fr.curie.BiNoM.pathways.utils
Class BioPAXGraphMappingService

java.lang.Object
  fr.curie.BiNoM.pathways.utils.BioPAXGraphMappingService

public class BioPAXGraphMappingService
extends java.lang.Object

Service class performing creating BioPAX index

Field Summary

XGMML	globalGraph Output of the conversion
java.lang.String	projectName

Constructor Summary

BioPAXGraphMappingService()

Method Summary

edu.rpi.cs.xgmml.GraphDocument

mapBioPAXToGraph(BioPAX biopax) Creates BioPAX index as XGMML file from BioPAX object

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

globalGraph

public XGMML globalGraph

Output of the conversion

projectName

public java.lang.String projectName

Constructor Detail

BioPAXGraphMappingService

public BioPAXGraphMappingService()

Method Detail

mapBioPAXToGraph

public edu.rpi.cs.xgmml.GraphDocument mapBioPAXToGraph(BioPAX biopax)
                                                throws java.lang.Exception

Creates BioPAX index as XGMML file from BioPAX object

Parameters:

biopax -

Returns:

Throws:

java.lang.Exception