fr.curie.BiNoM.pathways.biopax
Interface confidence

All Superinterfaces:

com.ibm.adtech.jastor.Thing, utilityClass

All Known Implementing Classes:

confidenceImpl

public interface confidence
extends utilityClass, com.ibm.adtech.jastor.Thing

Interface for confidence ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.

(URI: http://www.biopax.org/release/biopax-level2.owl#confidence)

RDF Schema Standard Properties
comment : Definition: Confidence that the containing instance actually occurs or exists in vivo, usually a statistical measure. The xref must contain at least on publication that describes the method used to determine the confidence. There is currently no standard way of describing confidence values, so any string is valid for the confidence value. In the future, a controlled vocabulary of accepted confidence values could become available, in which case it will likely be adopted for use here to describe the value. Examples: The statistical significance of a result, e.g. "p<0.05".^^http://www.w3.org/2001/XMLSchema#string

Field Summary

static com.hp.hpl.jena.rdf.model.Property	CONFIDENCE_DASH_VALUEProperty The Jena Property for CONFIDENCE_DASH_VALUE
static com.hp.hpl.jena.rdf.model.Resource	TYPE The rdf:type for this ontology class
static com.hp.hpl.jena.rdf.model.Property	XREFProperty The Jena Property for XREF

Fields inherited from interface fr.curie.BiNoM.pathways.biopax.utilityClass

COMMENTProperty

Fields inherited from interface com.ibm.adtech.jastor.Thing

copyright

Method Summary

publicationXref	addXREF_aspublicationXref() Adds an anonymous value for the 'XREF' property
publicationXref	addXREF_aspublicationXref(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'XREF' property.
xref	addXREF() Adds an anonymous value for the 'XREF' property
void	addXREF(publicationXref XREF) Adds a value for the 'XREF' property
xref	addXREF(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'XREF' property.
void	addXREF(xref XREF) Adds a value for the 'XREF' property
java.lang.String	getCONFIDENCE_DASH_VALUE() Gets the 'CONFIDENCE_DASH_VALUE' property value
java.util.Iterator	getXREF_aspublicationXref() Get an Iterator the 'XREF' property values.
java.util.Iterator	getXREF() Get an Iterator the 'XREF' property values.
void	removeXREF(publicationXref XREF) Removes a value for the 'XREF' property.
void	removeXREF(xref XREF) Removes a value for the 'XREF' property.
void	setCONFIDENCE_DASH_VALUE(java.lang.String CONFIDENCE_DASH_VALUE) Sets the 'CONFIDENCE_DASH_VALUE' property value

Methods inherited from interface fr.curie.BiNoM.pathways.biopax.utilityClass

addCOMMENT, getCOMMENT, removeCOMMENT

Methods inherited from interface com.ibm.adtech.jastor.Thing

clearCache, isRDFType, listStatements, model, registerListener, removeStatements, resource, unregisterListener, uri

Field Detail

TYPE

static final com.hp.hpl.jena.rdf.model.Resource TYPE

The rdf:type for this ontology class

CONFIDENCE_DASH_VALUEProperty

static final com.hp.hpl.jena.rdf.model.Property CONFIDENCE_DASH_VALUEProperty

The Jena Property for CONFIDENCE_DASH_VALUE

(URI: http://www.biopax.org/release/biopax-level2.owl#CONFIDENCE-VALUE)

RDF Schema Standard Properties
comment : The value of the confidence measure.^^http://www.w3.org/2001/XMLSchema#string

XREFProperty

static final com.hp.hpl.jena.rdf.model.Property XREFProperty

The Jena Property for XREF

(URI: http://www.biopax.org/release/biopax-level2.owl#XREF)

RDF Schema Standard Properties
comment : Values of this property define external cross-references from this entity to entities in external databases.@en

Method Detail

getCONFIDENCE_DASH_VALUE

java.lang.String getCONFIDENCE_DASH_VALUE()
                                          throws com.ibm.adtech.jastor.JastorException

Gets the 'CONFIDENCE_DASH_VALUE' property value

Returns:

String

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

CONFIDENCE_DASH_VALUEProperty

setCONFIDENCE_DASH_VALUE

void setCONFIDENCE_DASH_VALUE(java.lang.String CONFIDENCE_DASH_VALUE)
                              throws com.ibm.adtech.jastor.JastorException

Sets the 'CONFIDENCE_DASH_VALUE' property value

Parameters:

{@link - java.lang.String}

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

CONFIDENCE_DASH_VALUEProperty

getXREF

java.util.Iterator getXREF()
                           throws com.ibm.adtech.jastor.JastorException

Get an Iterator the 'XREF' property values. This Iteartor may be used to remove all such values.

Returns:

Iterator of xref

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

XREFProperty

addXREF

void addXREF(xref XREF)
             throws com.ibm.adtech.jastor.JastorException

Adds a value for the 'XREF' property

Parameters:

The - xref to add

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

XREFProperty

addXREF

xref addXREF()
             throws com.ibm.adtech.jastor.JastorException

Adds an anonymous value for the 'XREF' property

Returns:

The anoymous xref created

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

XREFProperty

addXREF

xref addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
             throws com.ibm.adtech.jastor.JastorException

Adds a value for the 'XREF' property. This method is equivalent constructing a new instance of xref with the factory and calling addXREF(fr.curie.BiNoM.pathways.biopax.xref XREF) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#xref. That is, this method should not be used as a shortcut for creating new objects in the model.

Parameters:

The - om.hp.hpl.jena.rdf.model.Resource to add

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

XREFProperty

removeXREF

void removeXREF(xref XREF)
                throws com.ibm.adtech.jastor.JastorException

Removes a value for the 'XREF' property. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Parameters:

The - xref to remove

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

XREFProperty

getXREF_aspublicationXref

java.util.Iterator getXREF_aspublicationXref()
                                             throws com.ibm.adtech.jastor.JastorException

Get an Iterator the 'XREF' property values. This Iteartor may be used to remove all such values.

Returns:

Iterator of publicationXref

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

XREFProperty

addXREF

void addXREF(publicationXref XREF)
             throws com.ibm.adtech.jastor.JastorException

Adds a value for the 'XREF' property

Parameters:

The - publicationXref to add

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

XREFProperty

addXREF_aspublicationXref

publicationXref addXREF_aspublicationXref()
                                          throws com.ibm.adtech.jastor.JastorException

Adds an anonymous value for the 'XREF' property

Returns:

The anoymous publicationXref created

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

XREFProperty

addXREF_aspublicationXref

publicationXref addXREF_aspublicationXref(com.hp.hpl.jena.rdf.model.Resource resource)
                                          throws com.ibm.adtech.jastor.JastorException

Adds a value for the 'XREF' property. This method is equivalent constructing a new instance of publicationXref with the factory and calling addXREF(fr.curie.BiNoM.pathways.biopax.publicationXref XREF) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#publicationXref. That is, this method should not be used as a shortcut for creating new objects in the model.

Parameters:

The - om.hp.hpl.jena.rdf.model.Resource to add

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

XREFProperty

removeXREF

void removeXREF(publicationXref XREF)
                throws com.ibm.adtech.jastor.JastorException

Removes a value for the 'XREF' property. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Parameters:

The - publicationXref to remove

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

XREFProperty