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fr.curie.BiNoM.pathways.biopax
Class biopax_DASH_level2_DOT_owlFactory

java.lang.Object
  extended by com.ibm.adtech.jastor.ThingFactory
      extended by fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory

public class biopax_DASH_level2_DOT_owlFactory
extends com.ibm.adtech.jastor.ThingFactory

Factory for instantiating objects for ontology classes in the biopax-level2.owl ontology. The get methods leave the model unchanged and return a Java view of the object in the model. The create methods may add certain baseline properties to the model such as rdf:type and any properties with hasValue restrictions.

(URI: http://www.biopax.org/release/biopax-level2.owl)


RDF Schema Standard Properties
comment : This is version 0.94 of the BioPAX Level 2 ontology. The goal of the BioPAX group is to develop a common exchange format for biological pathway data. More information is available at http://www.biopax.org. This ontology is freely available under the LGPL (http://www.gnu.org/copyleft/lesser.html).^^http://www.w3.org/2001/XMLSchema#string


Field Summary
 
Fields inherited from class com.ibm.adtech.jastor.ThingFactory
copyright
 
Constructor Summary
biopax_DASH_level2_DOT_owlFactory()
           
 
Method Summary
static biochemicalReaction createbiochemicalReaction(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of biochemicalReaction.
static biochemicalReaction createbiochemicalReaction(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of biochemicalReaction.
static bioSource createbioSource(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of bioSource.
static bioSource createbioSource(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of bioSource.
static catalysis createcatalysis(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of catalysis.
static catalysis createcatalysis(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of catalysis.
static chemicalStructure createchemicalStructure(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of chemicalStructure.
static chemicalStructure createchemicalStructure(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of chemicalStructure.
static complex createcomplex(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of complex.
static complex createcomplex(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of complex.
static complexAssembly createcomplexAssembly(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of complexAssembly.
static complexAssembly createcomplexAssembly(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of complexAssembly.
static confidence createconfidence(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of confidence.
static confidence createconfidence(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of confidence.
static control createcontrol(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of control.
static control createcontrol(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of control.
static conversion createconversion(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of conversion.
static conversion createconversion(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of conversion.
static dataSource createdataSource(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of dataSource.
static dataSource createdataSource(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of dataSource.
static deltaGprimeO createdeltaGprimeO(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of deltaGprimeO.
static deltaGprimeO createdeltaGprimeO(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of deltaGprimeO.
static dna createdna(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of dna.
static dna createdna(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of dna.
static entity createentity(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of entity.
static entity createentity(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of entity.
static evidence createevidence(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of evidence.
static evidence createevidence(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of evidence.
static experimentalForm createexperimentalForm(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of experimentalForm.
static experimentalForm createexperimentalForm(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of experimentalForm.
static externalReferenceUtilityClass createexternalReferenceUtilityClass(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of externalReferenceUtilityClass.
static externalReferenceUtilityClass createexternalReferenceUtilityClass(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of externalReferenceUtilityClass.
static interaction createinteraction(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of interaction.
static interaction createinteraction(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of interaction.
static kPrime createkPrime(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of kPrime.
static kPrime createkPrime(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of kPrime.
static modulation createmodulation(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of modulation.
static modulation createmodulation(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of modulation.
static openControlledVocabulary createopenControlledVocabulary(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of openControlledVocabulary.
static openControlledVocabulary createopenControlledVocabulary(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of openControlledVocabulary.
static pathway createpathway(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of pathway.
static pathway createpathway(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of pathway.
static pathwayStep createpathwayStep(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of pathwayStep.
static pathwayStep createpathwayStep(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of pathwayStep.
static physicalEntity createphysicalEntity(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of physicalEntity.
static physicalEntity createphysicalEntity(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of physicalEntity.
static physicalEntityParticipant createphysicalEntityParticipant(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of physicalEntityParticipant.
static physicalEntityParticipant createphysicalEntityParticipant(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of physicalEntityParticipant.
static physicalInteraction createphysicalInteraction(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of physicalInteraction.
static physicalInteraction createphysicalInteraction(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of physicalInteraction.
static protein createprotein(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of protein.
static protein createprotein(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of protein.
static publicationXref createpublicationXref(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of publicationXref.
static publicationXref createpublicationXref(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of publicationXref.
static relationshipXref createrelationshipXref(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of relationshipXref.
static relationshipXref createrelationshipXref(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of relationshipXref.
static rna createrna(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of rna.
static rna createrna(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of rna.
static sequenceFeature createsequenceFeature(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of sequenceFeature.
static sequenceFeature createsequenceFeature(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of sequenceFeature.
static sequenceInterval createsequenceInterval(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of sequenceInterval.
static sequenceInterval createsequenceInterval(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of sequenceInterval.
static sequenceLocation createsequenceLocation(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of sequenceLocation.
static sequenceLocation createsequenceLocation(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of sequenceLocation.
static sequenceParticipant createsequenceParticipant(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of sequenceParticipant.
static sequenceParticipant createsequenceParticipant(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of sequenceParticipant.
static sequenceSite createsequenceSite(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of sequenceSite.
static sequenceSite createsequenceSite(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of sequenceSite.
static smallMolecule createsmallMolecule(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of smallMolecule.
static smallMolecule createsmallMolecule(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of smallMolecule.
static transport createtransport(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of transport.
static transport createtransport(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of transport.
static transportWithBiochemicalReaction createtransportWithBiochemicalReaction(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of transportWithBiochemicalReaction.
static transportWithBiochemicalReaction createtransportWithBiochemicalReaction(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of transportWithBiochemicalReaction.
static unificationXref createunificationXref(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of unificationXref.
static unificationXref createunificationXref(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of unificationXref.
static utilityClass createutilityClass(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of utilityClass.
static utilityClass createutilityClass(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of utilityClass.
static xref createxref(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of xref.
static xref createxref(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of xref.
static java.util.List getAllbiochemicalReaction(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of biochemicalReaction for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#biochemicalReaction
static java.util.List getAllbioSource(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of bioSource for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#bioSource
static java.util.List getAllcatalysis(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of catalysis for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#catalysis
static java.util.List getAllchemicalStructure(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of chemicalStructure for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#chemicalStructure
static java.util.List getAllcomplex(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of complex for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#complex
static java.util.List getAllcomplexAssembly(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of complexAssembly for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#complexAssembly
static java.util.List getAllconfidence(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of confidence for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#confidence
static java.util.List getAllcontrol(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of control for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#control
static java.util.List getAllconversion(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of conversion for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#conversion
static java.util.List getAlldataSource(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of dataSource for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#dataSource
static java.util.List getAlldeltaGprimeO(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of deltaGprimeO for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#deltaGprimeO
static java.util.List getAlldna(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of dna for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#dna
static java.util.List getAllentity(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of entity for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#entity
static java.util.List getAllevidence(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of evidence for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#evidence
static java.util.List getAllexperimentalForm(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of experimentalForm for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#experimentalForm
static java.util.List getAllexternalReferenceUtilityClass(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of externalReferenceUtilityClass for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#externalReferenceUtilityClass
static java.util.List getAllinteraction(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of interaction for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#interaction
static java.util.List getAllkPrime(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of kPrime for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#kPrime
static java.util.List getAllmodulation(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of modulation for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#modulation
static java.util.List getAllopenControlledVocabulary(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of openControlledVocabulary for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#openControlledVocabulary
static java.util.List getAllpathway(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of pathway for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#pathway
static java.util.List getAllpathwayStep(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of pathwayStep for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#pathwayStep
static java.util.List getAllphysicalEntity(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of physicalEntity for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#physicalEntity
static java.util.List getAllphysicalEntityParticipant(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of physicalEntityParticipant for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#physicalEntityParticipant
static java.util.List getAllphysicalInteraction(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of physicalInteraction for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#physicalInteraction
static java.util.List getAllprotein(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of protein for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#protein
static java.util.List getAllpublicationXref(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of publicationXref for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#publicationXref
static java.util.List getAllrelationshipXref(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of relationshipXref for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#relationshipXref
static java.util.List getAllrna(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of rna for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#rna
static java.util.List getAllsequenceFeature(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of sequenceFeature for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#sequenceFeature
static java.util.List getAllsequenceInterval(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of sequenceInterval for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#sequenceInterval
static java.util.List getAllsequenceLocation(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of sequenceLocation for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#sequenceLocation
static java.util.List getAllsequenceParticipant(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of sequenceParticipant for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#sequenceParticipant
static java.util.List getAllsequenceSite(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of sequenceSite for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#sequenceSite
static java.util.List getAllsmallMolecule(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of smallMolecule for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#smallMolecule
static java.util.List getAlltransport(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of transport for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#transport
static java.util.List getAlltransportWithBiochemicalReaction(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of transportWithBiochemicalReaction for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#transportWithBiochemicalReaction
static java.util.List getAllunificationXref(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of unificationXref for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#unificationXref
static java.util.List getAllutilityClass(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of utilityClass for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#utilityClass
static java.util.List getAllxref(com.hp.hpl.jena.rdf.model.Model model)
          Return an instance of xref for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#xref
static biochemicalReaction getbiochemicalReaction(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of biochemicalReaction.
static biochemicalReaction getbiochemicalReaction(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of biochemicalReaction.
static bioSource getbioSource(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of bioSource.
static bioSource getbioSource(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of bioSource.
static catalysis getcatalysis(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of catalysis.
static catalysis getcatalysis(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of catalysis.
static chemicalStructure getchemicalStructure(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of chemicalStructure.
static chemicalStructure getchemicalStructure(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of chemicalStructure.
static complex getcomplex(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of complex.
static complex getcomplex(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of complex.
static complexAssembly getcomplexAssembly(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of complexAssembly.
static complexAssembly getcomplexAssembly(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of complexAssembly.
static confidence getconfidence(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of confidence.
static confidence getconfidence(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of confidence.
static control getcontrol(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of control.
static control getcontrol(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of control.
static conversion getconversion(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of conversion.
static conversion getconversion(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of conversion.
static dataSource getdataSource(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of dataSource.
static dataSource getdataSource(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of dataSource.
static deltaGprimeO getdeltaGprimeO(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of deltaGprimeO.
static deltaGprimeO getdeltaGprimeO(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of deltaGprimeO.
static dna getdna(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of dna.
static dna getdna(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of dna.
static entity getentity(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of entity.
static entity getentity(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of entity.
static evidence getevidence(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of evidence.
static evidence getevidence(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of evidence.
static experimentalForm getexperimentalForm(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of experimentalForm.
static experimentalForm getexperimentalForm(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of experimentalForm.
static externalReferenceUtilityClass getexternalReferenceUtilityClass(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of externalReferenceUtilityClass.
static externalReferenceUtilityClass getexternalReferenceUtilityClass(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of externalReferenceUtilityClass.
static interaction getinteraction(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of interaction.
static interaction getinteraction(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of interaction.
static kPrime getkPrime(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of kPrime.
static kPrime getkPrime(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of kPrime.
static modulation getmodulation(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of modulation.
static modulation getmodulation(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of modulation.
static openControlledVocabulary getopenControlledVocabulary(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of openControlledVocabulary.
static openControlledVocabulary getopenControlledVocabulary(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of openControlledVocabulary.
static pathway getpathway(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of pathway.
static pathway getpathway(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of pathway.
static pathwayStep getpathwayStep(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of pathwayStep.
static pathwayStep getpathwayStep(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of pathwayStep.
static physicalEntity getphysicalEntity(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of physicalEntity.
static physicalEntity getphysicalEntity(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of physicalEntity.
static physicalEntityParticipant getphysicalEntityParticipant(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of physicalEntityParticipant.
static physicalEntityParticipant getphysicalEntityParticipant(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of physicalEntityParticipant.
static physicalInteraction getphysicalInteraction(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of physicalInteraction.
static physicalInteraction getphysicalInteraction(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of physicalInteraction.
static protein getprotein(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of protein.
static protein getprotein(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of protein.
static publicationXref getpublicationXref(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of publicationXref.
static publicationXref getpublicationXref(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of publicationXref.
static relationshipXref getrelationshipXref(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of relationshipXref.
static relationshipXref getrelationshipXref(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of relationshipXref.
static rna getrna(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of rna.
static rna getrna(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of rna.
static sequenceFeature getsequenceFeature(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of sequenceFeature.
static sequenceFeature getsequenceFeature(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of sequenceFeature.
static sequenceInterval getsequenceInterval(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of sequenceInterval.
static sequenceInterval getsequenceInterval(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of sequenceInterval.
static sequenceLocation getsequenceLocation(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of sequenceLocation.
static sequenceLocation getsequenceLocation(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of sequenceLocation.
static sequenceParticipant getsequenceParticipant(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of sequenceParticipant.
static sequenceParticipant getsequenceParticipant(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of sequenceParticipant.
static sequenceSite getsequenceSite(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of sequenceSite.
static sequenceSite getsequenceSite(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of sequenceSite.
static smallMolecule getsmallMolecule(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of smallMolecule.
static smallMolecule getsmallMolecule(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of smallMolecule.
static com.ibm.adtech.jastor.Thing getThing(com.hp.hpl.jena.rdf.model.Resource res, com.hp.hpl.jena.rdf.model.Model model)
          Returns an instance of an interface for the given Resource.
static com.ibm.adtech.jastor.Thing getThing(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Returns an instance of an interface for the given Resource URI.
static transport gettransport(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of transport.
static transport gettransport(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of transport.
static transportWithBiochemicalReaction gettransportWithBiochemicalReaction(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of transportWithBiochemicalReaction.
static transportWithBiochemicalReaction gettransportWithBiochemicalReaction(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of transportWithBiochemicalReaction.
static unificationXref getunificationXref(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of unificationXref.
static unificationXref getunificationXref(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of unificationXref.
static utilityClass getutilityClass(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of utilityClass.
static utilityClass getutilityClass(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of utilityClass.
static xref getxref(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of xref.
static xref getxref(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of xref.
static java.util.List listCompatibleInterfaces(com.hp.hpl.jena.rdf.model.Resource type)
          Return a list of compatible interfaces for the given type.
 
Methods inherited from class com.ibm.adtech.jastor.ThingFactory
clearCache, clearCaches, createThing, createThing, registerThing
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

biopax_DASH_level2_DOT_owlFactory

public biopax_DASH_level2_DOT_owlFactory()
Method Detail

createcontrol

public static control createcontrol(com.hp.hpl.jena.rdf.model.Resource resource,
                                    com.hp.hpl.jena.rdf.model.Model model)
                             throws com.ibm.adtech.jastor.JastorException
Create a new instance of control. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the control
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createcontrol

public static control createcontrol(java.lang.String uri,
                                    com.hp.hpl.jena.rdf.model.Model model)
                             throws com.ibm.adtech.jastor.JastorException
Create a new instance of control. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the control
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getcontrol

public static control getcontrol(java.lang.String uri,
                                 com.hp.hpl.jena.rdf.model.Model model)
                          throws com.ibm.adtech.jastor.JastorException
Create a new instance of control. Leaves the model unchanged.

Parameters:
uri - The uri of the control
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getcontrol

public static control getcontrol(com.hp.hpl.jena.rdf.model.Resource resource,
                                 com.hp.hpl.jena.rdf.model.Model model)
                          throws com.ibm.adtech.jastor.JastorException
Create a new instance of control. Leaves the model unchanged.

Parameters:
resource - The resource of the control
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllcontrol

public static java.util.List getAllcontrol(com.hp.hpl.jena.rdf.model.Model model)
                                    throws com.ibm.adtech.jastor.JastorException
Return an instance of control for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#control

Parameters:
model - the Jena Model
Returns:
a List of control
Throws:
com.ibm.adtech.jastor.JastorException

createconfidence

public static confidence createconfidence(com.hp.hpl.jena.rdf.model.Resource resource,
                                          com.hp.hpl.jena.rdf.model.Model model)
                                   throws com.ibm.adtech.jastor.JastorException
Create a new instance of confidence. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the confidence
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createconfidence

public static confidence createconfidence(java.lang.String uri,
                                          com.hp.hpl.jena.rdf.model.Model model)
                                   throws com.ibm.adtech.jastor.JastorException
Create a new instance of confidence. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the confidence
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getconfidence

public static confidence getconfidence(java.lang.String uri,
                                       com.hp.hpl.jena.rdf.model.Model model)
                                throws com.ibm.adtech.jastor.JastorException
Create a new instance of confidence. Leaves the model unchanged.

Parameters:
uri - The uri of the confidence
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getconfidence

public static confidence getconfidence(com.hp.hpl.jena.rdf.model.Resource resource,
                                       com.hp.hpl.jena.rdf.model.Model model)
                                throws com.ibm.adtech.jastor.JastorException
Create a new instance of confidence. Leaves the model unchanged.

Parameters:
resource - The resource of the confidence
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllconfidence

public static java.util.List getAllconfidence(com.hp.hpl.jena.rdf.model.Model model)
                                       throws com.ibm.adtech.jastor.JastorException
Return an instance of confidence for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#confidence

Parameters:
model - the Jena Model
Returns:
a List of confidence
Throws:
com.ibm.adtech.jastor.JastorException

createrelationshipXref

public static relationshipXref createrelationshipXref(com.hp.hpl.jena.rdf.model.Resource resource,
                                                      com.hp.hpl.jena.rdf.model.Model model)
                                               throws com.ibm.adtech.jastor.JastorException
Create a new instance of relationshipXref. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the relationshipXref
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createrelationshipXref

public static relationshipXref createrelationshipXref(java.lang.String uri,
                                                      com.hp.hpl.jena.rdf.model.Model model)
                                               throws com.ibm.adtech.jastor.JastorException
Create a new instance of relationshipXref. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the relationshipXref
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getrelationshipXref

public static relationshipXref getrelationshipXref(java.lang.String uri,
                                                   com.hp.hpl.jena.rdf.model.Model model)
                                            throws com.ibm.adtech.jastor.JastorException
Create a new instance of relationshipXref. Leaves the model unchanged.

Parameters:
uri - The uri of the relationshipXref
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getrelationshipXref

public static relationshipXref getrelationshipXref(com.hp.hpl.jena.rdf.model.Resource resource,
                                                   com.hp.hpl.jena.rdf.model.Model model)
                                            throws com.ibm.adtech.jastor.JastorException
Create a new instance of relationshipXref. Leaves the model unchanged.

Parameters:
resource - The resource of the relationshipXref
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllrelationshipXref

public static java.util.List getAllrelationshipXref(com.hp.hpl.jena.rdf.model.Model model)
                                             throws com.ibm.adtech.jastor.JastorException
Return an instance of relationshipXref for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#relationshipXref

Parameters:
model - the Jena Model
Returns:
a List of relationshipXref
Throws:
com.ibm.adtech.jastor.JastorException

createpublicationXref

public static publicationXref createpublicationXref(com.hp.hpl.jena.rdf.model.Resource resource,
                                                    com.hp.hpl.jena.rdf.model.Model model)
                                             throws com.ibm.adtech.jastor.JastorException
Create a new instance of publicationXref. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the publicationXref
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createpublicationXref

public static publicationXref createpublicationXref(java.lang.String uri,
                                                    com.hp.hpl.jena.rdf.model.Model model)
                                             throws com.ibm.adtech.jastor.JastorException
Create a new instance of publicationXref. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the publicationXref
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getpublicationXref

public static publicationXref getpublicationXref(java.lang.String uri,
                                                 com.hp.hpl.jena.rdf.model.Model model)
                                          throws com.ibm.adtech.jastor.JastorException
Create a new instance of publicationXref. Leaves the model unchanged.

Parameters:
uri - The uri of the publicationXref
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getpublicationXref

public static publicationXref getpublicationXref(com.hp.hpl.jena.rdf.model.Resource resource,
                                                 com.hp.hpl.jena.rdf.model.Model model)
                                          throws com.ibm.adtech.jastor.JastorException
Create a new instance of publicationXref. Leaves the model unchanged.

Parameters:
resource - The resource of the publicationXref
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllpublicationXref

public static java.util.List getAllpublicationXref(com.hp.hpl.jena.rdf.model.Model model)
                                            throws com.ibm.adtech.jastor.JastorException
Return an instance of publicationXref for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#publicationXref

Parameters:
model - the Jena Model
Returns:
a List of publicationXref
Throws:
com.ibm.adtech.jastor.JastorException

createphysicalEntityParticipant

public static physicalEntityParticipant createphysicalEntityParticipant(com.hp.hpl.jena.rdf.model.Resource resource,
                                                                        com.hp.hpl.jena.rdf.model.Model model)
                                                                 throws com.ibm.adtech.jastor.JastorException
Create a new instance of physicalEntityParticipant. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the physicalEntityParticipant
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createphysicalEntityParticipant

public static physicalEntityParticipant createphysicalEntityParticipant(java.lang.String uri,
                                                                        com.hp.hpl.jena.rdf.model.Model model)
                                                                 throws com.ibm.adtech.jastor.JastorException
Create a new instance of physicalEntityParticipant. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the physicalEntityParticipant
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getphysicalEntityParticipant

public static physicalEntityParticipant getphysicalEntityParticipant(java.lang.String uri,
                                                                     com.hp.hpl.jena.rdf.model.Model model)
                                                              throws com.ibm.adtech.jastor.JastorException
Create a new instance of physicalEntityParticipant. Leaves the model unchanged.

Parameters:
uri - The uri of the physicalEntityParticipant
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getphysicalEntityParticipant

public static physicalEntityParticipant getphysicalEntityParticipant(com.hp.hpl.jena.rdf.model.Resource resource,
                                                                     com.hp.hpl.jena.rdf.model.Model model)
                                                              throws com.ibm.adtech.jastor.JastorException
Create a new instance of physicalEntityParticipant. Leaves the model unchanged.

Parameters:
resource - The resource of the physicalEntityParticipant
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllphysicalEntityParticipant

public static java.util.List getAllphysicalEntityParticipant(com.hp.hpl.jena.rdf.model.Model model)
                                                      throws com.ibm.adtech.jastor.JastorException
Return an instance of physicalEntityParticipant for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#physicalEntityParticipant

Parameters:
model - the Jena Model
Returns:
a List of physicalEntityParticipant
Throws:
com.ibm.adtech.jastor.JastorException

createexperimentalForm

public static experimentalForm createexperimentalForm(com.hp.hpl.jena.rdf.model.Resource resource,
                                                      com.hp.hpl.jena.rdf.model.Model model)
                                               throws com.ibm.adtech.jastor.JastorException
Create a new instance of experimentalForm. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the experimentalForm
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createexperimentalForm

public static experimentalForm createexperimentalForm(java.lang.String uri,
                                                      com.hp.hpl.jena.rdf.model.Model model)
                                               throws com.ibm.adtech.jastor.JastorException
Create a new instance of experimentalForm. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the experimentalForm
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getexperimentalForm

public static experimentalForm getexperimentalForm(java.lang.String uri,
                                                   com.hp.hpl.jena.rdf.model.Model model)
                                            throws com.ibm.adtech.jastor.JastorException
Create a new instance of experimentalForm. Leaves the model unchanged.

Parameters:
uri - The uri of the experimentalForm
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getexperimentalForm

public static experimentalForm getexperimentalForm(com.hp.hpl.jena.rdf.model.Resource resource,
                                                   com.hp.hpl.jena.rdf.model.Model model)
                                            throws com.ibm.adtech.jastor.JastorException
Create a new instance of experimentalForm. Leaves the model unchanged.

Parameters:
resource - The resource of the experimentalForm
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllexperimentalForm

public static java.util.List getAllexperimentalForm(com.hp.hpl.jena.rdf.model.Model model)
                                             throws com.ibm.adtech.jastor.JastorException
Return an instance of experimentalForm for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#experimentalForm

Parameters:
model - the Jena Model
Returns:
a List of experimentalForm
Throws:
com.ibm.adtech.jastor.JastorException

createcatalysis

public static catalysis createcatalysis(com.hp.hpl.jena.rdf.model.Resource resource,
                                        com.hp.hpl.jena.rdf.model.Model model)
                                 throws com.ibm.adtech.jastor.JastorException
Create a new instance of catalysis. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the catalysis
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createcatalysis

public static catalysis createcatalysis(java.lang.String uri,
                                        com.hp.hpl.jena.rdf.model.Model model)
                                 throws com.ibm.adtech.jastor.JastorException
Create a new instance of catalysis. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the catalysis
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getcatalysis

public static catalysis getcatalysis(java.lang.String uri,
                                     com.hp.hpl.jena.rdf.model.Model model)
                              throws com.ibm.adtech.jastor.JastorException
Create a new instance of catalysis. Leaves the model unchanged.

Parameters:
uri - The uri of the catalysis
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getcatalysis

public static catalysis getcatalysis(com.hp.hpl.jena.rdf.model.Resource resource,
                                     com.hp.hpl.jena.rdf.model.Model model)
                              throws com.ibm.adtech.jastor.JastorException
Create a new instance of catalysis. Leaves the model unchanged.

Parameters:
resource - The resource of the catalysis
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllcatalysis

public static java.util.List getAllcatalysis(com.hp.hpl.jena.rdf.model.Model model)
                                      throws com.ibm.adtech.jastor.JastorException
Return an instance of catalysis for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#catalysis

Parameters:
model - the Jena Model
Returns:
a List of catalysis
Throws:
com.ibm.adtech.jastor.JastorException

createcomplexAssembly

public static complexAssembly createcomplexAssembly(com.hp.hpl.jena.rdf.model.Resource resource,
                                                    com.hp.hpl.jena.rdf.model.Model model)
                                             throws com.ibm.adtech.jastor.JastorException
Create a new instance of complexAssembly. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the complexAssembly
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createcomplexAssembly

public static complexAssembly createcomplexAssembly(java.lang.String uri,
                                                    com.hp.hpl.jena.rdf.model.Model model)
                                             throws com.ibm.adtech.jastor.JastorException
Create a new instance of complexAssembly. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the complexAssembly
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getcomplexAssembly

public static complexAssembly getcomplexAssembly(java.lang.String uri,
                                                 com.hp.hpl.jena.rdf.model.Model model)
                                          throws com.ibm.adtech.jastor.JastorException
Create a new instance of complexAssembly. Leaves the model unchanged.

Parameters:
uri - The uri of the complexAssembly
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getcomplexAssembly

public static complexAssembly getcomplexAssembly(com.hp.hpl.jena.rdf.model.Resource resource,
                                                 com.hp.hpl.jena.rdf.model.Model model)
                                          throws com.ibm.adtech.jastor.JastorException
Create a new instance of complexAssembly. Leaves the model unchanged.

Parameters:
resource - The resource of the complexAssembly
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllcomplexAssembly

public static java.util.List getAllcomplexAssembly(com.hp.hpl.jena.rdf.model.Model model)
                                            throws com.ibm.adtech.jastor.JastorException
Return an instance of complexAssembly for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#complexAssembly

Parameters:
model - the Jena Model
Returns:
a List of complexAssembly
Throws:
com.ibm.adtech.jastor.JastorException

createphysicalEntity

public static physicalEntity createphysicalEntity(com.hp.hpl.jena.rdf.model.Resource resource,
                                                  com.hp.hpl.jena.rdf.model.Model model)
                                           throws com.ibm.adtech.jastor.JastorException
Create a new instance of physicalEntity. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the physicalEntity
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createphysicalEntity

public static physicalEntity createphysicalEntity(java.lang.String uri,
                                                  com.hp.hpl.jena.rdf.model.Model model)
                                           throws com.ibm.adtech.jastor.JastorException
Create a new instance of physicalEntity. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the physicalEntity
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getphysicalEntity

public static physicalEntity getphysicalEntity(java.lang.String uri,
                                               com.hp.hpl.jena.rdf.model.Model model)
                                        throws com.ibm.adtech.jastor.JastorException
Create a new instance of physicalEntity. Leaves the model unchanged.

Parameters:
uri - The uri of the physicalEntity
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getphysicalEntity

public static physicalEntity getphysicalEntity(com.hp.hpl.jena.rdf.model.Resource resource,
                                               com.hp.hpl.jena.rdf.model.Model model)
                                        throws com.ibm.adtech.jastor.JastorException
Create a new instance of physicalEntity. Leaves the model unchanged.

Parameters:
resource - The resource of the physicalEntity
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllphysicalEntity

public static java.util.List getAllphysicalEntity(com.hp.hpl.jena.rdf.model.Model model)
                                           throws com.ibm.adtech.jastor.JastorException
Return an instance of physicalEntity for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#physicalEntity

Parameters:
model - the Jena Model
Returns:
a List of physicalEntity
Throws:
com.ibm.adtech.jastor.JastorException

createchemicalStructure

public static chemicalStructure createchemicalStructure(com.hp.hpl.jena.rdf.model.Resource resource,
                                                        com.hp.hpl.jena.rdf.model.Model model)
                                                 throws com.ibm.adtech.jastor.JastorException
Create a new instance of chemicalStructure. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the chemicalStructure
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createchemicalStructure

public static chemicalStructure createchemicalStructure(java.lang.String uri,
                                                        com.hp.hpl.jena.rdf.model.Model model)
                                                 throws com.ibm.adtech.jastor.JastorException
Create a new instance of chemicalStructure. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the chemicalStructure
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getchemicalStructure

public static chemicalStructure getchemicalStructure(java.lang.String uri,
                                                     com.hp.hpl.jena.rdf.model.Model model)
                                              throws com.ibm.adtech.jastor.JastorException
Create a new instance of chemicalStructure. Leaves the model unchanged.

Parameters:
uri - The uri of the chemicalStructure
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getchemicalStructure

public static chemicalStructure getchemicalStructure(com.hp.hpl.jena.rdf.model.Resource resource,
                                                     com.hp.hpl.jena.rdf.model.Model model)
                                              throws com.ibm.adtech.jastor.JastorException
Create a new instance of chemicalStructure. Leaves the model unchanged.

Parameters:
resource - The resource of the chemicalStructure
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllchemicalStructure

public static java.util.List getAllchemicalStructure(com.hp.hpl.jena.rdf.model.Model model)
                                              throws com.ibm.adtech.jastor.JastorException
Return an instance of chemicalStructure for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#chemicalStructure

Parameters:
model - the Jena Model
Returns:
a List of chemicalStructure
Throws:
com.ibm.adtech.jastor.JastorException

createsequenceInterval

public static sequenceInterval createsequenceInterval(com.hp.hpl.jena.rdf.model.Resource resource,
                                                      com.hp.hpl.jena.rdf.model.Model model)
                                               throws com.ibm.adtech.jastor.JastorException
Create a new instance of sequenceInterval. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the sequenceInterval
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createsequenceInterval

public static sequenceInterval createsequenceInterval(java.lang.String uri,
                                                      com.hp.hpl.jena.rdf.model.Model model)
                                               throws com.ibm.adtech.jastor.JastorException
Create a new instance of sequenceInterval. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the sequenceInterval
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getsequenceInterval

public static sequenceInterval getsequenceInterval(java.lang.String uri,
                                                   com.hp.hpl.jena.rdf.model.Model model)
                                            throws com.ibm.adtech.jastor.JastorException
Create a new instance of sequenceInterval. Leaves the model unchanged.

Parameters:
uri - The uri of the sequenceInterval
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getsequenceInterval

public static sequenceInterval getsequenceInterval(com.hp.hpl.jena.rdf.model.Resource resource,
                                                   com.hp.hpl.jena.rdf.model.Model model)
                                            throws com.ibm.adtech.jastor.JastorException
Create a new instance of sequenceInterval. Leaves the model unchanged.

Parameters:
resource - The resource of the sequenceInterval
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllsequenceInterval

public static java.util.List getAllsequenceInterval(com.hp.hpl.jena.rdf.model.Model model)
                                             throws com.ibm.adtech.jastor.JastorException
Return an instance of sequenceInterval for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#sequenceInterval

Parameters:
model - the Jena Model
Returns:
a List of sequenceInterval
Throws:
com.ibm.adtech.jastor.JastorException

createcomplex

public static complex createcomplex(com.hp.hpl.jena.rdf.model.Resource resource,
                                    com.hp.hpl.jena.rdf.model.Model model)
                             throws com.ibm.adtech.jastor.JastorException
Create a new instance of complex. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the complex
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createcomplex

public static complex createcomplex(java.lang.String uri,
                                    com.hp.hpl.jena.rdf.model.Model model)
                             throws com.ibm.adtech.jastor.JastorException
Create a new instance of complex. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the complex
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getcomplex

public static complex getcomplex(java.lang.String uri,
                                 com.hp.hpl.jena.rdf.model.Model model)
                          throws com.ibm.adtech.jastor.JastorException
Create a new instance of complex. Leaves the model unchanged.

Parameters:
uri - The uri of the complex
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getcomplex

public static complex getcomplex(com.hp.hpl.jena.rdf.model.Resource resource,
                                 com.hp.hpl.jena.rdf.model.Model model)
                          throws com.ibm.adtech.jastor.JastorException
Create a new instance of complex. Leaves the model unchanged.

Parameters:
resource - The resource of the complex
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllcomplex

public static java.util.List getAllcomplex(com.hp.hpl.jena.rdf.model.Model model)
                                    throws com.ibm.adtech.jastor.JastorException
Return an instance of complex for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#complex

Parameters:
model - the Jena Model
Returns:
a List of complex
Throws:
com.ibm.adtech.jastor.JastorException

createdataSource

public static dataSource createdataSource(com.hp.hpl.jena.rdf.model.Resource resource,
                                          com.hp.hpl.jena.rdf.model.Model model)
                                   throws com.ibm.adtech.jastor.JastorException
Create a new instance of dataSource. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the dataSource
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createdataSource

public static dataSource createdataSource(java.lang.String uri,
                                          com.hp.hpl.jena.rdf.model.Model model)
                                   throws com.ibm.adtech.jastor.JastorException
Create a new instance of dataSource. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the dataSource
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getdataSource

public static dataSource getdataSource(java.lang.String uri,
                                       com.hp.hpl.jena.rdf.model.Model model)
                                throws com.ibm.adtech.jastor.JastorException
Create a new instance of dataSource. Leaves the model unchanged.

Parameters:
uri - The uri of the dataSource
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getdataSource

public static dataSource getdataSource(com.hp.hpl.jena.rdf.model.Resource resource,
                                       com.hp.hpl.jena.rdf.model.Model model)
                                throws com.ibm.adtech.jastor.JastorException
Create a new instance of dataSource. Leaves the model unchanged.

Parameters:
resource - The resource of the dataSource
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAlldataSource

public static java.util.List getAlldataSource(com.hp.hpl.jena.rdf.model.Model model)
                                       throws com.ibm.adtech.jastor.JastorException
Return an instance of dataSource for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#dataSource

Parameters:
model - the Jena Model
Returns:
a List of dataSource
Throws:
com.ibm.adtech.jastor.JastorException

createdna

public static dna createdna(com.hp.hpl.jena.rdf.model.Resource resource,
                            com.hp.hpl.jena.rdf.model.Model model)
                     throws com.ibm.adtech.jastor.JastorException
Create a new instance of dna. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the dna
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createdna

public static dna createdna(java.lang.String uri,
                            com.hp.hpl.jena.rdf.model.Model model)
                     throws com.ibm.adtech.jastor.JastorException
Create a new instance of dna. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the dna
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getdna

public static dna getdna(java.lang.String uri,
                         com.hp.hpl.jena.rdf.model.Model model)
                  throws com.ibm.adtech.jastor.JastorException
Create a new instance of dna. Leaves the model unchanged.

Parameters:
uri - The uri of the dna
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getdna

public static dna getdna(com.hp.hpl.jena.rdf.model.Resource resource,
                         com.hp.hpl.jena.rdf.model.Model model)
                  throws com.ibm.adtech.jastor.JastorException
Create a new instance of dna. Leaves the model unchanged.

Parameters:
resource - The resource of the dna
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAlldna

public static java.util.List getAlldna(com.hp.hpl.jena.rdf.model.Model model)
                                throws com.ibm.adtech.jastor.JastorException
Return an instance of dna for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#dna

Parameters:
model - the Jena Model
Returns:
a List of dna
Throws:
com.ibm.adtech.jastor.JastorException

createsequenceParticipant

public static sequenceParticipant createsequenceParticipant(com.hp.hpl.jena.rdf.model.Resource resource,
                                                            com.hp.hpl.jena.rdf.model.Model model)
                                                     throws com.ibm.adtech.jastor.JastorException
Create a new instance of sequenceParticipant. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the sequenceParticipant
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createsequenceParticipant

public static sequenceParticipant createsequenceParticipant(java.lang.String uri,
                                                            com.hp.hpl.jena.rdf.model.Model model)
                                                     throws com.ibm.adtech.jastor.JastorException
Create a new instance of sequenceParticipant. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the sequenceParticipant
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getsequenceParticipant

public static sequenceParticipant getsequenceParticipant(java.lang.String uri,
                                                         com.hp.hpl.jena.rdf.model.Model model)
                                                  throws com.ibm.adtech.jastor.JastorException
Create a new instance of sequenceParticipant. Leaves the model unchanged.

Parameters:
uri - The uri of the sequenceParticipant
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getsequenceParticipant

public static sequenceParticipant getsequenceParticipant(com.hp.hpl.jena.rdf.model.Resource resource,
                                                         com.hp.hpl.jena.rdf.model.Model model)
                                                  throws com.ibm.adtech.jastor.JastorException
Create a new instance of sequenceParticipant. Leaves the model unchanged.

Parameters:
resource - The resource of the sequenceParticipant
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllsequenceParticipant

public static java.util.List getAllsequenceParticipant(com.hp.hpl.jena.rdf.model.Model model)
                                                throws com.ibm.adtech.jastor.JastorException
Return an instance of sequenceParticipant for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#sequenceParticipant

Parameters:
model - the Jena Model
Returns:
a List of sequenceParticipant
Throws:
com.ibm.adtech.jastor.JastorException

createsequenceSite

public static sequenceSite createsequenceSite(com.hp.hpl.jena.rdf.model.Resource resource,
                                              com.hp.hpl.jena.rdf.model.Model model)
                                       throws com.ibm.adtech.jastor.JastorException
Create a new instance of sequenceSite. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the sequenceSite
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createsequenceSite

public static sequenceSite createsequenceSite(java.lang.String uri,
                                              com.hp.hpl.jena.rdf.model.Model model)
                                       throws com.ibm.adtech.jastor.JastorException
Create a new instance of sequenceSite. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the sequenceSite
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getsequenceSite

public static sequenceSite getsequenceSite(java.lang.String uri,
                                           com.hp.hpl.jena.rdf.model.Model model)
                                    throws com.ibm.adtech.jastor.JastorException
Create a new instance of sequenceSite. Leaves the model unchanged.

Parameters:
uri - The uri of the sequenceSite
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getsequenceSite

public static sequenceSite getsequenceSite(com.hp.hpl.jena.rdf.model.Resource resource,
                                           com.hp.hpl.jena.rdf.model.Model model)
                                    throws com.ibm.adtech.jastor.JastorException
Create a new instance of sequenceSite. Leaves the model unchanged.

Parameters:
resource - The resource of the sequenceSite
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllsequenceSite

public static java.util.List getAllsequenceSite(com.hp.hpl.jena.rdf.model.Model model)
                                         throws com.ibm.adtech.jastor.JastorException
Return an instance of sequenceSite for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#sequenceSite

Parameters:
model - the Jena Model
Returns:
a List of sequenceSite
Throws:
com.ibm.adtech.jastor.JastorException

createunificationXref

public static unificationXref createunificationXref(com.hp.hpl.jena.rdf.model.Resource resource,
                                                    com.hp.hpl.jena.rdf.model.Model model)
                                             throws com.ibm.adtech.jastor.JastorException
Create a new instance of unificationXref. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the unificationXref
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createunificationXref

public static unificationXref createunificationXref(java.lang.String uri,
                                                    com.hp.hpl.jena.rdf.model.Model model)
                                             throws com.ibm.adtech.jastor.JastorException
Create a new instance of unificationXref. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the unificationXref
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getunificationXref

public static unificationXref getunificationXref(java.lang.String uri,
                                                 com.hp.hpl.jena.rdf.model.Model model)
                                          throws com.ibm.adtech.jastor.JastorException
Create a new instance of unificationXref. Leaves the model unchanged.

Parameters:
uri - The uri of the unificationXref
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getunificationXref

public static unificationXref getunificationXref(com.hp.hpl.jena.rdf.model.Resource resource,
                                                 com.hp.hpl.jena.rdf.model.Model model)
                                          throws com.ibm.adtech.jastor.JastorException
Create a new instance of unificationXref. Leaves the model unchanged.

Parameters:
resource - The resource of the unificationXref
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllunificationXref

public static java.util.List getAllunificationXref(com.hp.hpl.jena.rdf.model.Model model)
                                            throws com.ibm.adtech.jastor.JastorException
Return an instance of unificationXref for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#unificationXref

Parameters:
model - the Jena Model
Returns:
a List of unificationXref
Throws:
com.ibm.adtech.jastor.JastorException

createtransport

public static transport createtransport(com.hp.hpl.jena.rdf.model.Resource resource,
                                        com.hp.hpl.jena.rdf.model.Model model)
                                 throws com.ibm.adtech.jastor.JastorException
Create a new instance of transport. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the transport
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createtransport

public static transport createtransport(java.lang.String uri,
                                        com.hp.hpl.jena.rdf.model.Model model)
                                 throws com.ibm.adtech.jastor.JastorException
Create a new instance of transport. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the transport
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

gettransport

public static transport gettransport(java.lang.String uri,
                                     com.hp.hpl.jena.rdf.model.Model model)
                              throws com.ibm.adtech.jastor.JastorException
Create a new instance of transport. Leaves the model unchanged.

Parameters:
uri - The uri of the transport
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

gettransport

public static transport gettransport(com.hp.hpl.jena.rdf.model.Resource resource,
                                     com.hp.hpl.jena.rdf.model.Model model)
                              throws com.ibm.adtech.jastor.JastorException
Create a new instance of transport. Leaves the model unchanged.

Parameters:
resource - The resource of the transport
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAlltransport

public static java.util.List getAlltransport(com.hp.hpl.jena.rdf.model.Model model)
                                      throws com.ibm.adtech.jastor.JastorException
Return an instance of transport for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#transport

Parameters:
model - the Jena Model
Returns:
a List of transport
Throws:
com.ibm.adtech.jastor.JastorException

createtransportWithBiochemicalReaction

public static transportWithBiochemicalReaction createtransportWithBiochemicalReaction(com.hp.hpl.jena.rdf.model.Resource resource,
                                                                                      com.hp.hpl.jena.rdf.model.Model model)
                                                                               throws com.ibm.adtech.jastor.JastorException
Create a new instance of transportWithBiochemicalReaction. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the transportWithBiochemicalReaction
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createtransportWithBiochemicalReaction

public static transportWithBiochemicalReaction createtransportWithBiochemicalReaction(java.lang.String uri,
                                                                                      com.hp.hpl.jena.rdf.model.Model model)
                                                                               throws com.ibm.adtech.jastor.JastorException
Create a new instance of transportWithBiochemicalReaction. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the transportWithBiochemicalReaction
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

gettransportWithBiochemicalReaction

public static transportWithBiochemicalReaction gettransportWithBiochemicalReaction(java.lang.String uri,
                                                                                   com.hp.hpl.jena.rdf.model.Model model)
                                                                            throws com.ibm.adtech.jastor.JastorException
Create a new instance of transportWithBiochemicalReaction. Leaves the model unchanged.

Parameters:
uri - The uri of the transportWithBiochemicalReaction
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

gettransportWithBiochemicalReaction

public static transportWithBiochemicalReaction gettransportWithBiochemicalReaction(com.hp.hpl.jena.rdf.model.Resource resource,
                                                                                   com.hp.hpl.jena.rdf.model.Model model)
                                                                            throws com.ibm.adtech.jastor.JastorException
Create a new instance of transportWithBiochemicalReaction. Leaves the model unchanged.

Parameters:
resource - The resource of the transportWithBiochemicalReaction
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAlltransportWithBiochemicalReaction

public static java.util.List getAlltransportWithBiochemicalReaction(com.hp.hpl.jena.rdf.model.Model model)
                                                             throws com.ibm.adtech.jastor.JastorException
Return an instance of transportWithBiochemicalReaction for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#transportWithBiochemicalReaction

Parameters:
model - the Jena Model
Returns:
a List of transportWithBiochemicalReaction
Throws:
com.ibm.adtech.jastor.JastorException

createbiochemicalReaction

public static biochemicalReaction createbiochemicalReaction(com.hp.hpl.jena.rdf.model.Resource resource,
                                                            com.hp.hpl.jena.rdf.model.Model model)
                                                     throws com.ibm.adtech.jastor.JastorException
Create a new instance of biochemicalReaction. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the biochemicalReaction
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createbiochemicalReaction

public static biochemicalReaction createbiochemicalReaction(java.lang.String uri,
                                                            com.hp.hpl.jena.rdf.model.Model model)
                                                     throws com.ibm.adtech.jastor.JastorException
Create a new instance of biochemicalReaction. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the biochemicalReaction
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getbiochemicalReaction

public static biochemicalReaction getbiochemicalReaction(java.lang.String uri,
                                                         com.hp.hpl.jena.rdf.model.Model model)
                                                  throws com.ibm.adtech.jastor.JastorException
Create a new instance of biochemicalReaction. Leaves the model unchanged.

Parameters:
uri - The uri of the biochemicalReaction
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getbiochemicalReaction

public static biochemicalReaction getbiochemicalReaction(com.hp.hpl.jena.rdf.model.Resource resource,
                                                         com.hp.hpl.jena.rdf.model.Model model)
                                                  throws com.ibm.adtech.jastor.JastorException
Create a new instance of biochemicalReaction. Leaves the model unchanged.

Parameters:
resource - The resource of the biochemicalReaction
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllbiochemicalReaction

public static java.util.List getAllbiochemicalReaction(com.hp.hpl.jena.rdf.model.Model model)
                                                throws com.ibm.adtech.jastor.JastorException
Return an instance of biochemicalReaction for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#biochemicalReaction

Parameters:
model - the Jena Model
Returns:
a List of biochemicalReaction
Throws:
com.ibm.adtech.jastor.JastorException

createinteraction

public static interaction createinteraction(com.hp.hpl.jena.rdf.model.Resource resource,
                                            com.hp.hpl.jena.rdf.model.Model model)
                                     throws com.ibm.adtech.jastor.JastorException
Create a new instance of interaction. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the interaction
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createinteraction

public static interaction createinteraction(java.lang.String uri,
                                            com.hp.hpl.jena.rdf.model.Model model)
                                     throws com.ibm.adtech.jastor.JastorException
Create a new instance of interaction. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the interaction
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getinteraction

public static interaction getinteraction(java.lang.String uri,
                                         com.hp.hpl.jena.rdf.model.Model model)
                                  throws com.ibm.adtech.jastor.JastorException
Create a new instance of interaction. Leaves the model unchanged.

Parameters:
uri - The uri of the interaction
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getinteraction

public static interaction getinteraction(com.hp.hpl.jena.rdf.model.Resource resource,
                                         com.hp.hpl.jena.rdf.model.Model model)
                                  throws com.ibm.adtech.jastor.JastorException
Create a new instance of interaction. Leaves the model unchanged.

Parameters:
resource - The resource of the interaction
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllinteraction

public static java.util.List getAllinteraction(com.hp.hpl.jena.rdf.model.Model model)
                                        throws com.ibm.adtech.jastor.JastorException
Return an instance of interaction for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#interaction

Parameters:
model - the Jena Model
Returns:
a List of interaction
Throws:
com.ibm.adtech.jastor.JastorException

createkPrime

public static kPrime createkPrime(com.hp.hpl.jena.rdf.model.Resource resource,
                                  com.hp.hpl.jena.rdf.model.Model model)
                           throws com.ibm.adtech.jastor.JastorException
Create a new instance of kPrime. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the kPrime
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createkPrime

public static kPrime createkPrime(java.lang.String uri,
                                  com.hp.hpl.jena.rdf.model.Model model)
                           throws com.ibm.adtech.jastor.JastorException
Create a new instance of kPrime. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the kPrime
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getkPrime

public static kPrime getkPrime(java.lang.String uri,
                               com.hp.hpl.jena.rdf.model.Model model)
                        throws com.ibm.adtech.jastor.JastorException
Create a new instance of kPrime. Leaves the model unchanged.

Parameters:
uri - The uri of the kPrime
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getkPrime

public static kPrime getkPrime(com.hp.hpl.jena.rdf.model.Resource resource,
                               com.hp.hpl.jena.rdf.model.Model model)
                        throws com.ibm.adtech.jastor.JastorException
Create a new instance of kPrime. Leaves the model unchanged.

Parameters:
resource - The resource of the kPrime
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllkPrime

public static java.util.List getAllkPrime(com.hp.hpl.jena.rdf.model.Model model)
                                   throws com.ibm.adtech.jastor.JastorException
Return an instance of kPrime for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#kPrime

Parameters:
model - the Jena Model
Returns:
a List of kPrime
Throws:
com.ibm.adtech.jastor.JastorException

createbioSource

public static bioSource createbioSource(com.hp.hpl.jena.rdf.model.Resource resource,
                                        com.hp.hpl.jena.rdf.model.Model model)
                                 throws com.ibm.adtech.jastor.JastorException
Create a new instance of bioSource. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the bioSource
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createbioSource

public static bioSource createbioSource(java.lang.String uri,
                                        com.hp.hpl.jena.rdf.model.Model model)
                                 throws com.ibm.adtech.jastor.JastorException
Create a new instance of bioSource. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the bioSource
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getbioSource

public static bioSource getbioSource(java.lang.String uri,
                                     com.hp.hpl.jena.rdf.model.Model model)
                              throws com.ibm.adtech.jastor.JastorException
Create a new instance of bioSource. Leaves the model unchanged.

Parameters:
uri - The uri of the bioSource
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getbioSource

public static bioSource getbioSource(com.hp.hpl.jena.rdf.model.Resource resource,
                                     com.hp.hpl.jena.rdf.model.Model model)
                              throws com.ibm.adtech.jastor.JastorException
Create a new instance of bioSource. Leaves the model unchanged.

Parameters:
resource - The resource of the bioSource
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllbioSource

public static java.util.List getAllbioSource(com.hp.hpl.jena.rdf.model.Model model)
                                      throws com.ibm.adtech.jastor.JastorException
Return an instance of bioSource for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#bioSource

Parameters:
model - the Jena Model
Returns:
a List of bioSource
Throws:
com.ibm.adtech.jastor.JastorException

createsmallMolecule

public static smallMolecule createsmallMolecule(com.hp.hpl.jena.rdf.model.Resource resource,
                                                com.hp.hpl.jena.rdf.model.Model model)
                                         throws com.ibm.adtech.jastor.JastorException
Create a new instance of smallMolecule. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the smallMolecule
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createsmallMolecule

public static smallMolecule createsmallMolecule(java.lang.String uri,
                                                com.hp.hpl.jena.rdf.model.Model model)
                                         throws com.ibm.adtech.jastor.JastorException
Create a new instance of smallMolecule. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the smallMolecule
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getsmallMolecule

public static smallMolecule getsmallMolecule(java.lang.String uri,
                                             com.hp.hpl.jena.rdf.model.Model model)
                                      throws com.ibm.adtech.jastor.JastorException
Create a new instance of smallMolecule. Leaves the model unchanged.

Parameters:
uri - The uri of the smallMolecule
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getsmallMolecule

public static smallMolecule getsmallMolecule(com.hp.hpl.jena.rdf.model.Resource resource,
                                             com.hp.hpl.jena.rdf.model.Model model)
                                      throws com.ibm.adtech.jastor.JastorException
Create a new instance of smallMolecule. Leaves the model unchanged.

Parameters:
resource - The resource of the smallMolecule
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllsmallMolecule

public static java.util.List getAllsmallMolecule(com.hp.hpl.jena.rdf.model.Model model)
                                          throws com.ibm.adtech.jastor.JastorException
Return an instance of smallMolecule for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#smallMolecule

Parameters:
model - the Jena Model
Returns:
a List of smallMolecule
Throws:
com.ibm.adtech.jastor.JastorException

createexternalReferenceUtilityClass

public static externalReferenceUtilityClass createexternalReferenceUtilityClass(com.hp.hpl.jena.rdf.model.Resource resource,
                                                                                com.hp.hpl.jena.rdf.model.Model model)
                                                                         throws com.ibm.adtech.jastor.JastorException
Create a new instance of externalReferenceUtilityClass. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the externalReferenceUtilityClass
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createexternalReferenceUtilityClass

public static externalReferenceUtilityClass createexternalReferenceUtilityClass(java.lang.String uri,
                                                                                com.hp.hpl.jena.rdf.model.Model model)
                                                                         throws com.ibm.adtech.jastor.JastorException
Create a new instance of externalReferenceUtilityClass. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the externalReferenceUtilityClass
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getexternalReferenceUtilityClass

public static externalReferenceUtilityClass getexternalReferenceUtilityClass(java.lang.String uri,
                                                                             com.hp.hpl.jena.rdf.model.Model model)
                                                                      throws com.ibm.adtech.jastor.JastorException
Create a new instance of externalReferenceUtilityClass. Leaves the model unchanged.

Parameters:
uri - The uri of the externalReferenceUtilityClass
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getexternalReferenceUtilityClass

public static externalReferenceUtilityClass getexternalReferenceUtilityClass(com.hp.hpl.jena.rdf.model.Resource resource,
                                                                             com.hp.hpl.jena.rdf.model.Model model)
                                                                      throws com.ibm.adtech.jastor.JastorException
Create a new instance of externalReferenceUtilityClass. Leaves the model unchanged.

Parameters:
resource - The resource of the externalReferenceUtilityClass
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllexternalReferenceUtilityClass

public static java.util.List getAllexternalReferenceUtilityClass(com.hp.hpl.jena.rdf.model.Model model)
                                                          throws com.ibm.adtech.jastor.JastorException
Return an instance of externalReferenceUtilityClass for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#externalReferenceUtilityClass

Parameters:
model - the Jena Model
Returns:
a List of externalReferenceUtilityClass
Throws:
com.ibm.adtech.jastor.JastorException

createentity

public static entity createentity(com.hp.hpl.jena.rdf.model.Resource resource,
                                  com.hp.hpl.jena.rdf.model.Model model)
                           throws com.ibm.adtech.jastor.JastorException
Create a new instance of entity. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the entity
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createentity

public static entity createentity(java.lang.String uri,
                                  com.hp.hpl.jena.rdf.model.Model model)
                           throws com.ibm.adtech.jastor.JastorException
Create a new instance of entity. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the entity
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getentity

public static entity getentity(java.lang.String uri,
                               com.hp.hpl.jena.rdf.model.Model model)
                        throws com.ibm.adtech.jastor.JastorException
Create a new instance of entity. Leaves the model unchanged.

Parameters:
uri - The uri of the entity
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getentity

public static entity getentity(com.hp.hpl.jena.rdf.model.Resource resource,
                               com.hp.hpl.jena.rdf.model.Model model)
                        throws com.ibm.adtech.jastor.JastorException
Create a new instance of entity. Leaves the model unchanged.

Parameters:
resource - The resource of the entity
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllentity

public static java.util.List getAllentity(com.hp.hpl.jena.rdf.model.Model model)
                                   throws com.ibm.adtech.jastor.JastorException
Return an instance of entity for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#entity

Parameters:
model - the Jena Model
Returns:
a List of entity
Throws:
com.ibm.adtech.jastor.JastorException

createconversion

public static conversion createconversion(com.hp.hpl.jena.rdf.model.Resource resource,
                                          com.hp.hpl.jena.rdf.model.Model model)
                                   throws com.ibm.adtech.jastor.JastorException
Create a new instance of conversion. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the conversion
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createconversion

public static conversion createconversion(java.lang.String uri,
                                          com.hp.hpl.jena.rdf.model.Model model)
                                   throws com.ibm.adtech.jastor.JastorException
Create a new instance of conversion. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the conversion
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getconversion

public static conversion getconversion(java.lang.String uri,
                                       com.hp.hpl.jena.rdf.model.Model model)
                                throws com.ibm.adtech.jastor.JastorException
Create a new instance of conversion. Leaves the model unchanged.

Parameters:
uri - The uri of the conversion
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getconversion

public static conversion getconversion(com.hp.hpl.jena.rdf.model.Resource resource,
                                       com.hp.hpl.jena.rdf.model.Model model)
                                throws com.ibm.adtech.jastor.JastorException
Create a new instance of conversion. Leaves the model unchanged.

Parameters:
resource - The resource of the conversion
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllconversion

public static java.util.List getAllconversion(com.hp.hpl.jena.rdf.model.Model model)
                                       throws com.ibm.adtech.jastor.JastorException
Return an instance of conversion for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#conversion

Parameters:
model - the Jena Model
Returns:
a List of conversion
Throws:
com.ibm.adtech.jastor.JastorException

createphysicalInteraction

public static physicalInteraction createphysicalInteraction(com.hp.hpl.jena.rdf.model.Resource resource,
                                                            com.hp.hpl.jena.rdf.model.Model model)
                                                     throws com.ibm.adtech.jastor.JastorException
Create a new instance of physicalInteraction. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the physicalInteraction
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createphysicalInteraction

public static physicalInteraction createphysicalInteraction(java.lang.String uri,
                                                            com.hp.hpl.jena.rdf.model.Model model)
                                                     throws com.ibm.adtech.jastor.JastorException
Create a new instance of physicalInteraction. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the physicalInteraction
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getphysicalInteraction

public static physicalInteraction getphysicalInteraction(java.lang.String uri,
                                                         com.hp.hpl.jena.rdf.model.Model model)
                                                  throws com.ibm.adtech.jastor.JastorException
Create a new instance of physicalInteraction. Leaves the model unchanged.

Parameters:
uri - The uri of the physicalInteraction
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getphysicalInteraction

public static physicalInteraction getphysicalInteraction(com.hp.hpl.jena.rdf.model.Resource resource,
                                                         com.hp.hpl.jena.rdf.model.Model model)
                                                  throws com.ibm.adtech.jastor.JastorException
Create a new instance of physicalInteraction. Leaves the model unchanged.

Parameters:
resource - The resource of the physicalInteraction
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllphysicalInteraction

public static java.util.List getAllphysicalInteraction(com.hp.hpl.jena.rdf.model.Model model)
                                                throws com.ibm.adtech.jastor.JastorException
Return an instance of physicalInteraction for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#physicalInteraction

Parameters:
model - the Jena Model
Returns:
a List of physicalInteraction
Throws:
com.ibm.adtech.jastor.JastorException

createpathway

public static pathway createpathway(com.hp.hpl.jena.rdf.model.Resource resource,
                                    com.hp.hpl.jena.rdf.model.Model model)
                             throws com.ibm.adtech.jastor.JastorException
Create a new instance of pathway. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the pathway
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createpathway

public static pathway createpathway(java.lang.String uri,
                                    com.hp.hpl.jena.rdf.model.Model model)
                             throws com.ibm.adtech.jastor.JastorException
Create a new instance of pathway. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the pathway
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getpathway

public static pathway getpathway(java.lang.String uri,
                                 com.hp.hpl.jena.rdf.model.Model model)
                          throws com.ibm.adtech.jastor.JastorException
Create a new instance of pathway. Leaves the model unchanged.

Parameters:
uri - The uri of the pathway
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getpathway

public static pathway getpathway(com.hp.hpl.jena.rdf.model.Resource resource,
                                 com.hp.hpl.jena.rdf.model.Model model)
                          throws com.ibm.adtech.jastor.JastorException
Create a new instance of pathway. Leaves the model unchanged.

Parameters:
resource - The resource of the pathway
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllpathway

public static java.util.List getAllpathway(com.hp.hpl.jena.rdf.model.Model model)
                                    throws com.ibm.adtech.jastor.JastorException
Return an instance of pathway for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#pathway

Parameters:
model - the Jena Model
Returns:
a List of pathway
Throws:
com.ibm.adtech.jastor.JastorException

createsequenceFeature

public static sequenceFeature createsequenceFeature(com.hp.hpl.jena.rdf.model.Resource resource,
                                                    com.hp.hpl.jena.rdf.model.Model model)
                                             throws com.ibm.adtech.jastor.JastorException
Create a new instance of sequenceFeature. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the sequenceFeature
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createsequenceFeature

public static sequenceFeature createsequenceFeature(java.lang.String uri,
                                                    com.hp.hpl.jena.rdf.model.Model model)
                                             throws com.ibm.adtech.jastor.JastorException
Create a new instance of sequenceFeature. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the sequenceFeature
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getsequenceFeature

public static sequenceFeature getsequenceFeature(java.lang.String uri,
                                                 com.hp.hpl.jena.rdf.model.Model model)
                                          throws com.ibm.adtech.jastor.JastorException
Create a new instance of sequenceFeature. Leaves the model unchanged.

Parameters:
uri - The uri of the sequenceFeature
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getsequenceFeature

public static sequenceFeature getsequenceFeature(com.hp.hpl.jena.rdf.model.Resource resource,
                                                 com.hp.hpl.jena.rdf.model.Model model)
                                          throws com.ibm.adtech.jastor.JastorException
Create a new instance of sequenceFeature. Leaves the model unchanged.

Parameters:
resource - The resource of the sequenceFeature
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllsequenceFeature

public static java.util.List getAllsequenceFeature(com.hp.hpl.jena.rdf.model.Model model)
                                            throws com.ibm.adtech.jastor.JastorException
Return an instance of sequenceFeature for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#sequenceFeature

Parameters:
model - the Jena Model
Returns:
a List of sequenceFeature
Throws:
com.ibm.adtech.jastor.JastorException

createsequenceLocation

public static sequenceLocation createsequenceLocation(com.hp.hpl.jena.rdf.model.Resource resource,
                                                      com.hp.hpl.jena.rdf.model.Model model)
                                               throws com.ibm.adtech.jastor.JastorException
Create a new instance of sequenceLocation. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the sequenceLocation
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createsequenceLocation

public static sequenceLocation createsequenceLocation(java.lang.String uri,
                                                      com.hp.hpl.jena.rdf.model.Model model)
                                               throws com.ibm.adtech.jastor.JastorException
Create a new instance of sequenceLocation. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the sequenceLocation
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getsequenceLocation

public static sequenceLocation getsequenceLocation(java.lang.String uri,
                                                   com.hp.hpl.jena.rdf.model.Model model)
                                            throws com.ibm.adtech.jastor.JastorException
Create a new instance of sequenceLocation. Leaves the model unchanged.

Parameters:
uri - The uri of the sequenceLocation
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getsequenceLocation

public static sequenceLocation getsequenceLocation(com.hp.hpl.jena.rdf.model.Resource resource,
                                                   com.hp.hpl.jena.rdf.model.Model model)
                                            throws com.ibm.adtech.jastor.JastorException
Create a new instance of sequenceLocation. Leaves the model unchanged.

Parameters:
resource - The resource of the sequenceLocation
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllsequenceLocation

public static java.util.List getAllsequenceLocation(com.hp.hpl.jena.rdf.model.Model model)
                                             throws com.ibm.adtech.jastor.JastorException
Return an instance of sequenceLocation for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#sequenceLocation

Parameters:
model - the Jena Model
Returns:
a List of sequenceLocation
Throws:
com.ibm.adtech.jastor.JastorException

createevidence

public static evidence createevidence(com.hp.hpl.jena.rdf.model.Resource resource,
                                      com.hp.hpl.jena.rdf.model.Model model)
                               throws com.ibm.adtech.jastor.JastorException
Create a new instance of evidence. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the evidence
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createevidence

public static evidence createevidence(java.lang.String uri,
                                      com.hp.hpl.jena.rdf.model.Model model)
                               throws com.ibm.adtech.jastor.JastorException
Create a new instance of evidence. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the evidence
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getevidence

public static evidence getevidence(java.lang.String uri,
                                   com.hp.hpl.jena.rdf.model.Model model)
                            throws com.ibm.adtech.jastor.JastorException
Create a new instance of evidence. Leaves the model unchanged.

Parameters:
uri - The uri of the evidence
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getevidence

public static evidence getevidence(com.hp.hpl.jena.rdf.model.Resource resource,
                                   com.hp.hpl.jena.rdf.model.Model model)
                            throws com.ibm.adtech.jastor.JastorException
Create a new instance of evidence. Leaves the model unchanged.

Parameters:
resource - The resource of the evidence
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllevidence

public static java.util.List getAllevidence(com.hp.hpl.jena.rdf.model.Model model)
                                     throws com.ibm.adtech.jastor.JastorException
Return an instance of evidence for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#evidence

Parameters:
model - the Jena Model
Returns:
a List of evidence
Throws:
com.ibm.adtech.jastor.JastorException

createrna

public static rna createrna(com.hp.hpl.jena.rdf.model.Resource resource,
                            com.hp.hpl.jena.rdf.model.Model model)
                     throws com.ibm.adtech.jastor.JastorException
Create a new instance of rna. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the rna
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createrna

public static rna createrna(java.lang.String uri,
                            com.hp.hpl.jena.rdf.model.Model model)
                     throws com.ibm.adtech.jastor.JastorException
Create a new instance of rna. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the rna
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getrna

public static rna getrna(java.lang.String uri,
                         com.hp.hpl.jena.rdf.model.Model model)
                  throws com.ibm.adtech.jastor.JastorException
Create a new instance of rna. Leaves the model unchanged.

Parameters:
uri - The uri of the rna
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getrna

public static rna getrna(com.hp.hpl.jena.rdf.model.Resource resource,
                         com.hp.hpl.jena.rdf.model.Model model)
                  throws com.ibm.adtech.jastor.JastorException
Create a new instance of rna. Leaves the model unchanged.

Parameters:
resource - The resource of the rna
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllrna

public static java.util.List getAllrna(com.hp.hpl.jena.rdf.model.Model model)
                                throws com.ibm.adtech.jastor.JastorException
Return an instance of rna for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#rna

Parameters:
model - the Jena Model
Returns:
a List of rna
Throws:
com.ibm.adtech.jastor.JastorException

createxref

public static xref createxref(com.hp.hpl.jena.rdf.model.Resource resource,
                              com.hp.hpl.jena.rdf.model.Model model)
                       throws com.ibm.adtech.jastor.JastorException
Create a new instance of xref. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the xref
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createxref

public static xref createxref(java.lang.String uri,
                              com.hp.hpl.jena.rdf.model.Model model)
                       throws com.ibm.adtech.jastor.JastorException
Create a new instance of xref. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the xref
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getxref

public static xref getxref(java.lang.String uri,
                           com.hp.hpl.jena.rdf.model.Model model)
                    throws com.ibm.adtech.jastor.JastorException
Create a new instance of xref. Leaves the model unchanged.

Parameters:
uri - The uri of the xref
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getxref

public static xref getxref(com.hp.hpl.jena.rdf.model.Resource resource,
                           com.hp.hpl.jena.rdf.model.Model model)
                    throws com.ibm.adtech.jastor.JastorException
Create a new instance of xref. Leaves the model unchanged.

Parameters:
resource - The resource of the xref
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllxref

public static java.util.List getAllxref(com.hp.hpl.jena.rdf.model.Model model)
                                 throws com.ibm.adtech.jastor.JastorException
Return an instance of xref for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#xref

Parameters:
model - the Jena Model
Returns:
a List of xref
Throws:
com.ibm.adtech.jastor.JastorException

createmodulation

public static modulation createmodulation(com.hp.hpl.jena.rdf.model.Resource resource,
                                          com.hp.hpl.jena.rdf.model.Model model)
                                   throws com.ibm.adtech.jastor.JastorException
Create a new instance of modulation. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the modulation
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createmodulation

public static modulation createmodulation(java.lang.String uri,
                                          com.hp.hpl.jena.rdf.model.Model model)
                                   throws com.ibm.adtech.jastor.JastorException
Create a new instance of modulation. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the modulation
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getmodulation

public static modulation getmodulation(java.lang.String uri,
                                       com.hp.hpl.jena.rdf.model.Model model)
                                throws com.ibm.adtech.jastor.JastorException
Create a new instance of modulation. Leaves the model unchanged.

Parameters:
uri - The uri of the modulation
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getmodulation

public static modulation getmodulation(com.hp.hpl.jena.rdf.model.Resource resource,
                                       com.hp.hpl.jena.rdf.model.Model model)
                                throws com.ibm.adtech.jastor.JastorException
Create a new instance of modulation. Leaves the model unchanged.

Parameters:
resource - The resource of the modulation
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllmodulation

public static java.util.List getAllmodulation(com.hp.hpl.jena.rdf.model.Model model)
                                       throws com.ibm.adtech.jastor.JastorException
Return an instance of modulation for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#modulation

Parameters:
model - the Jena Model
Returns:
a List of modulation
Throws:
com.ibm.adtech.jastor.JastorException

createprotein

public static protein createprotein(com.hp.hpl.jena.rdf.model.Resource resource,
                                    com.hp.hpl.jena.rdf.model.Model model)
                             throws com.ibm.adtech.jastor.JastorException
Create a new instance of protein. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the protein
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createprotein

public static protein createprotein(java.lang.String uri,
                                    com.hp.hpl.jena.rdf.model.Model model)
                             throws com.ibm.adtech.jastor.JastorException
Create a new instance of protein. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the protein
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getprotein

public static protein getprotein(java.lang.String uri,
                                 com.hp.hpl.jena.rdf.model.Model model)
                          throws com.ibm.adtech.jastor.JastorException
Create a new instance of protein. Leaves the model unchanged.

Parameters:
uri - The uri of the protein
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getprotein

public static protein getprotein(com.hp.hpl.jena.rdf.model.Resource resource,
                                 com.hp.hpl.jena.rdf.model.Model model)
                          throws com.ibm.adtech.jastor.JastorException
Create a new instance of protein. Leaves the model unchanged.

Parameters:
resource - The resource of the protein
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllprotein

public static java.util.List getAllprotein(com.hp.hpl.jena.rdf.model.Model model)
                                    throws com.ibm.adtech.jastor.JastorException
Return an instance of protein for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#protein

Parameters:
model - the Jena Model
Returns:
a List of protein
Throws:
com.ibm.adtech.jastor.JastorException

createutilityClass

public static utilityClass createutilityClass(com.hp.hpl.jena.rdf.model.Resource resource,
                                              com.hp.hpl.jena.rdf.model.Model model)
                                       throws com.ibm.adtech.jastor.JastorException
Create a new instance of utilityClass. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the utilityClass
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createutilityClass

public static utilityClass createutilityClass(java.lang.String uri,
                                              com.hp.hpl.jena.rdf.model.Model model)
                                       throws com.ibm.adtech.jastor.JastorException
Create a new instance of utilityClass. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the utilityClass
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getutilityClass

public static utilityClass getutilityClass(java.lang.String uri,
                                           com.hp.hpl.jena.rdf.model.Model model)
                                    throws com.ibm.adtech.jastor.JastorException
Create a new instance of utilityClass. Leaves the model unchanged.

Parameters:
uri - The uri of the utilityClass
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getutilityClass

public static utilityClass getutilityClass(com.hp.hpl.jena.rdf.model.Resource resource,
                                           com.hp.hpl.jena.rdf.model.Model model)
                                    throws com.ibm.adtech.jastor.JastorException
Create a new instance of utilityClass. Leaves the model unchanged.

Parameters:
resource - The resource of the utilityClass
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllutilityClass

public static java.util.List getAllutilityClass(com.hp.hpl.jena.rdf.model.Model model)
                                         throws com.ibm.adtech.jastor.JastorException
Return an instance of utilityClass for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#utilityClass

Parameters:
model - the Jena Model
Returns:
a List of utilityClass
Throws:
com.ibm.adtech.jastor.JastorException

createopenControlledVocabulary

public static openControlledVocabulary createopenControlledVocabulary(com.hp.hpl.jena.rdf.model.Resource resource,
                                                                      com.hp.hpl.jena.rdf.model.Model model)
                                                               throws com.ibm.adtech.jastor.JastorException
Create a new instance of openControlledVocabulary. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the openControlledVocabulary
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createopenControlledVocabulary

public static openControlledVocabulary createopenControlledVocabulary(java.lang.String uri,
                                                                      com.hp.hpl.jena.rdf.model.Model model)
                                                               throws com.ibm.adtech.jastor.JastorException
Create a new instance of openControlledVocabulary. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the openControlledVocabulary
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getopenControlledVocabulary

public static openControlledVocabulary getopenControlledVocabulary(java.lang.String uri,
                                                                   com.hp.hpl.jena.rdf.model.Model model)
                                                            throws com.ibm.adtech.jastor.JastorException
Create a new instance of openControlledVocabulary. Leaves the model unchanged.

Parameters:
uri - The uri of the openControlledVocabulary
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getopenControlledVocabulary

public static openControlledVocabulary getopenControlledVocabulary(com.hp.hpl.jena.rdf.model.Resource resource,
                                                                   com.hp.hpl.jena.rdf.model.Model model)
                                                            throws com.ibm.adtech.jastor.JastorException
Create a new instance of openControlledVocabulary. Leaves the model unchanged.

Parameters:
resource - The resource of the openControlledVocabulary
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllopenControlledVocabulary

public static java.util.List getAllopenControlledVocabulary(com.hp.hpl.jena.rdf.model.Model model)
                                                     throws com.ibm.adtech.jastor.JastorException
Return an instance of openControlledVocabulary for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#openControlledVocabulary

Parameters:
model - the Jena Model
Returns:
a List of openControlledVocabulary
Throws:
com.ibm.adtech.jastor.JastorException

createdeltaGprimeO

public static deltaGprimeO createdeltaGprimeO(com.hp.hpl.jena.rdf.model.Resource resource,
                                              com.hp.hpl.jena.rdf.model.Model model)
                                       throws com.ibm.adtech.jastor.JastorException
Create a new instance of deltaGprimeO. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the deltaGprimeO
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createdeltaGprimeO

public static deltaGprimeO createdeltaGprimeO(java.lang.String uri,
                                              com.hp.hpl.jena.rdf.model.Model model)
                                       throws com.ibm.adtech.jastor.JastorException
Create a new instance of deltaGprimeO. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the deltaGprimeO
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getdeltaGprimeO

public static deltaGprimeO getdeltaGprimeO(java.lang.String uri,
                                           com.hp.hpl.jena.rdf.model.Model model)
                                    throws com.ibm.adtech.jastor.JastorException
Create a new instance of deltaGprimeO. Leaves the model unchanged.

Parameters:
uri - The uri of the deltaGprimeO
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getdeltaGprimeO

public static deltaGprimeO getdeltaGprimeO(com.hp.hpl.jena.rdf.model.Resource resource,
                                           com.hp.hpl.jena.rdf.model.Model model)
                                    throws com.ibm.adtech.jastor.JastorException
Create a new instance of deltaGprimeO. Leaves the model unchanged.

Parameters:
resource - The resource of the deltaGprimeO
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAlldeltaGprimeO

public static java.util.List getAlldeltaGprimeO(com.hp.hpl.jena.rdf.model.Model model)
                                         throws com.ibm.adtech.jastor.JastorException
Return an instance of deltaGprimeO for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#deltaGprimeO

Parameters:
model - the Jena Model
Returns:
a List of deltaGprimeO
Throws:
com.ibm.adtech.jastor.JastorException

createpathwayStep

public static pathwayStep createpathwayStep(com.hp.hpl.jena.rdf.model.Resource resource,
                                            com.hp.hpl.jena.rdf.model.Model model)
                                     throws com.ibm.adtech.jastor.JastorException
Create a new instance of pathwayStep. Adds the rdf:type property for the given resource to the model.

Parameters:
resource - The resource of the pathwayStep
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

createpathwayStep

public static pathwayStep createpathwayStep(java.lang.String uri,
                                            com.hp.hpl.jena.rdf.model.Model model)
                                     throws com.ibm.adtech.jastor.JastorException
Create a new instance of pathwayStep. Adds the rdf:type property for the given resource to the model.

Parameters:
uri - The uri of the pathwayStep
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getpathwayStep

public static pathwayStep getpathwayStep(java.lang.String uri,
                                         com.hp.hpl.jena.rdf.model.Model model)
                                  throws com.ibm.adtech.jastor.JastorException
Create a new instance of pathwayStep. Leaves the model unchanged.

Parameters:
uri - The uri of the pathwayStep
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getpathwayStep

public static pathwayStep getpathwayStep(com.hp.hpl.jena.rdf.model.Resource resource,
                                         com.hp.hpl.jena.rdf.model.Model model)
                                  throws com.ibm.adtech.jastor.JastorException
Create a new instance of pathwayStep. Leaves the model unchanged.

Parameters:
resource - The resource of the pathwayStep
model - the Jena Model.
Throws:
com.ibm.adtech.jastor.JastorException

getAllpathwayStep

public static java.util.List getAllpathwayStep(com.hp.hpl.jena.rdf.model.Model model)
                                        throws com.ibm.adtech.jastor.JastorException
Return an instance of pathwayStep for every resource in the model with rdf:Type http://www.biopax.org/release/biopax-level2.owl#pathwayStep

Parameters:
model - the Jena Model
Returns:
a List of pathwayStep
Throws:
com.ibm.adtech.jastor.JastorException

getThing

public static com.ibm.adtech.jastor.Thing getThing(com.hp.hpl.jena.rdf.model.Resource res,
                                                   com.hp.hpl.jena.rdf.model.Model model)
                                            throws com.ibm.adtech.jastor.JastorException
Returns an instance of an interface for the given Resource. The return instance is guaranteed to implement the most specific interface in *some* hierarchy in which the Resource participates. The behavior is unspecified for resources with RDF types from different hierarchies.

Returns:
an instance of Thing
Throws:
com.ibm.adtech.jastor.JastorException

getThing

public static com.ibm.adtech.jastor.Thing getThing(java.lang.String uri,
                                                   com.hp.hpl.jena.rdf.model.Model model)
                                            throws com.ibm.adtech.jastor.JastorException
Returns an instance of an interface for the given Resource URI. The return instance is guaranteed to implement the most specific interface in *some* hierarchy in which the Resource participates. The behavior is unspecified for resources with RDF types from different hierarchies.

Returns:
an instance of Thing
Throws:
com.ibm.adtech.jastor.JastorException

listCompatibleInterfaces

public static java.util.List listCompatibleInterfaces(com.hp.hpl.jena.rdf.model.Resource type)
Return a list of compatible interfaces for the given type. Searches through all ontology classes in the biopax-level2.owl ontology. The list is sorted according to the topological sort of the class hierarchy

Returns:
a List of type java.lang.Class
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