactants (sums of species), delta-G'o. delta-G'o = -RT lnK' and delta-G'o = delta-H'o - T delta-S'o delta-G'o has units of kJ/mol. Like K', it is a function of temperature (T), ionic strength (I), pH, and pMg (pMg = -log10[Mg2+]). Therefore, these quantities must be specified, and values for DELTA-G for biochemical reactions are represented as 5-tuples of the form (delta-G'o T I pH pMg). This property may have multiple values, representing different measurements for delta-G'o obtained under the different experimental conditions listed in the 5-tuple. (This definition from EcoCyc)^^http://www.w3.org/2001/XMLSchema#string


Field Summary
static com.hp.hpl.jena.rdf.model.Property DELTA_DASH_G_DASH_PRIME_DASH_OProperty
          The Jena Property for DELTA_DASH_G_DASH_PRIME_DASH_O
static com.hp.hpl.jena.rdf.model.Property IONIC_DASH_STRENGTHProperty
          The Jena Property for IONIC_DASH_STRENGTH
static com.hp.hpl.jena.rdf.model.Property PHProperty
          The Jena Property for PH
static com.hp.hpl.jena.rdf.model.Property PMGProperty
          The Jena Property for PMG
static com.hp.hpl.jena.rdf.model.Property TEMPERATUREProperty
          The Jena Property for TEMPERATURE
static com.hp.hpl.jena.rdf.model.Resource TYPE
          The rdf:type for this ontology class
 
Fields inherited from interface fr.curie.BiNoM.pathways.biopax.utilityClass
COMMENTProperty
 
Fields inherited from interface com.ibm.adtech.jastor.Thing
copyright
 
Method Summary
 void addIONIC_DASH_STRENGTH(java.lang.Float IONIC_DASH_STRENGTH)
          Add a 'IONIC_DASH_STRENGTH' property value
 void addPH(java.lang.Float PH)
          Add a 'PH' property value
 void addPMG(java.lang.Float PMG)
          Add a 'PMG' property value
 void addTEMPERATURE(java.lang.Float TEMPERATURE)
          Add a 'TEMPERATURE' property value
 java.lang.Float getDELTA_DASH_G_DASH_PRIME_DASH_O()
          Gets the 'DELTA_DASH_G_DASH_PRIME_DASH_O' property value
 java.util.Iterator getIONIC_DASH_STRENGTH()
          Iterates through the 'IONIC_DASH_STRENGTH' property values.
 java.util.Iterator getPH()
          Iterates through the 'PH' property values.
 java.util.Iterator getPMG()
          Iterates through the 'PMG' property values.
 java.util.Iterator getTEMPERATURE()
          Iterates through the 'TEMPERATURE' property values.
 void removeIONIC_DASH_STRENGTH(java.lang.Float IONIC_DASH_STRENGTH)
          Remove a 'IONIC_DASH_STRENGTH' property value.
 void removePH(java.lang.Float PH)
          Remove a 'PH' property value.
 void removePMG(java.lang.Float PMG)
          Remove a 'PMG' property value.
 void removeTEMPERATURE(java.lang.Float TEMPERATURE)
          Remove a 'TEMPERATURE' property value.
 void setDELTA_DASH_G_DASH_PRIME_DASH_O(java.lang.Float DELTA_DASH_G_DASH_PRIME_DASH_O)
          Sets the 'DELTA_DASH_G_DASH_PRIME_DASH_O' property value
 
Methods inherited from interface fr.curie.BiNoM.pathways.biopax.utilityClass
addCOMMENT, getCOMMENT, removeCOMMENT
 
Methods inherited from interface com.ibm.adtech.jastor.Thing
clearCache, isRDFType, listStatements, model, registerListener, removeStatements, resource, unregisterListener, uri
 

Field Detail

TYPE

static final com.hp.hpl.jena.rdf.model.Resource TYPE
The rdf:type for this ontology class

DELTA_DASH_G_DASH_PRIME_DASH_OProperty

static final com.hp.hpl.jena.rdf.model.Property DELTA_DASH_G_DASH_PRIME_DASH_OProperty
The Jena Property for DELTA_DASH_G_DASH_PRIME_DASH_O

(URI: http://www.biopax.org/release/biopax-level2.owl#DELTA-G-PRIME-O)



RDF Schema Standard Properties
comment : For biochemical reactions, this property refers to the standard transformed Gibbs energy change for a reaction written in terms of biochemical reactants (sums of species), delta-G'o. delta-G'o = -RT lnK' and delta-G'o = delta-H'o - T delta-S'o delta-G'o has units of kJ/mol. Like K', it is a function of temperature (T), ionic strength (I), pH, and pMg (pMg = -log10[Mg2+]). Therefore, these quantities must be specified, and values for DELTA-G for biochemical reactions are represented as 5-tuples of the form (delta-G'o T I pH pMg). (This definition from EcoCyc)^^http://www.w3.org/2001/XMLSchema#string

TEMPERATUREProperty

static final com.hp.hpl.jena.rdf.model.Property TEMPERATUREProperty
The Jena Property for TEMPERATURE

(URI: http://www.biopax.org/release/biopax-level2.owl#TEMPERATURE)



RDF Schema Standard Properties
comment : Temperature in Celsius^^http://www.w3.org/2001/XMLSchema#string

PHProperty

static final com.hp.hpl.jena.rdf.model.Property PHProperty
The Jena Property for PH

(URI: http://www.biopax.org/release/biopax-level2.owl#PH)



RDF Schema Standard Properties
comment : A measure of acidity and alkalinity of a solution that is a number on a scale on which a value of 7 represents neutrality and lower numbers indicate increasing acidity and higher numbers increasing alkalinity and on which each unit of change represents a tenfold change in acidity or alkalinity and that is the negative logarithm of the effective hydrogen-ion concentration or hydrogen-ion activity in gram equivalents per liter of the solution. (Definition from Merriam-Webster Dictionary)^^http://www.w3.org/2001/XMLSchema#string

IONIC_DASH_STRENGTHProperty

static final com.hp.hpl.jena.rdf.model.Property IONIC_DASH_STRENGTHProperty
The Jena Property for IONIC_DASH_STRENGTH

(URI: http://www.biopax.org/release/biopax-level2.owl#IONIC-STRENGTH)



RDF Schema Standard Properties
comment : The ionic strength is defined as half of the total sum of the concentration (ci) of every ionic species (i) in the solution times the square of its charge (zi). For example, the ionic strength of a 0.1 M solution of CaCl2 is 0.5 x (0.1 x 22 + 0.2 x 12) = 0.3 M (Definition from http://www.lsbu.ac.uk/biology/enztech/ph.html)^^http://www.w3.org/2001/XMLSchema#string

PMGProperty

static final com.hp.hpl.jena.rdf.model.Property PMGProperty
The Jena Property for PMG

(URI: http://www.biopax.org/release/biopax-level2.owl#PMG)



RDF Schema Standard Properties
comment : A measure of the concentration of magnesium (Mg) in solution. (pMg = -log10[Mg2+])^^http://www.w3.org/2001/XMLSchema#string

Method Detail

getDELTA_DASH_G_DASH_PRIME_DASH_O

java.lang.Float getDELTA_DASH_G_DASH_PRIME_DASH_O()
                                                  throws com.ibm.adtech.jastor.JastorException
Gets the 'DELTA_DASH_G_DASH_PRIME_DASH_O' property value

Returns:
Float
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
DELTA_DASH_G_DASH_PRIME_DASH_OProperty

setDELTA_DASH_G_DASH_PRIME_DASH_O

void setDELTA_DASH_G_DASH_PRIME_DASH_O(java.lang.Float DELTA_DASH_G_DASH_PRIME_DASH_O)
                                       throws com.ibm.adtech.jastor.JastorException
Sets the 'DELTA_DASH_G_DASH_PRIME_DASH_O' property value

Parameters:
{@link - java.lang.Float}
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
DELTA_DASH_G_DASH_PRIME_DASH_OProperty

getTEMPERATURE

java.util.Iterator getTEMPERATURE()
                                  throws com.ibm.adtech.jastor.JastorException
Iterates through the 'TEMPERATURE' property values. This Iteartor may be used to remove all such values.

Returns:
Iterator of Float
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
TEMPERATUREProperty

addTEMPERATURE

void addTEMPERATURE(java.lang.Float TEMPERATURE)
                    throws com.ibm.adtech.jastor.JastorException
Add a 'TEMPERATURE' property value

Parameters:
{@link - java.lang.Float}, the value to add
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
TEMPERATUREProperty

removeTEMPERATURE

void removeTEMPERATURE(java.lang.Float TEMPERATURE)
                       throws com.ibm.adtech.jastor.JastorException
Remove a 'TEMPERATURE' property value. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Parameters:
{@link - java.lang.Float}, the value to remove
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
TEMPERATUREProperty

getPH

java.util.Iterator getPH()
                         throws com.ibm.adtech.jastor.JastorException
Iterates through the 'PH' property values. This Iteartor may be used to remove all such values.

Returns:
Iterator of Float
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
PHProperty

addPH

void addPH(java.lang.Float PH)
           throws com.ibm.adtech.jastor.JastorException
Add a 'PH' property value

Parameters:
{@link - java.lang.Float}, the value to add
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
PHProperty

removePH

void removePH(java.lang.Float PH)
              throws com.ibm.adtech.jastor.JastorException
Remove a 'PH' property value. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Parameters:
{@link - java.lang.Float}, the value to remove
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
PHProperty

getIONIC_DASH_STRENGTH

java.util.Iterator getIONIC_DASH_STRENGTH()
                                          throws com.ibm.adtech.jastor.JastorException
Iterates through the 'IONIC_DASH_STRENGTH' property values. This Iteartor may be used to remove all such values.

Returns:
Iterator of Float
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
IONIC_DASH_STRENGTHProperty

addIONIC_DASH_STRENGTH

void addIONIC_DASH_STRENGTH(java.lang.Float IONIC_DASH_STRENGTH)
                            throws com.ibm.adtech.jastor.JastorException
Add a 'IONIC_DASH_STRENGTH' property value

Parameters:
{@link - java.lang.Float}, the value to add
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
IONIC_DASH_STRENGTHProperty

removeIONIC_DASH_STRENGTH

void removeIONIC_DASH_STRENGTH(java.lang.Float IONIC_DASH_STRENGTH)
                               throws com.ibm.adtech.jastor.JastorException
Remove a 'IONIC_DASH_STRENGTH' property value. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Parameters:
{@link - java.lang.Float}, the value to remove
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
IONIC_DASH_STRENGTHProperty

getPMG

java.util.Iterator getPMG()
                          throws com.ibm.adtech.jastor.JastorException
Iterates through the 'PMG' property values. This Iteartor may be used to remove all such values.

Returns:
Iterator of Float
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
PMGProperty

addPMG

void addPMG(java.lang.Float PMG)
            throws com.ibm.adtech.jastor.JastorException
Add a 'PMG' property value

Parameters:
{@link - java.lang.Float}, the value to add
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
PMGProperty

removePMG

void removePMG(java.lang.Float PMG)
               throws com.ibm.adtech.jastor.JastorException
Remove a 'PMG' property value. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Parameters:
{@link - java.lang.Float}, the value to remove
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
PMGProperty
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