fr.curie.BiNoM.pathways.biopax
Class sequenceFeatureImpl

java.lang.Object
  extended by com.hp.hpl.jena.rdf.listeners.StatementListener
      extended by com.ibm.adtech.jastor.ThingImpl
          extended by fr.curie.BiNoM.pathways.biopax.sequenceFeatureImpl
All Implemented Interfaces:
com.hp.hpl.jena.rdf.model.ModelChangedListener, com.ibm.adtech.jastor.Thing, sequenceFeature, utilityClass

public class sequenceFeatureImpl
extends com.ibm.adtech.jastor.ThingImpl
implements sequenceFeature

Implementation of sequenceFeature Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.

(URI: http://www.biopax.org/release/biopax-level2.owl#sequenceFeature)



Field Summary
 
Fields inherited from class com.ibm.adtech.jastor.ThingImpl
copyright
 
Fields inherited from interface fr.curie.BiNoM.pathways.biopax.sequenceFeature
TYPE
 
Fields inherited from interface com.ibm.adtech.jastor.Thing
copyright
 
Method Summary
 void addCOMMENT(java.lang.String COMMENT)
          Add a 'COMMENT' property value
 void addedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)
           
 sequenceLocation addFEATURE_DASH_LOCATION()
          Adds an anonymous value for the 'FEATURE_DASH_LOCATION' property
 sequenceLocation addFEATURE_DASH_LOCATION(com.hp.hpl.jena.rdf.model.Resource resource)
          Adds a value for the 'FEATURE_DASH_LOCATION' property.
 void addFEATURE_DASH_LOCATION(sequenceLocation FEATURE_DASH_LOCATION)
          Adds a value for the 'FEATURE_DASH_LOCATION' property
 void addSYNONYMS(java.lang.String SYNONYMS)
          Add a 'SYNONYMS' property value
 xref addXREF()
          Adds an anonymous value for the 'XREF' property
 xref addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
          Adds a value for the 'XREF' property.
 void addXREF(xref XREF)
          Adds a value for the 'XREF' property
 void clearCache()
           
 java.util.Iterator getCOMMENT()
          Iterates through the 'COMMENT' property values.
 java.util.Iterator getFEATURE_DASH_LOCATION()
          Get an Iterator the 'FEATURE_DASH_LOCATION' property values.
 openControlledVocabulary getFEATURE_DASH_TYPE()
          Gets the 'FEATURE_DASH_TYPE' property value
 java.lang.String getNAME()
          Gets the 'NAME' property value
 java.lang.String getSHORT_DASH_NAME()
          Gets the 'SHORT_DASH_NAME' property value
 java.util.Iterator getSYNONYMS()
          Iterates through the 'SYNONYMS' property values.
 java.util.Iterator getXREF()
          Get an Iterator the 'XREF' property values.
 java.util.List listStatements()
           
 void registerListener(com.ibm.adtech.jastor.ThingListener listener)
           
 void removeCOMMENT(java.lang.String COMMENT)
          Remove a 'COMMENT' property value.
 void removedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)
           
 void removeFEATURE_DASH_LOCATION(sequenceLocation FEATURE_DASH_LOCATION)
          Removes a value for the 'FEATURE_DASH_LOCATION' property.
 void removeSYNONYMS(java.lang.String SYNONYMS)
          Remove a 'SYNONYMS' property value.
 void removeXREF(xref XREF)
          Removes a value for the 'XREF' property.
 openControlledVocabulary setFEATURE_DASH_TYPE()
          Sets the 'FEATURE_DASH_TYPE' property value to an anonymous node
 void setFEATURE_DASH_TYPE(openControlledVocabulary FEATURE_DASH_TYPE)
          Sets the 'FEATURE_DASH_TYPE' property value
 openControlledVocabulary setFEATURE_DASH_TYPE(com.hp.hpl.jena.rdf.model.Resource resource)
          Sets the 'FEATURE_DASH_TYPE' property value to the given resource, and add's rdf:type properties.
 void setNAME(java.lang.String NAME)
          Sets the 'NAME' property value
 void setSHORT_DASH_NAME(java.lang.String SHORT_DASH_NAME)
          Sets the 'SHORT_DASH_NAME' property value
 void unregisterListener(com.ibm.adtech.jastor.ThingListener listener)
           
 
Methods inherited from class com.ibm.adtech.jastor.ThingImpl
equals, isRDFType, model, removeStatements, resource, toString, uri
 
Methods inherited from class com.hp.hpl.jena.rdf.listeners.StatementListener
addedStatements, addedStatements, addedStatements, addedStatements, notifyEvent, removedStatements, removedStatements, removedStatements, removedStatements
 
Methods inherited from class java.lang.Object
getClass, hashCode, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface com.ibm.adtech.jastor.Thing
isRDFType, model, removeStatements, resource, uri
 

Method Detail

listStatements

public java.util.List listStatements()
Specified by:
listStatements in interface com.ibm.adtech.jastor.Thing
Overrides:
listStatements in class com.ibm.adtech.jastor.ThingImpl

clearCache

public void clearCache()
Specified by:
clearCache in interface com.ibm.adtech.jastor.Thing
Overrides:
clearCache in class com.ibm.adtech.jastor.ThingImpl

getCOMMENT

public java.util.Iterator getCOMMENT()
                              throws com.ibm.adtech.jastor.JastorException
Description copied from interface: utilityClass
Iterates through the 'COMMENT' property values. This Iteartor may be used to remove all such values.

Specified by:
getCOMMENT in interface utilityClass
Returns:
Iterator of String
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
utilityClass.COMMENTProperty

addCOMMENT

public void addCOMMENT(java.lang.String COMMENT)
                throws com.ibm.adtech.jastor.JastorException
Description copied from interface: utilityClass
Add a 'COMMENT' property value

Specified by:
addCOMMENT in interface utilityClass
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
utilityClass.COMMENTProperty

removeCOMMENT

public void removeCOMMENT(java.lang.String COMMENT)
                   throws com.ibm.adtech.jastor.JastorException
Description copied from interface: utilityClass
Remove a 'COMMENT' property value. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeCOMMENT in interface utilityClass
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
utilityClass.COMMENTProperty

getFEATURE_DASH_TYPE

public openControlledVocabulary getFEATURE_DASH_TYPE()
                                              throws com.ibm.adtech.jastor.JastorException
Description copied from interface: sequenceFeature
Gets the 'FEATURE_DASH_TYPE' property value

Specified by:
getFEATURE_DASH_TYPE in interface sequenceFeature
Returns:
openControlledVocabulary
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
sequenceFeature.FEATURE_DASH_TYPEProperty

setFEATURE_DASH_TYPE

public void setFEATURE_DASH_TYPE(openControlledVocabulary FEATURE_DASH_TYPE)
                          throws com.ibm.adtech.jastor.JastorException
Description copied from interface: sequenceFeature
Sets the 'FEATURE_DASH_TYPE' property value

Specified by:
setFEATURE_DASH_TYPE in interface sequenceFeature
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
sequenceFeature.FEATURE_DASH_TYPEProperty

setFEATURE_DASH_TYPE

public openControlledVocabulary setFEATURE_DASH_TYPE()
                                              throws com.ibm.adtech.jastor.JastorException
Description copied from interface: sequenceFeature
Sets the 'FEATURE_DASH_TYPE' property value to an anonymous node

Specified by:
setFEATURE_DASH_TYPE in interface sequenceFeature
Returns:
openControlledVocabulary, the created value
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
sequenceFeature.FEATURE_DASH_TYPEProperty

setFEATURE_DASH_TYPE

public openControlledVocabulary setFEATURE_DASH_TYPE(com.hp.hpl.jena.rdf.model.Resource resource)
                                              throws com.ibm.adtech.jastor.JastorException
Description copied from interface: sequenceFeature
Sets the 'FEATURE_DASH_TYPE' property value to the given resource, and add's rdf:type properties. This method is equivalent constructing a new instance of openControlledVocabulary with the factory. and calling setFEATURE_DASH_TYPE(fr.curie.BiNoM.pathways.biopax.openControlledVocabulary FEATURE_DASH_TYPE) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#openControlledVocabulary. That is, this method should not be used as a shortcut for creating new objects in the model.

Specified by:
setFEATURE_DASH_TYPE in interface sequenceFeature
Returns:
openControlledVocabulary, the newly created value
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
sequenceFeature.FEATURE_DASH_TYPEProperty

getFEATURE_DASH_LOCATION

public java.util.Iterator getFEATURE_DASH_LOCATION()
                                            throws com.ibm.adtech.jastor.JastorException
Description copied from interface: sequenceFeature
Get an Iterator the 'FEATURE_DASH_LOCATION' property values. This Iteartor may be used to remove all such values.

Specified by:
getFEATURE_DASH_LOCATION in interface sequenceFeature
Returns:
Iterator of sequenceLocation
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
sequenceFeature.FEATURE_DASH_LOCATIONProperty

addFEATURE_DASH_LOCATION

public void addFEATURE_DASH_LOCATION(sequenceLocation FEATURE_DASH_LOCATION)
                              throws com.ibm.adtech.jastor.JastorException
Description copied from interface: sequenceFeature
Adds a value for the 'FEATURE_DASH_LOCATION' property

Specified by:
addFEATURE_DASH_LOCATION in interface sequenceFeature
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
sequenceFeature.FEATURE_DASH_LOCATIONProperty

addFEATURE_DASH_LOCATION

public sequenceLocation addFEATURE_DASH_LOCATION()
                                          throws com.ibm.adtech.jastor.JastorException
Description copied from interface: sequenceFeature
Adds an anonymous value for the 'FEATURE_DASH_LOCATION' property

Specified by:
addFEATURE_DASH_LOCATION in interface sequenceFeature
Returns:
The anoymous sequenceLocation created
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
sequenceFeature.FEATURE_DASH_LOCATIONProperty

addFEATURE_DASH_LOCATION

public sequenceLocation addFEATURE_DASH_LOCATION(com.hp.hpl.jena.rdf.model.Resource resource)
                                          throws com.ibm.adtech.jastor.JastorException
Description copied from interface: sequenceFeature
Adds a value for the 'FEATURE_DASH_LOCATION' property. This method is equivalent constructing a new instance of sequenceLocation with the factory and calling addFEATURE_DASH_LOCATION(fr.curie.BiNoM.pathways.biopax.sequenceLocation FEATURE_DASH_LOCATION) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#sequenceLocation. That is, this method should not be used as a shortcut for creating new objects in the model.

Specified by:
addFEATURE_DASH_LOCATION in interface sequenceFeature
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
sequenceFeature.FEATURE_DASH_LOCATIONProperty

removeFEATURE_DASH_LOCATION

public void removeFEATURE_DASH_LOCATION(sequenceLocation FEATURE_DASH_LOCATION)
                                 throws com.ibm.adtech.jastor.JastorException
Description copied from interface: sequenceFeature
Removes a value for the 'FEATURE_DASH_LOCATION' property. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeFEATURE_DASH_LOCATION in interface sequenceFeature
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
sequenceFeature.FEATURE_DASH_LOCATIONProperty

getSHORT_DASH_NAME

public java.lang.String getSHORT_DASH_NAME()
                                    throws com.ibm.adtech.jastor.JastorException
Description copied from interface: sequenceFeature
Gets the 'SHORT_DASH_NAME' property value

Specified by:
getSHORT_DASH_NAME in interface sequenceFeature
Returns:
String
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
sequenceFeature.SHORT_DASH_NAMEProperty

setSHORT_DASH_NAME

public void setSHORT_DASH_NAME(java.lang.String SHORT_DASH_NAME)
                        throws com.ibm.adtech.jastor.JastorException
Description copied from interface: sequenceFeature
Sets the 'SHORT_DASH_NAME' property value

Specified by:
setSHORT_DASH_NAME in interface sequenceFeature
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
sequenceFeature.SHORT_DASH_NAMEProperty

getSYNONYMS

public java.util.Iterator getSYNONYMS()
                               throws com.ibm.adtech.jastor.JastorException
Description copied from interface: sequenceFeature
Iterates through the 'SYNONYMS' property values. This Iteartor may be used to remove all such values.

Specified by:
getSYNONYMS in interface sequenceFeature
Returns:
Iterator of String
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
sequenceFeature.SYNONYMSProperty

addSYNONYMS

public void addSYNONYMS(java.lang.String SYNONYMS)
                 throws com.ibm.adtech.jastor.JastorException
Description copied from interface: sequenceFeature
Add a 'SYNONYMS' property value

Specified by:
addSYNONYMS in interface sequenceFeature
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
sequenceFeature.SYNONYMSProperty

removeSYNONYMS

public void removeSYNONYMS(java.lang.String SYNONYMS)
                    throws com.ibm.adtech.jastor.JastorException
Description copied from interface: sequenceFeature
Remove a 'SYNONYMS' property value. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeSYNONYMS in interface sequenceFeature
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
sequenceFeature.SYNONYMSProperty

getNAME

public java.lang.String getNAME()
                         throws com.ibm.adtech.jastor.JastorException
Description copied from interface: sequenceFeature
Gets the 'NAME' property value

Specified by:
getNAME in interface sequenceFeature
Returns:
String
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
sequenceFeature.NAMEProperty

setNAME

public void setNAME(java.lang.String NAME)
             throws com.ibm.adtech.jastor.JastorException
Description copied from interface: sequenceFeature
Sets the 'NAME' property value

Specified by:
setNAME in interface sequenceFeature
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
sequenceFeature.NAMEProperty

getXREF

public java.util.Iterator getXREF()
                           throws com.ibm.adtech.jastor.JastorException
Description copied from interface: sequenceFeature
Get an Iterator the 'XREF' property values. This Iteartor may be used to remove all such values.

Specified by:
getXREF in interface sequenceFeature
Returns:
Iterator of xref
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
sequenceFeature.XREFProperty

addXREF

public void addXREF(xref XREF)
             throws com.ibm.adtech.jastor.JastorException
Description copied from interface: sequenceFeature
Adds a value for the 'XREF' property

Specified by:
addXREF in interface sequenceFeature
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
sequenceFeature.XREFProperty

addXREF

public xref addXREF()
             throws com.ibm.adtech.jastor.JastorException
Description copied from interface: sequenceFeature
Adds an anonymous value for the 'XREF' property

Specified by:
addXREF in interface sequenceFeature
Returns:
The anoymous xref created
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
sequenceFeature.XREFProperty

addXREF

public xref addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
             throws com.ibm.adtech.jastor.JastorException
Description copied from interface: sequenceFeature
Adds a value for the 'XREF' property. This method is equivalent constructing a new instance of xref with the factory and calling addXREF(fr.curie.BiNoM.pathways.biopax.xref XREF) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#xref. That is, this method should not be used as a shortcut for creating new objects in the model.

Specified by:
addXREF in interface sequenceFeature
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
sequenceFeature.XREFProperty

removeXREF

public void removeXREF(xref XREF)
                throws com.ibm.adtech.jastor.JastorException
Description copied from interface: sequenceFeature
Removes a value for the 'XREF' property. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeXREF in interface sequenceFeature
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
sequenceFeature.XREFProperty

registerListener

public void registerListener(com.ibm.adtech.jastor.ThingListener listener)
Specified by:
registerListener in interface com.ibm.adtech.jastor.Thing
Overrides:
registerListener in class com.ibm.adtech.jastor.ThingImpl

unregisterListener

public void unregisterListener(com.ibm.adtech.jastor.ThingListener listener)
Specified by:
unregisterListener in interface com.ibm.adtech.jastor.Thing
Overrides:
unregisterListener in class com.ibm.adtech.jastor.ThingImpl

addedStatement

public void addedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)
Specified by:
addedStatement in interface com.hp.hpl.jena.rdf.model.ModelChangedListener
Overrides:
addedStatement in class com.hp.hpl.jena.rdf.listeners.StatementListener

removedStatement

public void removedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)
Specified by:
removedStatement in interface com.hp.hpl.jena.rdf.model.ModelChangedListener
Overrides:
removedStatement in class com.hp.hpl.jena.rdf.listeners.StatementListener