fr.curie.BiNoM.pathways.biopax
Interface sequenceInterval

All Superinterfaces:

sequenceLocation, com.ibm.adtech.jastor.Thing, utilityClass

All Known Implementing Classes:

sequenceIntervalImpl

public interface sequenceInterval
extends sequenceLocation, com.ibm.adtech.jastor.Thing

Interface for sequenceInterval ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.

(URI: http://www.biopax.org/release/biopax-level2.owl#sequenceInterval)

RDF Schema Standard Properties
comment : Definition: Describes an interval on a sequence. All of the sequence from the begin site to the end site (inclusive) is described, not any subset.^^http://www.w3.org/2001/XMLSchema#string

Field Summary

static com.hp.hpl.jena.rdf.model.Property	SEQUENCE_DASH_INTERVAL_DASH_BEGINProperty The Jena Property for SEQUENCE_DASH_INTERVAL_DASH_BEGIN
static com.hp.hpl.jena.rdf.model.Property	SEQUENCE_DASH_INTERVAL_DASH_ENDProperty The Jena Property for SEQUENCE_DASH_INTERVAL_DASH_END
static com.hp.hpl.jena.rdf.model.Resource	TYPE The rdf:type for this ontology class

Fields inherited from interface fr.curie.BiNoM.pathways.biopax.utilityClass

COMMENTProperty

Fields inherited from interface com.ibm.adtech.jastor.Thing

copyright

Method Summary

sequenceSite	getSEQUENCE_DASH_INTERVAL_DASH_BEGIN() Gets the 'SEQUENCE_DASH_INTERVAL_DASH_BEGIN' property value
sequenceSite	getSEQUENCE_DASH_INTERVAL_DASH_END() Gets the 'SEQUENCE_DASH_INTERVAL_DASH_END' property value
sequenceSite	setSEQUENCE_DASH_INTERVAL_DASH_BEGIN() Sets the 'SEQUENCE_DASH_INTERVAL_DASH_BEGIN' property value to an anonymous node
sequenceSite	setSEQUENCE_DASH_INTERVAL_DASH_BEGIN(com.hp.hpl.jena.rdf.model.Resource resource) Sets the 'SEQUENCE_DASH_INTERVAL_DASH_BEGIN' property value to the given resource, and add's rdf:type properties.
void	setSEQUENCE_DASH_INTERVAL_DASH_BEGIN(sequenceSite SEQUENCE_DASH_INTERVAL_DASH_BEGIN) Sets the 'SEQUENCE_DASH_INTERVAL_DASH_BEGIN' property value
sequenceSite	setSEQUENCE_DASH_INTERVAL_DASH_END() Sets the 'SEQUENCE_DASH_INTERVAL_DASH_END' property value to an anonymous node
sequenceSite	setSEQUENCE_DASH_INTERVAL_DASH_END(com.hp.hpl.jena.rdf.model.Resource resource) Sets the 'SEQUENCE_DASH_INTERVAL_DASH_END' property value to the given resource, and add's rdf:type properties.
void	setSEQUENCE_DASH_INTERVAL_DASH_END(sequenceSite SEQUENCE_DASH_INTERVAL_DASH_END) Sets the 'SEQUENCE_DASH_INTERVAL_DASH_END' property value

Methods inherited from interface fr.curie.BiNoM.pathways.biopax.utilityClass

addCOMMENT, getCOMMENT, removeCOMMENT

Methods inherited from interface com.ibm.adtech.jastor.Thing

clearCache, isRDFType, listStatements, model, registerListener, removeStatements, resource, unregisterListener, uri

Field Detail

TYPE

static final com.hp.hpl.jena.rdf.model.Resource TYPE

The rdf:type for this ontology class

SEQUENCE_DASH_INTERVAL_DASH_BEGINProperty

static final com.hp.hpl.jena.rdf.model.Property SEQUENCE_DASH_INTERVAL_DASH_BEGINProperty

The Jena Property for SEQUENCE_DASH_INTERVAL_DASH_BEGIN

(URI: http://www.biopax.org/release/biopax-level2.owl#SEQUENCE-INTERVAL-BEGIN)

RDF Schema Standard Properties
comment : The begin position of a sequence interval.^^http://www.w3.org/2001/XMLSchema#string

SEQUENCE_DASH_INTERVAL_DASH_ENDProperty

static final com.hp.hpl.jena.rdf.model.Property SEQUENCE_DASH_INTERVAL_DASH_ENDProperty

The Jena Property for SEQUENCE_DASH_INTERVAL_DASH_END

(URI: http://www.biopax.org/release/biopax-level2.owl#SEQUENCE-INTERVAL-END)

RDF Schema Standard Properties
comment : The end position of a sequence interval.^^http://www.w3.org/2001/XMLSchema#string

Method Detail

getSEQUENCE_DASH_INTERVAL_DASH_BEGIN

sequenceSite getSEQUENCE_DASH_INTERVAL_DASH_BEGIN()
                                                  throws com.ibm.adtech.jastor.JastorException

Gets the 'SEQUENCE_DASH_INTERVAL_DASH_BEGIN' property value

Returns:

sequenceSite

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

SEQUENCE_DASH_INTERVAL_DASH_BEGINProperty

setSEQUENCE_DASH_INTERVAL_DASH_BEGIN

void setSEQUENCE_DASH_INTERVAL_DASH_BEGIN(sequenceSite SEQUENCE_DASH_INTERVAL_DASH_BEGIN)
                                          throws com.ibm.adtech.jastor.JastorException

Sets the 'SEQUENCE_DASH_INTERVAL_DASH_BEGIN' property value

Parameters:

{@link - fr.curie.BiNoM.pathways.biopax.sequenceSite}

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

SEQUENCE_DASH_INTERVAL_DASH_BEGINProperty

setSEQUENCE_DASH_INTERVAL_DASH_BEGIN

sequenceSite setSEQUENCE_DASH_INTERVAL_DASH_BEGIN()
                                                  throws com.ibm.adtech.jastor.JastorException

Sets the 'SEQUENCE_DASH_INTERVAL_DASH_BEGIN' property value to an anonymous node

Returns:

sequenceSite, the created value

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

SEQUENCE_DASH_INTERVAL_DASH_BEGINProperty

setSEQUENCE_DASH_INTERVAL_DASH_BEGIN

sequenceSite setSEQUENCE_DASH_INTERVAL_DASH_BEGIN(com.hp.hpl.jena.rdf.model.Resource resource)
                                                  throws com.ibm.adtech.jastor.JastorException

Sets the 'SEQUENCE_DASH_INTERVAL_DASH_BEGIN' property value to the given resource, and add's rdf:type properties. This method is equivalent constructing a new instance of sequenceSite with the factory. and calling setSEQUENCE_DASH_INTERVAL_DASH_BEGIN(fr.curie.BiNoM.pathways.biopax.sequenceSite SEQUENCE_DASH_INTERVAL_DASH_BEGIN) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#sequenceSite. That is, this method should not be used as a shortcut for creating new objects in the model.

Parameters:

{@link - com.hp.hpl.jena.rdf.model.Resource} must not be be null.

Returns:

sequenceSite, the newly created value

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

SEQUENCE_DASH_INTERVAL_DASH_BEGINProperty

getSEQUENCE_DASH_INTERVAL_DASH_END

sequenceSite getSEQUENCE_DASH_INTERVAL_DASH_END()
                                                throws com.ibm.adtech.jastor.JastorException

Gets the 'SEQUENCE_DASH_INTERVAL_DASH_END' property value

Returns:

sequenceSite

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

SEQUENCE_DASH_INTERVAL_DASH_ENDProperty

setSEQUENCE_DASH_INTERVAL_DASH_END

void setSEQUENCE_DASH_INTERVAL_DASH_END(sequenceSite SEQUENCE_DASH_INTERVAL_DASH_END)
                                        throws com.ibm.adtech.jastor.JastorException

Sets the 'SEQUENCE_DASH_INTERVAL_DASH_END' property value

Parameters:

{@link - fr.curie.BiNoM.pathways.biopax.sequenceSite}

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

SEQUENCE_DASH_INTERVAL_DASH_ENDProperty

setSEQUENCE_DASH_INTERVAL_DASH_END

sequenceSite setSEQUENCE_DASH_INTERVAL_DASH_END()
                                                throws com.ibm.adtech.jastor.JastorException

Sets the 'SEQUENCE_DASH_INTERVAL_DASH_END' property value to an anonymous node

Returns:

sequenceSite, the created value

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

SEQUENCE_DASH_INTERVAL_DASH_ENDProperty

setSEQUENCE_DASH_INTERVAL_DASH_END

sequenceSite setSEQUENCE_DASH_INTERVAL_DASH_END(com.hp.hpl.jena.rdf.model.Resource resource)
                                                throws com.ibm.adtech.jastor.JastorException

Sets the 'SEQUENCE_DASH_INTERVAL_DASH_END' property value to the given resource, and add's rdf:type properties. This method is equivalent constructing a new instance of sequenceSite with the factory. and calling setSEQUENCE_DASH_INTERVAL_DASH_END(fr.curie.BiNoM.pathways.biopax.sequenceSite SEQUENCE_DASH_INTERVAL_DASH_END) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#sequenceSite. That is, this method should not be used as a shortcut for creating new objects in the model.

Parameters:

{@link - com.hp.hpl.jena.rdf.model.Resource} must not be be null.

Returns:

sequenceSite, the newly created value

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

SEQUENCE_DASH_INTERVAL_DASH_ENDProperty