fr.curie.BiNoM.pathways.biopax
Interface publicationXref

All Superinterfaces:

externalReferenceUtilityClass, com.ibm.adtech.jastor.Thing, utilityClass, xref

All Known Implementing Classes:

publicationXrefImpl

public interface publicationXref
extends xref, com.ibm.adtech.jastor.Thing

Interface for publicationXref ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.

(URI: http://www.biopax.org/release/biopax-level2.owl#publicationXref)

RDF Schema Standard Properties
comment : Definition: An xref that defines a reference to a publication such as a book, journal article, web page, or software manual. The reference may or may not be in a database, although references to PubMed are preferred when possible. The publication should make a direct reference to the instance it is attached to. Comment: Publication xrefs should make use of PubMed IDs wherever possible. The DB property of an xref to an entry in PubMed should use the string "PubMed" and not "MEDLINE". Examples: PubMed:10234245^^http://www.w3.org/2001/XMLSchema#string

Field Summary

static com.hp.hpl.jena.rdf.model.Property	AUTHORSProperty The Jena Property for AUTHORS
static com.hp.hpl.jena.rdf.model.Property	SOURCEProperty The Jena Property for SOURCE
static com.hp.hpl.jena.rdf.model.Property	TITLEProperty The Jena Property for TITLE
static com.hp.hpl.jena.rdf.model.Resource	TYPE The rdf:type for this ontology class
static com.hp.hpl.jena.rdf.model.Property	URLProperty The Jena Property for URL
static com.hp.hpl.jena.rdf.model.Property	YEARProperty The Jena Property for YEAR

Fields inherited from interface fr.curie.BiNoM.pathways.biopax.xref

DB_DASH_VERSIONProperty, DBProperty, ID_DASH_VERSIONProperty, IDProperty

Fields inherited from interface fr.curie.BiNoM.pathways.biopax.utilityClass

COMMENTProperty

Fields inherited from interface com.ibm.adtech.jastor.Thing

copyright

Method Summary

void	addAUTHORS(java.lang.String AUTHORS) Add a 'AUTHORS' property value
void	addSOURCE(java.lang.String SOURCE) Add a 'SOURCE' property value
void	addURL(java.lang.String URL) Add a 'URL' property value
java.util.Iterator	getAUTHORS() Iterates through the 'AUTHORS' property values.
java.util.Iterator	getSOURCE() Iterates through the 'SOURCE' property values.
java.lang.String	getTITLE() Gets the 'TITLE' property value
java.util.Iterator	getURL() Iterates through the 'URL' property values.
java.lang.Integer	getYEAR() Gets the 'YEAR' property value
void	removeAUTHORS(java.lang.String AUTHORS) Remove a 'AUTHORS' property value.
void	removeSOURCE(java.lang.String SOURCE) Remove a 'SOURCE' property value.
void	removeURL(java.lang.String URL) Remove a 'URL' property value.
void	setTITLE(java.lang.String TITLE) Sets the 'TITLE' property value
void	setYEAR(java.lang.Integer YEAR) Sets the 'YEAR' property value

Methods inherited from interface fr.curie.BiNoM.pathways.biopax.xref

getDB_DASH_VERSION, getDB, getID_DASH_VERSION, getID, setDB_DASH_VERSION, setDB, setID_DASH_VERSION, setID

Methods inherited from interface fr.curie.BiNoM.pathways.biopax.utilityClass

addCOMMENT, getCOMMENT, removeCOMMENT

Methods inherited from interface com.ibm.adtech.jastor.Thing

clearCache, isRDFType, listStatements, model, registerListener, removeStatements, resource, unregisterListener, uri

Field Detail

TYPE

static final com.hp.hpl.jena.rdf.model.Resource TYPE

The rdf:type for this ontology class

TITLEProperty

static final com.hp.hpl.jena.rdf.model.Property TITLEProperty

The Jena Property for TITLE

(URI: http://www.biopax.org/release/biopax-level2.owl#TITLE)

RDF Schema Standard Properties
comment : The title of the publication.@en

YEARProperty

static final com.hp.hpl.jena.rdf.model.Property YEARProperty

The Jena Property for YEAR

(URI: http://www.biopax.org/release/biopax-level2.owl#YEAR)

RDF Schema Standard Properties
comment : The year in which this publication was published.@en

URLProperty

static final com.hp.hpl.jena.rdf.model.Property URLProperty

The Jena Property for URL

(URI: http://www.biopax.org/release/biopax-level2.owl#URL)

RDF Schema Standard Properties
comment : The URL at which the publication can be found, if it is available through the Web.@en

SOURCEProperty

static final com.hp.hpl.jena.rdf.model.Property SOURCEProperty

The Jena Property for SOURCE

(URI: http://www.biopax.org/release/biopax-level2.owl#SOURCE)

RDF Schema Standard Properties
comment : The source in which the reference was published, such as: a book title, or a journal title and volume and pages.^^http://www.w3.org/2001/XMLSchema#string

AUTHORSProperty

static final com.hp.hpl.jena.rdf.model.Property AUTHORSProperty

The Jena Property for AUTHORS

(URI: http://www.biopax.org/release/biopax-level2.owl#AUTHORS)

RDF Schema Standard Properties
comment : The authors of this publication, one per property value.@en

Method Detail

getTITLE

java.lang.String getTITLE()
                          throws com.ibm.adtech.jastor.JastorException

Gets the 'TITLE' property value

Returns:

String

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

TITLEProperty

setTITLE

void setTITLE(java.lang.String TITLE)
              throws com.ibm.adtech.jastor.JastorException

Sets the 'TITLE' property value

Parameters:

{@link - java.lang.String}

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

TITLEProperty

getYEAR

java.lang.Integer getYEAR()
                          throws com.ibm.adtech.jastor.JastorException

Gets the 'YEAR' property value

Returns:

Integer

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

YEARProperty

setYEAR

void setYEAR(java.lang.Integer YEAR)
             throws com.ibm.adtech.jastor.JastorException

Sets the 'YEAR' property value

Parameters:

{@link - java.lang.Integer}

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

YEARProperty

getURL

java.util.Iterator getURL()
                          throws com.ibm.adtech.jastor.JastorException

Iterates through the 'URL' property values. This Iteartor may be used to remove all such values.

Returns:

Iterator of String

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

URLProperty

addURL

void addURL(java.lang.String URL)
            throws com.ibm.adtech.jastor.JastorException

Add a 'URL' property value

Parameters:

{@link - java.lang.String}, the value to add

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

URLProperty

removeURL

void removeURL(java.lang.String URL)
               throws com.ibm.adtech.jastor.JastorException

Remove a 'URL' property value. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Parameters:

{@link - java.lang.String}, the value to remove

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

URLProperty

getSOURCE

java.util.Iterator getSOURCE()
                             throws com.ibm.adtech.jastor.JastorException

Iterates through the 'SOURCE' property values. This Iteartor may be used to remove all such values.

Returns:

Iterator of String

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

SOURCEProperty

addSOURCE

void addSOURCE(java.lang.String SOURCE)
               throws com.ibm.adtech.jastor.JastorException

Add a 'SOURCE' property value

Parameters:

{@link - java.lang.String}, the value to add

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

SOURCEProperty

removeSOURCE

void removeSOURCE(java.lang.String SOURCE)
                  throws com.ibm.adtech.jastor.JastorException

Remove a 'SOURCE' property value. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Parameters:

{@link - java.lang.String}, the value to remove

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

SOURCEProperty

getAUTHORS

java.util.Iterator getAUTHORS()
                              throws com.ibm.adtech.jastor.JastorException

Iterates through the 'AUTHORS' property values. This Iteartor may be used to remove all such values.

Returns:

Iterator of String

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

AUTHORSProperty

addAUTHORS

void addAUTHORS(java.lang.String AUTHORS)
                throws com.ibm.adtech.jastor.JastorException

Add a 'AUTHORS' property value

Parameters:

{@link - java.lang.String}, the value to add

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

AUTHORSProperty

removeAUTHORS

void removeAUTHORS(java.lang.String AUTHORS)
                   throws com.ibm.adtech.jastor.JastorException

Remove a 'AUTHORS' property value. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Parameters:

{@link - java.lang.String}, the value to remove

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

AUTHORSProperty