fr.curie.BiNoM.pathways.utils
Class BioPAXMerge

java.lang.Object
  fr.curie.BiNoM.pathways.utils.BioPAXMerge

public class BioPAXMerge
extends java.lang.Object

Utilities for merging BioPAX objects

Author:

Andrei Zinovyev

Field Summary

com.hp.hpl.jena.rdf.model.Model	mainfile The base BioPAX com.hp.hpl.jena.rdf.model.Model object
java.util.Vector	referenceFiles List of com.hp.hpl.jena.rdf.model.Model objects to merge with the base Model

Constructor Summary

BioPAXMerge()

Method Summary

void	mergeMainWithReferences() Merging of the base file with reference files.
void	printStatements() Prints all statements of the base Model
void	updateMainfileWithReferences() Updating base file with references.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

mainfile

public com.hp.hpl.jena.rdf.model.Model mainfile

The base BioPAX com.hp.hpl.jena.rdf.model.Model object

referenceFiles

public java.util.Vector referenceFiles

List of com.hp.hpl.jena.rdf.model.Model objects to merge with the base Model

Constructor Detail

BioPAXMerge

public BioPAXMerge()

Method Detail

mergeMainWithReferences

public void mergeMainWithReferences()
                             throws java.lang.Exception

Merging of the base file with reference files.

Throws:

java.lang.Exception

updateMainfileWithReferences

public void updateMainfileWithReferences()
                                  throws java.lang.Exception

Updating base file with references. Updating means that if an 'empty' thing is found in base then it is filled with information from the references

Throws:

java.lang.Exception

printStatements

public void printStatements()
                     throws java.lang.Exception

Prints all statements of the base Model

Throws:

java.lang.Exception