Uses of Interface
fr.curie.BiNoM.pathways.biopax.pathwayStep

Packages that use pathwayStep

fr.curie.BiNoM.pathways	Set of converters for conversion of one systems biology format into an other.
fr.curie.BiNoM.pathways.biopax	Java mapping of BioPAX version 2 (generated by Jastor)

Uses of pathwayStep in fr.curie.BiNoM.pathways

Methods in fr.curie.BiNoM.pathways with parameters of type pathwayStep

edu.rpi.cs.xgmml.GraphicNode

BioPAXToCytoscapeConverter.addPathwayStepNode(edu.rpi.cs.xgmml.GraphicGraph grf, pathwayStep ps, java.util.HashMap pathways, java.util.HashMap interactions, java.util.HashMap pathwaySteps, java.util.HashMap nodes, java.util.HashMap edges, BioPAXToCytoscapeConverter.Option option) Adds a 'pathway step' node to Pathway Structure interface

Uses of pathwayStep in fr.curie.BiNoM.pathways.biopax

Classes in fr.curie.BiNoM.pathways.biopax that implement pathwayStep

class

pathwayStepImpl Implementation of pathwayStep Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.

Methods in fr.curie.BiNoM.pathways.biopax that return pathwayStep

pathwayStep	pathwayStepImpl.addNEXT_DASH_STEP()
pathwayStep	pathwayStep.addNEXT_DASH_STEP() Adds an anonymous value for the 'NEXT_DASH_STEP' property
pathwayStep	pathwayStepImpl.addNEXT_DASH_STEP(com.hp.hpl.jena.rdf.model.Resource resource)
pathwayStep	pathwayStep.addNEXT_DASH_STEP(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'NEXT_DASH_STEP' property.
pathwayStep	pathwayImpl.addPATHWAY_DASH_COMPONENTS_aspathwayStep()
pathwayStep	pathway.addPATHWAY_DASH_COMPONENTS_aspathwayStep() Adds an anonymous value for the 'PATHWAY_DASH_COMPONENTS' property
pathwayStep	pathwayImpl.addPATHWAY_DASH_COMPONENTS_aspathwayStep(com.hp.hpl.jena.rdf.model.Resource resource)
pathwayStep	pathway.addPATHWAY_DASH_COMPONENTS_aspathwayStep(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'PATHWAY_DASH_COMPONENTS' property.
static pathwayStep	biopax_DASH_level2_DOT_owlFactory.createpathwayStep(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of pathwayStep.
static pathwayStep	biopax_DASH_level2_DOT_owlFactory.createpathwayStep(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of pathwayStep.
static pathwayStep	biopax_DASH_level2_DOT_owlFactory.getpathwayStep(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of pathwayStep.
static pathwayStep	biopax_DASH_level2_DOT_owlFactory.getpathwayStep(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of pathwayStep.

Methods in fr.curie.BiNoM.pathways.biopax with parameters of type pathwayStep

void	pathwayStepImpl.addNEXT_DASH_STEP(pathwayStep NEXT_DASH_STEP)
void	pathwayStep.addNEXT_DASH_STEP(pathwayStep NEXT_DASH_STEP) Adds a value for the 'NEXT_DASH_STEP' property
void	pathwayImpl.addPATHWAY_DASH_COMPONENTS(pathwayStep PATHWAY_DASH_COMPONENTS)
void	pathway.addPATHWAY_DASH_COMPONENTS(pathwayStep PATHWAY_DASH_COMPONENTS) Adds a value for the 'PATHWAY_DASH_COMPONENTS' property
void	pathwayStepListener.COMMENTAdded(pathwayStep source, java.lang.String newValue) Called when a value of COMMENT has been added
void	pathwayStepListener.COMMENTRemoved(pathwayStep source, java.lang.String oldValue) Called when a value of COMMENT has been removed
void	pathwayStepListener.NEXT_DASH_STEPAdded(pathwayStep source, pathwayStep newValue) Called when a value of NEXT_DASH_STEP has been added
void	pathwayStepListener.NEXT_DASH_STEPRemoved(pathwayStep source, pathwayStep oldValue) Called when a value of NEXT_DASH_STEP has been removed
void	pathwayListener.PATHWAY_DASH_COMPONENTSAdded(pathway source, pathwayStep newValue) Called when a value of PATHWAY_DASH_COMPONENTS has been added
void	pathwayListener.PATHWAY_DASH_COMPONENTSRemoved(pathway source, pathwayStep oldValue) Called when a value of PATHWAY_DASH_COMPONENTS has been removed
void	pathwayStepImpl.removeNEXT_DASH_STEP(pathwayStep NEXT_DASH_STEP)
void	pathwayStep.removeNEXT_DASH_STEP(pathwayStep NEXT_DASH_STEP) Removes a value for the 'NEXT_DASH_STEP' property.
void	pathwayImpl.removePATHWAY_DASH_COMPONENTS(pathwayStep PATHWAY_DASH_COMPONENTS)
void	pathway.removePATHWAY_DASH_COMPONENTS(pathwayStep PATHWAY_DASH_COMPONENTS) Removes a value for the 'PATHWAY_DASH_COMPONENTS' property.
void	pathwayStepListener.STEP_DASH_INTERACTIONSAdded(pathwayStep source, interaction newValue) Called when a value of STEP_DASH_INTERACTIONS has been added
void	pathwayStepListener.STEP_DASH_INTERACTIONSAdded(pathwayStep source, pathway newValue) Called when a value of STEP_DASH_INTERACTIONS has been added
void	pathwayStepListener.STEP_DASH_INTERACTIONSRemoved(pathwayStep source, interaction oldValue) Called when a value of STEP_DASH_INTERACTIONS has been removed
void	pathwayStepListener.STEP_DASH_INTERACTIONSRemoved(pathwayStep source, pathway oldValue) Called when a value of STEP_DASH_INTERACTIONS has been removed