fr.curie.BiNoM.pathways.biopax
Interface sequenceSite

All Superinterfaces:

sequenceLocation, com.ibm.adtech.jastor.Thing, utilityClass

All Known Implementing Classes:

sequenceSiteImpl

public interface sequenceSite
extends sequenceLocation, com.ibm.adtech.jastor.Thing

Interface for sequenceSite ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.

(URI: http://www.biopax.org/release/biopax-level2.owl#sequenceSite)

RDF Schema Standard Properties
comment : Definition: Describes a site on a sequence, i.e. the position of a single nucleotide or amino acid.^^http://www.w3.org/2001/XMLSchema#string

Field Summary

static com.hp.hpl.jena.rdf.model.Property	POSITION_DASH_STATUSProperty The Jena Property for POSITION_DASH_STATUS
static com.hp.hpl.jena.rdf.model.Property	SEQUENCE_DASH_POSITIONProperty The Jena Property for SEQUENCE_DASH_POSITION
static com.hp.hpl.jena.rdf.model.Resource	TYPE The rdf:type for this ontology class

Fields inherited from interface fr.curie.BiNoM.pathways.biopax.utilityClass

COMMENTProperty

Fields inherited from interface com.ibm.adtech.jastor.Thing

copyright

Method Summary

java.lang.String	getPOSITION_DASH_STATUS() Gets the 'POSITION_DASH_STATUS' property value
com.hp.hpl.jena.datatypes.xsd.impl.XSDBaseNumericType	getSEQUENCE_DASH_POSITION() Gets the 'SEQUENCE_DASH_POSITION' property value
void	setPOSITION_DASH_STATUS(java.lang.String POSITION_DASH_STATUS) Sets the 'POSITION_DASH_STATUS' property value
void	setSEQUENCE_DASH_POSITION(com.hp.hpl.jena.datatypes.xsd.impl.XSDBaseNumericType SEQUENCE_DASH_POSITION) Sets the 'SEQUENCE_DASH_POSITION' property value

Methods inherited from interface fr.curie.BiNoM.pathways.biopax.utilityClass

addCOMMENT, getCOMMENT, removeCOMMENT

Methods inherited from interface com.ibm.adtech.jastor.Thing

clearCache, isRDFType, listStatements, model, registerListener, removeStatements, resource, unregisterListener, uri

Field Detail

TYPE

static final com.hp.hpl.jena.rdf.model.Resource TYPE

The rdf:type for this ontology class

POSITION_DASH_STATUSProperty

static final com.hp.hpl.jena.rdf.model.Property POSITION_DASH_STATUSProperty

The Jena Property for POSITION_DASH_STATUS

(URI: http://www.biopax.org/release/biopax-level2.owl#POSITION-STATUS)

RDF Schema Standard Properties
comment : The confidence status of the sequence position. This could be: EQUAL: The SEQUENCE-POSITION is known to be at the SEQUENCE-POSITION. GREATER-THAN: The site is greater than the SEQUENCE-POSITION. LESS-THAN: The site is less than the SEQUENCE-POSITION.^^http://www.w3.org/2001/XMLSchema#string

SEQUENCE_DASH_POSITIONProperty

static final com.hp.hpl.jena.rdf.model.Property SEQUENCE_DASH_POSITIONProperty

The Jena Property for SEQUENCE_DASH_POSITION

(URI: http://www.biopax.org/release/biopax-level2.owl#SEQUENCE-POSITION)

RDF Schema Standard Properties
comment : The integer listed gives the position. The first base or amino acid is position 1. In combination with the numeric value, the property 'POSITION-STATUS' allows to express fuzzy positions, e.g. 'less than 4'.^^http://www.w3.org/2001/XMLSchema#string

Method Detail

getPOSITION_DASH_STATUS

java.lang.String getPOSITION_DASH_STATUS()
                                         throws com.ibm.adtech.jastor.JastorException

Gets the 'POSITION_DASH_STATUS' property value

Returns:

String

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

POSITION_DASH_STATUSProperty

setPOSITION_DASH_STATUS

void setPOSITION_DASH_STATUS(java.lang.String POSITION_DASH_STATUS)
                             throws com.ibm.adtech.jastor.JastorException

Sets the 'POSITION_DASH_STATUS' property value

Parameters:

{@link - java.lang.String}

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

POSITION_DASH_STATUSProperty

getSEQUENCE_DASH_POSITION

com.hp.hpl.jena.datatypes.xsd.impl.XSDBaseNumericType getSEQUENCE_DASH_POSITION()
                                                                                throws com.ibm.adtech.jastor.JastorException

Gets the 'SEQUENCE_DASH_POSITION' property value

Returns:

XSDBaseNumericType

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

SEQUENCE_DASH_POSITIONProperty

setSEQUENCE_DASH_POSITION

void setSEQUENCE_DASH_POSITION(com.hp.hpl.jena.datatypes.xsd.impl.XSDBaseNumericType SEQUENCE_DASH_POSITION)
                               throws com.ibm.adtech.jastor.JastorException

Sets the 'SEQUENCE_DASH_POSITION' property value

Parameters:

{@link - com.hp.hpl.jena.datatypes.xsd.impl.XSDBaseNumericType}

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

SEQUENCE_DASH_POSITIONProperty