fr.curie.BiNoM.pathways.biopax
Class sequenceParticipantImpl

java.lang.Object
  extended by com.hp.hpl.jena.rdf.listeners.StatementListener
      extended by com.ibm.adtech.jastor.ThingImpl
          extended by fr.curie.BiNoM.pathways.biopax.sequenceParticipantImpl
All Implemented Interfaces:
com.hp.hpl.jena.rdf.model.ModelChangedListener, com.ibm.adtech.jastor.Thing, physicalEntityParticipant, sequenceParticipant, utilityClass

public class sequenceParticipantImpl
extends com.ibm.adtech.jastor.ThingImpl
implements sequenceParticipant

Implementation of sequenceParticipant Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.

(URI: http://www.biopax.org/release/biopax-level2.owl#sequenceParticipant)



Field Summary
 
Fields inherited from class com.ibm.adtech.jastor.ThingImpl
copyright
 
Fields inherited from interface fr.curie.BiNoM.pathways.biopax.sequenceParticipant
TYPE
 
Fields inherited from interface com.ibm.adtech.jastor.Thing
copyright
 
Method Summary
 void addCOMMENT(java.lang.String COMMENT)
          Add a 'COMMENT' property value
 void addedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)
           
 sequenceFeature addSEQUENCE_DASH_FEATURE_DASH_LIST()
          Adds an anonymous value for the 'SEQUENCE_DASH_FEATURE_DASH_LIST' property
 sequenceFeature addSEQUENCE_DASH_FEATURE_DASH_LIST(com.hp.hpl.jena.rdf.model.Resource resource)
          Adds a value for the 'SEQUENCE_DASH_FEATURE_DASH_LIST' property.
 void addSEQUENCE_DASH_FEATURE_DASH_LIST(sequenceFeature SEQUENCE_DASH_FEATURE_DASH_LIST)
          Adds a value for the 'SEQUENCE_DASH_FEATURE_DASH_LIST' property
 void clearCache()
           
 openControlledVocabulary getCELLULAR_DASH_LOCATION()
          Gets the 'CELLULAR_DASH_LOCATION' property value
 java.util.Iterator getCOMMENT()
          Iterates through the 'COMMENT' property values.
 physicalEntity getPHYSICAL_DASH_ENTITY()
          Gets the 'PHYSICAL_DASH_ENTITY' property value
 java.util.Iterator getSEQUENCE_DASH_FEATURE_DASH_LIST()
          Get an Iterator the 'SEQUENCE_DASH_FEATURE_DASH_LIST' property values.
 java.lang.Double getSTOICHIOMETRIC_DASH_COEFFICIENT()
          Gets the 'STOICHIOMETRIC_DASH_COEFFICIENT' property value
 java.util.List listStatements()
           
 void registerListener(com.ibm.adtech.jastor.ThingListener listener)
           
 void removeCOMMENT(java.lang.String COMMENT)
          Remove a 'COMMENT' property value.
 void removedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)
           
 void removeSEQUENCE_DASH_FEATURE_DASH_LIST(sequenceFeature SEQUENCE_DASH_FEATURE_DASH_LIST)
          Removes a value for the 'SEQUENCE_DASH_FEATURE_DASH_LIST' property.
 openControlledVocabulary setCELLULAR_DASH_LOCATION()
          Sets the 'CELLULAR_DASH_LOCATION' property value to an anonymous node
 void setCELLULAR_DASH_LOCATION(openControlledVocabulary CELLULAR_DASH_LOCATION)
          Sets the 'CELLULAR_DASH_LOCATION' property value
 openControlledVocabulary setCELLULAR_DASH_LOCATION(com.hp.hpl.jena.rdf.model.Resource resource)
          Sets the 'CELLULAR_DASH_LOCATION' property value to the given resource, and add's rdf:type properties.
 physicalEntity setPHYSICAL_DASH_ENTITY()
          Sets the 'PHYSICAL_DASH_ENTITY' property value to an anonymous node
 void setPHYSICAL_DASH_ENTITY(physicalEntity PHYSICAL_DASH_ENTITY)
          Sets the 'PHYSICAL_DASH_ENTITY' property value
 physicalEntity setPHYSICAL_DASH_ENTITY(com.hp.hpl.jena.rdf.model.Resource resource)
          Sets the 'PHYSICAL_DASH_ENTITY' property value to the given resource, and add's rdf:type properties.
 void setSTOICHIOMETRIC_DASH_COEFFICIENT(java.lang.Double STOICHIOMETRIC_DASH_COEFFICIENT)
          Sets the 'STOICHIOMETRIC_DASH_COEFFICIENT' property value
 void unregisterListener(com.ibm.adtech.jastor.ThingListener listener)
           
 
Methods inherited from class com.ibm.adtech.jastor.ThingImpl
equals, isRDFType, model, removeStatements, resource, toString, uri
 
Methods inherited from class com.hp.hpl.jena.rdf.listeners.StatementListener
addedStatements, addedStatements, addedStatements, addedStatements, notifyEvent, removedStatements, removedStatements, removedStatements, removedStatements
 
Methods inherited from class java.lang.Object
getClass, hashCode, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface com.ibm.adtech.jastor.Thing
isRDFType, model, removeStatements, resource, uri
 

Method Detail

listStatements

public java.util.List listStatements()
Specified by:
listStatements in interface com.ibm.adtech.jastor.Thing
Overrides:
listStatements in class com.ibm.adtech.jastor.ThingImpl

clearCache

public void clearCache()
Specified by:
clearCache in interface com.ibm.adtech.jastor.Thing
Overrides:
clearCache in class com.ibm.adtech.jastor.ThingImpl

getCOMMENT

public java.util.Iterator getCOMMENT()
                              throws com.ibm.adtech.jastor.JastorException
Description copied from interface: utilityClass
Iterates through the 'COMMENT' property values. This Iteartor may be used to remove all such values.

Specified by:
getCOMMENT in interface utilityClass
Returns:
Iterator of String
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
utilityClass.COMMENTProperty

addCOMMENT

public void addCOMMENT(java.lang.String COMMENT)
                throws com.ibm.adtech.jastor.JastorException
Description copied from interface: utilityClass
Add a 'COMMENT' property value

Specified by:
addCOMMENT in interface utilityClass
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
utilityClass.COMMENTProperty

removeCOMMENT

public void removeCOMMENT(java.lang.String COMMENT)
                   throws com.ibm.adtech.jastor.JastorException
Description copied from interface: utilityClass
Remove a 'COMMENT' property value. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeCOMMENT in interface utilityClass
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
utilityClass.COMMENTProperty

getPHYSICAL_DASH_ENTITY

public physicalEntity getPHYSICAL_DASH_ENTITY()
                                       throws com.ibm.adtech.jastor.JastorException
Description copied from interface: physicalEntityParticipant
Gets the 'PHYSICAL_DASH_ENTITY' property value

Specified by:
getPHYSICAL_DASH_ENTITY in interface physicalEntityParticipant
Returns:
physicalEntity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
physicalEntityParticipant.PHYSICAL_DASH_ENTITYProperty

setPHYSICAL_DASH_ENTITY

public void setPHYSICAL_DASH_ENTITY(physicalEntity PHYSICAL_DASH_ENTITY)
                             throws com.ibm.adtech.jastor.JastorException
Description copied from interface: physicalEntityParticipant
Sets the 'PHYSICAL_DASH_ENTITY' property value

Specified by:
setPHYSICAL_DASH_ENTITY in interface physicalEntityParticipant
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
physicalEntityParticipant.PHYSICAL_DASH_ENTITYProperty

setPHYSICAL_DASH_ENTITY

public physicalEntity setPHYSICAL_DASH_ENTITY()
                                       throws com.ibm.adtech.jastor.JastorException
Description copied from interface: physicalEntityParticipant
Sets the 'PHYSICAL_DASH_ENTITY' property value to an anonymous node

Specified by:
setPHYSICAL_DASH_ENTITY in interface physicalEntityParticipant
Returns:
physicalEntity, the created value
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
physicalEntityParticipant.PHYSICAL_DASH_ENTITYProperty

setPHYSICAL_DASH_ENTITY

public physicalEntity setPHYSICAL_DASH_ENTITY(com.hp.hpl.jena.rdf.model.Resource resource)
                                       throws com.ibm.adtech.jastor.JastorException
Description copied from interface: physicalEntityParticipant
Sets the 'PHYSICAL_DASH_ENTITY' property value to the given resource, and add's rdf:type properties. This method is equivalent constructing a new instance of physicalEntity with the factory. and calling setPHYSICAL_DASH_ENTITY(fr.curie.BiNoM.pathways.biopax.physicalEntity PHYSICAL_DASH_ENTITY) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#physicalEntity. That is, this method should not be used as a shortcut for creating new objects in the model.

Specified by:
setPHYSICAL_DASH_ENTITY in interface physicalEntityParticipant
Returns:
physicalEntity, the newly created value
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
physicalEntityParticipant.PHYSICAL_DASH_ENTITYProperty

getSTOICHIOMETRIC_DASH_COEFFICIENT

public java.lang.Double getSTOICHIOMETRIC_DASH_COEFFICIENT()
                                                    throws com.ibm.adtech.jastor.JastorException
Description copied from interface: physicalEntityParticipant
Gets the 'STOICHIOMETRIC_DASH_COEFFICIENT' property value

Specified by:
getSTOICHIOMETRIC_DASH_COEFFICIENT in interface physicalEntityParticipant
Returns:
Double
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
physicalEntityParticipant.STOICHIOMETRIC_DASH_COEFFICIENTProperty

setSTOICHIOMETRIC_DASH_COEFFICIENT

public void setSTOICHIOMETRIC_DASH_COEFFICIENT(java.lang.Double STOICHIOMETRIC_DASH_COEFFICIENT)
                                        throws com.ibm.adtech.jastor.JastorException
Description copied from interface: physicalEntityParticipant
Sets the 'STOICHIOMETRIC_DASH_COEFFICIENT' property value

Specified by:
setSTOICHIOMETRIC_DASH_COEFFICIENT in interface physicalEntityParticipant
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
physicalEntityParticipant.STOICHIOMETRIC_DASH_COEFFICIENTProperty

getCELLULAR_DASH_LOCATION

public openControlledVocabulary getCELLULAR_DASH_LOCATION()
                                                   throws com.ibm.adtech.jastor.JastorException
Description copied from interface: physicalEntityParticipant
Gets the 'CELLULAR_DASH_LOCATION' property value

Specified by:
getCELLULAR_DASH_LOCATION in interface physicalEntityParticipant
Returns:
openControlledVocabulary
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
physicalEntityParticipant.CELLULAR_DASH_LOCATIONProperty

setCELLULAR_DASH_LOCATION

public void setCELLULAR_DASH_LOCATION(openControlledVocabulary CELLULAR_DASH_LOCATION)
                               throws com.ibm.adtech.jastor.JastorException
Description copied from interface: physicalEntityParticipant
Sets the 'CELLULAR_DASH_LOCATION' property value

Specified by:
setCELLULAR_DASH_LOCATION in interface physicalEntityParticipant
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
physicalEntityParticipant.CELLULAR_DASH_LOCATIONProperty

setCELLULAR_DASH_LOCATION

public openControlledVocabulary setCELLULAR_DASH_LOCATION()
                                                   throws com.ibm.adtech.jastor.JastorException
Description copied from interface: physicalEntityParticipant
Sets the 'CELLULAR_DASH_LOCATION' property value to an anonymous node

Specified by:
setCELLULAR_DASH_LOCATION in interface physicalEntityParticipant
Returns:
openControlledVocabulary, the created value
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
physicalEntityParticipant.CELLULAR_DASH_LOCATIONProperty

setCELLULAR_DASH_LOCATION

public openControlledVocabulary setCELLULAR_DASH_LOCATION(com.hp.hpl.jena.rdf.model.Resource resource)
                                                   throws com.ibm.adtech.jastor.JastorException
Description copied from interface: physicalEntityParticipant
Sets the 'CELLULAR_DASH_LOCATION' property value to the given resource, and add's rdf:type properties. This method is equivalent constructing a new instance of openControlledVocabulary with the factory. and calling setCELLULAR_DASH_LOCATION(fr.curie.BiNoM.pathways.biopax.openControlledVocabulary CELLULAR_DASH_LOCATION) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#openControlledVocabulary. That is, this method should not be used as a shortcut for creating new objects in the model.

Specified by:
setCELLULAR_DASH_LOCATION in interface physicalEntityParticipant
Returns:
openControlledVocabulary, the newly created value
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
physicalEntityParticipant.CELLULAR_DASH_LOCATIONProperty

getSEQUENCE_DASH_FEATURE_DASH_LIST

public java.util.Iterator getSEQUENCE_DASH_FEATURE_DASH_LIST()
                                                      throws com.ibm.adtech.jastor.JastorException
Description copied from interface: sequenceParticipant
Get an Iterator the 'SEQUENCE_DASH_FEATURE_DASH_LIST' property values. This Iteartor may be used to remove all such values.

Specified by:
getSEQUENCE_DASH_FEATURE_DASH_LIST in interface sequenceParticipant
Returns:
Iterator of sequenceFeature
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
sequenceParticipant.SEQUENCE_DASH_FEATURE_DASH_LISTProperty

addSEQUENCE_DASH_FEATURE_DASH_LIST

public void addSEQUENCE_DASH_FEATURE_DASH_LIST(sequenceFeature SEQUENCE_DASH_FEATURE_DASH_LIST)
                                        throws com.ibm.adtech.jastor.JastorException
Description copied from interface: sequenceParticipant
Adds a value for the 'SEQUENCE_DASH_FEATURE_DASH_LIST' property

Specified by:
addSEQUENCE_DASH_FEATURE_DASH_LIST in interface sequenceParticipant
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
sequenceParticipant.SEQUENCE_DASH_FEATURE_DASH_LISTProperty

addSEQUENCE_DASH_FEATURE_DASH_LIST

public sequenceFeature addSEQUENCE_DASH_FEATURE_DASH_LIST()
                                                   throws com.ibm.adtech.jastor.JastorException
Description copied from interface: sequenceParticipant
Adds an anonymous value for the 'SEQUENCE_DASH_FEATURE_DASH_LIST' property

Specified by:
addSEQUENCE_DASH_FEATURE_DASH_LIST in interface sequenceParticipant
Returns:
The anoymous sequenceFeature created
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
sequenceParticipant.SEQUENCE_DASH_FEATURE_DASH_LISTProperty

addSEQUENCE_DASH_FEATURE_DASH_LIST

public sequenceFeature addSEQUENCE_DASH_FEATURE_DASH_LIST(com.hp.hpl.jena.rdf.model.Resource resource)
                                                   throws com.ibm.adtech.jastor.JastorException
Description copied from interface: sequenceParticipant
Adds a value for the 'SEQUENCE_DASH_FEATURE_DASH_LIST' property. This method is equivalent constructing a new instance of sequenceFeature with the factory and calling addSEQUENCE_DASH_FEATURE_DASH_LIST(fr.curie.BiNoM.pathways.biopax.sequenceFeature SEQUENCE_DASH_FEATURE_DASH_LIST) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#sequenceFeature. That is, this method should not be used as a shortcut for creating new objects in the model.

Specified by:
addSEQUENCE_DASH_FEATURE_DASH_LIST in interface sequenceParticipant
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
sequenceParticipant.SEQUENCE_DASH_FEATURE_DASH_LISTProperty

removeSEQUENCE_DASH_FEATURE_DASH_LIST

public void removeSEQUENCE_DASH_FEATURE_DASH_LIST(sequenceFeature SEQUENCE_DASH_FEATURE_DASH_LIST)
                                           throws com.ibm.adtech.jastor.JastorException
Description copied from interface: sequenceParticipant
Removes a value for the 'SEQUENCE_DASH_FEATURE_DASH_LIST' property. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeSEQUENCE_DASH_FEATURE_DASH_LIST in interface sequenceParticipant
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
sequenceParticipant.SEQUENCE_DASH_FEATURE_DASH_LISTProperty

registerListener

public void registerListener(com.ibm.adtech.jastor.ThingListener listener)
Specified by:
registerListener in interface com.ibm.adtech.jastor.Thing
Overrides:
registerListener in class com.ibm.adtech.jastor.ThingImpl

unregisterListener

public void unregisterListener(com.ibm.adtech.jastor.ThingListener listener)
Specified by:
unregisterListener in interface com.ibm.adtech.jastor.Thing
Overrides:
unregisterListener in class com.ibm.adtech.jastor.ThingImpl

addedStatement

public void addedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)
Specified by:
addedStatement in interface com.hp.hpl.jena.rdf.model.ModelChangedListener
Overrides:
addedStatement in class com.hp.hpl.jena.rdf.listeners.StatementListener

removedStatement

public void removedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)
Specified by:
removedStatement in interface com.hp.hpl.jena.rdf.model.ModelChangedListener
Overrides:
removedStatement in class com.hp.hpl.jena.rdf.listeners.StatementListener