fr.curie.BiNoM.pathways.biopax
Interface sequenceParticipant

All Superinterfaces:

physicalEntityParticipant, com.ibm.adtech.jastor.Thing, utilityClass

All Known Implementing Classes:

sequenceParticipantImpl

public interface sequenceParticipant
extends physicalEntityParticipant, com.ibm.adtech.jastor.Thing

Interface for sequenceParticipant ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.

(URI: http://www.biopax.org/release/biopax-level2.owl#sequenceParticipant)

RDF Schema Standard Properties
comment : Definition: A DNA, RNA or protein participant in an interaction. Comment: See physicalEntityParticipant for more documentation.^^http://www.w3.org/2001/XMLSchema#string

Field Summary

static com.hp.hpl.jena.rdf.model.Property	SEQUENCE_DASH_FEATURE_DASH_LISTProperty The Jena Property for SEQUENCE_DASH_FEATURE_DASH_LIST
static com.hp.hpl.jena.rdf.model.Resource	TYPE The rdf:type for this ontology class

Fields inherited from interface fr.curie.BiNoM.pathways.biopax.physicalEntityParticipant

CELLULAR_DASH_LOCATIONProperty, PHYSICAL_DASH_ENTITYProperty, STOICHIOMETRIC_DASH_COEFFICIENTProperty

Fields inherited from interface fr.curie.BiNoM.pathways.biopax.utilityClass

COMMENTProperty

Fields inherited from interface com.ibm.adtech.jastor.Thing

copyright

Method Summary

sequenceFeature	addSEQUENCE_DASH_FEATURE_DASH_LIST() Adds an anonymous value for the 'SEQUENCE_DASH_FEATURE_DASH_LIST' property
sequenceFeature	addSEQUENCE_DASH_FEATURE_DASH_LIST(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'SEQUENCE_DASH_FEATURE_DASH_LIST' property.
void	addSEQUENCE_DASH_FEATURE_DASH_LIST(sequenceFeature SEQUENCE_DASH_FEATURE_DASH_LIST) Adds a value for the 'SEQUENCE_DASH_FEATURE_DASH_LIST' property
java.util.Iterator	getSEQUENCE_DASH_FEATURE_DASH_LIST() Get an Iterator the 'SEQUENCE_DASH_FEATURE_DASH_LIST' property values.
void	removeSEQUENCE_DASH_FEATURE_DASH_LIST(sequenceFeature SEQUENCE_DASH_FEATURE_DASH_LIST) Removes a value for the 'SEQUENCE_DASH_FEATURE_DASH_LIST' property.

Methods inherited from interface fr.curie.BiNoM.pathways.biopax.physicalEntityParticipant

getCELLULAR_DASH_LOCATION, getPHYSICAL_DASH_ENTITY, getSTOICHIOMETRIC_DASH_COEFFICIENT, setCELLULAR_DASH_LOCATION, setCELLULAR_DASH_LOCATION, setCELLULAR_DASH_LOCATION, setPHYSICAL_DASH_ENTITY, setPHYSICAL_DASH_ENTITY, setPHYSICAL_DASH_ENTITY, setSTOICHIOMETRIC_DASH_COEFFICIENT

Methods inherited from interface fr.curie.BiNoM.pathways.biopax.utilityClass

addCOMMENT, getCOMMENT, removeCOMMENT

Methods inherited from interface com.ibm.adtech.jastor.Thing

clearCache, isRDFType, listStatements, model, registerListener, removeStatements, resource, unregisterListener, uri

Field Detail

TYPE

static final com.hp.hpl.jena.rdf.model.Resource TYPE

The rdf:type for this ontology class

SEQUENCE_DASH_FEATURE_DASH_LISTProperty

static final com.hp.hpl.jena.rdf.model.Property SEQUENCE_DASH_FEATURE_DASH_LISTProperty

The Jena Property for SEQUENCE_DASH_FEATURE_DASH_LIST

(URI: http://www.biopax.org/release/biopax-level2.owl#SEQUENCE-FEATURE-LIST)

RDF Schema Standard Properties
comment : Sequence features relevant for the interaction, for example binding domains or modification sites. Warning: this property may be moved into a state class in Level 3.^^http://www.w3.org/2001/XMLSchema#string

Method Detail

getSEQUENCE_DASH_FEATURE_DASH_LIST

java.util.Iterator getSEQUENCE_DASH_FEATURE_DASH_LIST()
                                                      throws com.ibm.adtech.jastor.JastorException

Get an Iterator the 'SEQUENCE_DASH_FEATURE_DASH_LIST' property values. This Iteartor may be used to remove all such values.

Returns:

Iterator of sequenceFeature

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

SEQUENCE_DASH_FEATURE_DASH_LISTProperty

addSEQUENCE_DASH_FEATURE_DASH_LIST

void addSEQUENCE_DASH_FEATURE_DASH_LIST(sequenceFeature SEQUENCE_DASH_FEATURE_DASH_LIST)
                                        throws com.ibm.adtech.jastor.JastorException

Adds a value for the 'SEQUENCE_DASH_FEATURE_DASH_LIST' property

Parameters:

The - sequenceFeature to add

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

SEQUENCE_DASH_FEATURE_DASH_LISTProperty

addSEQUENCE_DASH_FEATURE_DASH_LIST

sequenceFeature addSEQUENCE_DASH_FEATURE_DASH_LIST()
                                                   throws com.ibm.adtech.jastor.JastorException

Adds an anonymous value for the 'SEQUENCE_DASH_FEATURE_DASH_LIST' property

Returns:

The anoymous sequenceFeature created

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

SEQUENCE_DASH_FEATURE_DASH_LISTProperty

addSEQUENCE_DASH_FEATURE_DASH_LIST

sequenceFeature addSEQUENCE_DASH_FEATURE_DASH_LIST(com.hp.hpl.jena.rdf.model.Resource resource)
                                                   throws com.ibm.adtech.jastor.JastorException

Adds a value for the 'SEQUENCE_DASH_FEATURE_DASH_LIST' property. This method is equivalent constructing a new instance of sequenceFeature with the factory and calling addSEQUENCE_DASH_FEATURE_DASH_LIST(fr.curie.BiNoM.pathways.biopax.sequenceFeature SEQUENCE_DASH_FEATURE_DASH_LIST) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#sequenceFeature. That is, this method should not be used as a shortcut for creating new objects in the model.

Parameters:

The - om.hp.hpl.jena.rdf.model.Resource to add

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

SEQUENCE_DASH_FEATURE_DASH_LISTProperty

removeSEQUENCE_DASH_FEATURE_DASH_LIST

void removeSEQUENCE_DASH_FEATURE_DASH_LIST(sequenceFeature SEQUENCE_DASH_FEATURE_DASH_LIST)
                                           throws com.ibm.adtech.jastor.JastorException

Removes a value for the 'SEQUENCE_DASH_FEATURE_DASH_LIST' property. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Parameters:

The - sequenceFeature to remove

Throws:

com.ibm.adtech.jastor.JastorException

See Also:

SEQUENCE_DASH_FEATURE_DASH_LISTProperty