fr.curie.BiNoM.pathways.biopax
Interface experimentalForm

All Superinterfaces:

com.ibm.adtech.jastor.Thing, utilityClass

All Known Implementing Classes:

experimentalFormImpl

public interface experimentalForm
extends utilityClass, com.ibm.adtech.jastor.Thing

Interface for experimentalForm ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.

(URI: http://www.biopax.org/release/biopax-level2.owl#experimentalForm)

RDF Schema Standard Properties
comment : Definition: The form of a physical entity in a particular experiment, as it may be modified for purposes of experimental design. Examples: A His-tagged protein in a binding assay. A protein can be tagged by multiple tags, so can have more than 1 experimental form type terms^^http://www.w3.org/2001/XMLSchema#string

Field Summary

static com.hp.hpl.jena.rdf.model.Property	EXPERIMENTAL_DASH_FORM_DASH_TYPEProperty The Jena Property for EXPERIMENTAL_DASH_FORM_DASH_TYPE
static com.hp.hpl.jena.rdf.model.Property	PARTICIPANTProperty The Jena Property for PARTICIPANT
static com.hp.hpl.jena.rdf.model.Resource	TYPE The rdf:type for this ontology class

Fields inherited from interface fr.curie.BiNoM.pathways.biopax.utilityClass

COMMENTProperty

Fields inherited from interface com.ibm.adtech.jastor.Thing

copyright

Method Summary

openControlledVocabulary	addEXPERIMENTAL_DASH_FORM_DASH_TYPE() Adds an anonymous value for the 'EXPERIMENTAL_DASH_FORM_DASH_TYPE' property
void	addEXPERIMENTAL_DASH_FORM_DASH_TYPE(openControlledVocabulary EXPERIMENTAL_DASH_FORM_DASH_TYPE) Adds a value for the 'EXPERIMENTAL_DASH_FORM_DASH_TYPE' property
openControlledVocabulary	addEXPERIMENTAL_DASH_FORM_DASH_TYPE(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'EXPERIMENTAL_DASH_FORM_DASH_TYPE' property.
java.util.Iterator	getEXPERIMENTAL_DASH_FORM_DASH_TYPE() Get an Iterator the 'EXPERIMENTAL_DASH_FORM_DASH_TYPE' property values.
physicalEntityParticipant	getPARTICIPANT() Gets the 'PARTICIPANT' property value
void	removeEXPERIMENTAL_DASH_FORM_DASH_TYPE(openControlledVocabulary EXPERIMENTAL_DASH_FORM_DASH_TYPE) Removes a value for the 'EXPERIMENTAL_DASH_FORM_DASH_TYPE' property.
physicalEntityParticipant	setPARTICIPANT() Sets the 'PARTICIPANT' property value to an anonymous node
void	setPARTICIPANT(physicalEntityParticipant PARTICIPANT) Sets the 'PARTICIPANT' property value
physicalEntityParticipant	setPARTICIPANT(com.hp.hpl.jena.rdf.model.Resource resource) Sets the 'PARTICIPANT' property value to the given resource, and add's rdf:type properties.

Methods inherited from interface fr.curie.BiNoM.pathways.biopax.utilityClass

addCOMMENT, getCOMMENT, removeCOMMENT

Methods inherited from interface com.ibm.adtech.jastor.Thing

clearCache, isRDFType, listStatements, model, registerListener, removeStatements, resource, unregisterListener, uri

Field Detail

TYPE

static final com.hp.hpl.jena.rdf.model.Resource TYPE

The rdf:type for this ontology class

PARTICIPANTProperty

static final com.hp.hpl.jena.rdf.model.Property PARTICIPANTProperty

The Jena Property for PARTICIPANT

(URI: http://www.biopax.org/release/biopax-level2.owl#PARTICIPANT)

RDF Schema Standard Properties
comment : The participant that has the experimental form being described.^^http://www.w3.org/2001/XMLSchema#string

EXPERIMENTAL_DASH_FORM_DASH_TYPEProperty

static final com.hp.hpl.jena.rdf.model.Property EXPERIMENTAL_DASH_FORM_DASH_TYPEProperty

The Jena Property for EXPERIMENTAL_DASH_FORM_DASH_TYPE

(URI: http://www.biopax.org/release/biopax-level2.owl#EXPERIMENTAL-FORM-TYPE)

RDF Schema Standard Properties
comment : Descriptor of this experimental form from a controlled vocabulary.^^http://www.w3.org/2001/XMLSchema#string

Method Detail

getPARTICIPANT

physicalEntityParticipant getPARTICIPANT()
                                         throws com.ibm.adtech.jastor.JastorException

Gets the 'PARTICIPANT' property value

Returns:

physicalEntityParticipant

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

PARTICIPANTProperty

setPARTICIPANT

void setPARTICIPANT(physicalEntityParticipant PARTICIPANT)
                    throws com.ibm.adtech.jastor.JastorException

Sets the 'PARTICIPANT' property value

Parameters:

{@link - fr.curie.BiNoM.pathways.biopax.physicalEntityParticipant}

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

PARTICIPANTProperty

setPARTICIPANT

physicalEntityParticipant setPARTICIPANT()
                                         throws com.ibm.adtech.jastor.JastorException

Sets the 'PARTICIPANT' property value to an anonymous node

Returns:

physicalEntityParticipant, the created value

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

PARTICIPANTProperty

setPARTICIPANT

physicalEntityParticipant setPARTICIPANT(com.hp.hpl.jena.rdf.model.Resource resource)
                                         throws com.ibm.adtech.jastor.JastorException

Sets the 'PARTICIPANT' property value to the given resource, and add's rdf:type properties. This method is equivalent constructing a new instance of physicalEntityParticipant with the factory. and calling setPARTICIPANT(fr.curie.BiNoM.pathways.biopax.physicalEntityParticipant PARTICIPANT) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#physicalEntityParticipant. That is, this method should not be used as a shortcut for creating new objects in the model.

Parameters:

{@link - com.hp.hpl.jena.rdf.model.Resource} must not be be null.

Returns:

physicalEntityParticipant, the newly created value

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

PARTICIPANTProperty

getEXPERIMENTAL_DASH_FORM_DASH_TYPE

java.util.Iterator getEXPERIMENTAL_DASH_FORM_DASH_TYPE()
                                                       throws com.ibm.adtech.jastor.JastorException

Get an Iterator the 'EXPERIMENTAL_DASH_FORM_DASH_TYPE' property values. This Iteartor may be used to remove all such values.

Returns:

Iterator of openControlledVocabulary

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

EXPERIMENTAL_DASH_FORM_DASH_TYPEProperty

addEXPERIMENTAL_DASH_FORM_DASH_TYPE

void addEXPERIMENTAL_DASH_FORM_DASH_TYPE(openControlledVocabulary EXPERIMENTAL_DASH_FORM_DASH_TYPE)
                                         throws com.ibm.adtech.jastor.JastorException

Adds a value for the 'EXPERIMENTAL_DASH_FORM_DASH_TYPE' property

Parameters:

The - openControlledVocabulary to add

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

EXPERIMENTAL_DASH_FORM_DASH_TYPEProperty

addEXPERIMENTAL_DASH_FORM_DASH_TYPE

openControlledVocabulary addEXPERIMENTAL_DASH_FORM_DASH_TYPE()
                                                             throws com.ibm.adtech.jastor.JastorException

Adds an anonymous value for the 'EXPERIMENTAL_DASH_FORM_DASH_TYPE' property

Returns:

The anoymous openControlledVocabulary created

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

EXPERIMENTAL_DASH_FORM_DASH_TYPEProperty

addEXPERIMENTAL_DASH_FORM_DASH_TYPE

openControlledVocabulary addEXPERIMENTAL_DASH_FORM_DASH_TYPE(com.hp.hpl.jena.rdf.model.Resource resource)
                                                             throws com.ibm.adtech.jastor.JastorException

Adds a value for the 'EXPERIMENTAL_DASH_FORM_DASH_TYPE' property. This method is equivalent constructing a new instance of openControlledVocabulary with the factory and calling addEXPERIMENTAL_DASH_FORM_DASH_TYPE(fr.curie.BiNoM.pathways.biopax.openControlledVocabulary EXPERIMENTAL_DASH_FORM_DASH_TYPE) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#openControlledVocabulary. That is, this method should not be used as a shortcut for creating new objects in the model.

Parameters:

The - om.hp.hpl.jena.rdf.model.Resource to add

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

EXPERIMENTAL_DASH_FORM_DASH_TYPEProperty

removeEXPERIMENTAL_DASH_FORM_DASH_TYPE

void removeEXPERIMENTAL_DASH_FORM_DASH_TYPE(openControlledVocabulary EXPERIMENTAL_DASH_FORM_DASH_TYPE)
                                            throws com.ibm.adtech.jastor.JastorException

Removes a value for the 'EXPERIMENTAL_DASH_FORM_DASH_TYPE' property. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Parameters:

The - openControlledVocabulary to remove

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

EXPERIMENTAL_DASH_FORM_DASH_TYPEProperty