fr.curie.BiNoM.pathways.utils
Class insertMassActionLaws

java.lang.Object
  fr.curie.BiNoM.pathways.utils.insertMassActionLaws

public class insertMassActionLaws
extends java.lang.Object

Constructor Summary

insertMassActionLaws()

Method Summary

static java.lang.String	convertExprTreeToMathMLString(simtec.flux.symbolicmath.ExprTree t)
static simtec.flux.symbolicmath.ExprTree	generateMassActionLaw(org.sbml.sbml.level2.Reaction r, java.util.HashMap species)
static java.util.HashMap	getSpecies(org.sbml.sbml.level2.SbmlDocument sbmlDoc)
static void	insertMassActionLaws(org.sbml.sbml.level2.SbmlDocument sbmlDoc)
static void	main(java.lang.String[] args)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

insertMassActionLaws

public insertMassActionLaws()

Method Detail

main

public static void main(java.lang.String[] args)

insertMassActionLaws

public static void insertMassActionLaws(org.sbml.sbml.level2.SbmlDocument sbmlDoc)
                                 throws java.lang.Exception

Throws:

java.lang.Exception

generateMassActionLaw

public static simtec.flux.symbolicmath.ExprTree generateMassActionLaw(org.sbml.sbml.level2.Reaction r,
                                                                      java.util.HashMap species)
                                                               throws java.lang.Exception

Throws:

java.lang.Exception

getSpecies

public static java.util.HashMap getSpecies(org.sbml.sbml.level2.SbmlDocument sbmlDoc)
                                    throws java.lang.Exception

Throws:

java.lang.Exception

convertExprTreeToMathMLString

public static java.lang.String convertExprTreeToMathMLString(simtec.flux.symbolicmath.ExprTree t)
                                                      throws java.lang.Exception

Throws:

java.lang.Exception