fr.curie.BiNoM.pathways.biopax
Class transportWithBiochemicalReactionImpl

java.lang.Object
  extended by com.hp.hpl.jena.rdf.listeners.StatementListener
      extended by com.ibm.adtech.jastor.ThingImpl
          extended by fr.curie.BiNoM.pathways.biopax.transportWithBiochemicalReactionImpl
All Implemented Interfaces:
com.hp.hpl.jena.rdf.model.ModelChangedListener, com.ibm.adtech.jastor.Thing, biochemicalReaction, conversion, entity, interaction, physicalInteraction, transport, transportWithBiochemicalReaction

public class transportWithBiochemicalReactionImpl
extends com.ibm.adtech.jastor.ThingImpl
implements transportWithBiochemicalReaction

Implementation of transportWithBiochemicalReaction Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.

(URI: http://www.biopax.org/release/biopax-level2.owl#transportWithBiochemicalReaction)



Field Summary
 
Fields inherited from class com.ibm.adtech.jastor.ThingImpl
copyright
 
Fields inherited from interface fr.curie.BiNoM.pathways.biopax.transportWithBiochemicalReaction
TYPE
 
Method Summary
 void addAVAILABILITY(java.lang.String AVAILABILITY)
          Add a 'AVAILABILITY' property value
 void addCOMMENT(java.lang.String COMMENT)
          Add a 'COMMENT' property value
 dataSource addDATA_DASH_SOURCE()
          Adds an anonymous value for the 'DATA_DASH_SOURCE' property
 void addDATA_DASH_SOURCE(dataSource DATA_DASH_SOURCE)
          Adds a value for the 'DATA_DASH_SOURCE' property
 dataSource addDATA_DASH_SOURCE(com.hp.hpl.jena.rdf.model.Resource resource)
          Adds a value for the 'DATA_DASH_SOURCE' property.
 deltaGprimeO addDELTA_DASH_G()
          Adds an anonymous value for the 'DELTA_DASH_G' property
 void addDELTA_DASH_G(deltaGprimeO DELTA_DASH_G)
          Adds a value for the 'DELTA_DASH_G' property
 deltaGprimeO addDELTA_DASH_G(com.hp.hpl.jena.rdf.model.Resource resource)
          Adds a value for the 'DELTA_DASH_G' property.
 void addDELTA_DASH_H(java.lang.Double DELTA_DASH_H)
          Add a 'DELTA_DASH_H' property value
 void addDELTA_DASH_S(java.lang.Double DELTA_DASH_S)
          Add a 'DELTA_DASH_S' property value
 void addEC_DASH_NUMBER(java.lang.String EC_DASH_NUMBER)
          Add a 'EC_DASH_NUMBER' property value
 void addedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)
           
 evidence addEVIDENCE()
          Adds an anonymous value for the 'EVIDENCE' property
 void addEVIDENCE(evidence EVIDENCE)
          Adds a value for the 'EVIDENCE' property
 evidence addEVIDENCE(com.hp.hpl.jena.rdf.model.Resource resource)
          Adds a value for the 'EVIDENCE' property.
 openControlledVocabulary addINTERACTION_DASH_TYPE()
          Adds an anonymous value for the 'INTERACTION_DASH_TYPE' property
 void addINTERACTION_DASH_TYPE(openControlledVocabulary INTERACTION_DASH_TYPE)
          Adds a value for the 'INTERACTION_DASH_TYPE' property
 openControlledVocabulary addINTERACTION_DASH_TYPE(com.hp.hpl.jena.rdf.model.Resource resource)
          Adds a value for the 'INTERACTION_DASH_TYPE' property.
 kPrime addKEQ()
          Adds an anonymous value for the 'KEQ' property
 void addKEQ(kPrime KEQ)
          Adds a value for the 'KEQ' property
 kPrime addKEQ(com.hp.hpl.jena.rdf.model.Resource resource)
          Adds a value for the 'KEQ' property.
 physicalEntityParticipant addLEFT()
          Adds an anonymous value for the 'LEFT' property
 void addLEFT(physicalEntityParticipant LEFT)
          Adds a value for the 'LEFT' property
 physicalEntityParticipant addLEFT(com.hp.hpl.jena.rdf.model.Resource resource)
          Adds a value for the 'LEFT' property.
 entity addPARTICIPANTS_asentity()
          Adds an anonymous value for the 'PARTICIPANTS' property
 entity addPARTICIPANTS_asentity(com.hp.hpl.jena.rdf.model.Resource resource)
          Adds a value for the 'PARTICIPANTS' property.
 physicalEntityParticipant addPARTICIPANTS_asphysicalEntityParticipant()
          Adds an anonymous value for the 'PARTICIPANTS' property
 physicalEntityParticipant addPARTICIPANTS_asphysicalEntityParticipant(com.hp.hpl.jena.rdf.model.Resource resource)
          Adds a value for the 'PARTICIPANTS' property.
 void addPARTICIPANTS(entity PARTICIPANTS)
          Adds a value for the 'PARTICIPANTS' property
 void addPARTICIPANTS(physicalEntityParticipant PARTICIPANTS)
          Adds a value for the 'PARTICIPANTS' property
 physicalEntityParticipant addRIGHT()
          Adds an anonymous value for the 'RIGHT' property
 void addRIGHT(physicalEntityParticipant RIGHT)
          Adds a value for the 'RIGHT' property
 physicalEntityParticipant addRIGHT(com.hp.hpl.jena.rdf.model.Resource resource)
          Adds a value for the 'RIGHT' property.
 void addSYNONYMS(java.lang.String SYNONYMS)
          Add a 'SYNONYMS' property value
 xref addXREF()
          Adds an anonymous value for the 'XREF' property
 xref addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
          Adds a value for the 'XREF' property.
 void addXREF(xref XREF)
          Adds a value for the 'XREF' property
 void clearCache()
           
 java.util.Iterator getAVAILABILITY()
          Iterates through the 'AVAILABILITY' property values.
 java.util.Iterator getCOMMENT()
          Iterates through the 'COMMENT' property values.
 java.util.Iterator getDATA_DASH_SOURCE()
          Get an Iterator the 'DATA_DASH_SOURCE' property values.
 java.util.Iterator getDELTA_DASH_G()
          Get an Iterator the 'DELTA_DASH_G' property values.
 java.util.Iterator getDELTA_DASH_H()
          Iterates through the 'DELTA_DASH_H' property values.
 java.util.Iterator getDELTA_DASH_S()
          Iterates through the 'DELTA_DASH_S' property values.
 java.util.Iterator getEC_DASH_NUMBER()
          Iterates through the 'EC_DASH_NUMBER' property values.
 java.util.Iterator getEVIDENCE()
          Get an Iterator the 'EVIDENCE' property values.
 java.util.Iterator getINTERACTION_DASH_TYPE()
          Get an Iterator the 'INTERACTION_DASH_TYPE' property values.
 java.util.Iterator getKEQ()
          Get an Iterator the 'KEQ' property values.
 java.util.Iterator getLEFT()
          Get an Iterator the 'LEFT' property values.
 java.lang.String getNAME()
          Gets the 'NAME' property value
 java.util.Iterator getPARTICIPANTS_asentity()
          Get an Iterator the 'PARTICIPANTS' property values.
 java.util.Iterator getPARTICIPANTS_asphysicalEntityParticipant()
          Get an Iterator the 'PARTICIPANTS' property values.
 java.util.Iterator getRIGHT()
          Get an Iterator the 'RIGHT' property values.
 java.lang.String getSHORT_DASH_NAME()
          Gets the 'SHORT_DASH_NAME' property value
 java.lang.String getSPONTANEOUS()
          Gets the 'SPONTANEOUS' property value
 java.util.Iterator getSYNONYMS()
          Iterates through the 'SYNONYMS' property values.
 java.util.Iterator getXREF()
          Get an Iterator the 'XREF' property values.
 java.util.List listStatements()
           
 void registerListener(com.ibm.adtech.jastor.ThingListener listener)
           
 void removeAVAILABILITY(java.lang.String AVAILABILITY)
          Remove a 'AVAILABILITY' property value.
 void removeCOMMENT(java.lang.String COMMENT)
          Remove a 'COMMENT' property value.
 void removeDATA_DASH_SOURCE(dataSource DATA_DASH_SOURCE)
          Removes a value for the 'DATA_DASH_SOURCE' property.
 void removeDELTA_DASH_G(deltaGprimeO DELTA_DASH_G)
          Removes a value for the 'DELTA_DASH_G' property.
 void removeDELTA_DASH_H(java.lang.Double DELTA_DASH_H)
          Remove a 'DELTA_DASH_H' property value.
 void removeDELTA_DASH_S(java.lang.Double DELTA_DASH_S)
          Remove a 'DELTA_DASH_S' property value.
 void removedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)
           
 void removeEC_DASH_NUMBER(java.lang.String EC_DASH_NUMBER)
          Remove a 'EC_DASH_NUMBER' property value.
 void removeEVIDENCE(evidence EVIDENCE)
          Removes a value for the 'EVIDENCE' property.
 void removeINTERACTION_DASH_TYPE(openControlledVocabulary INTERACTION_DASH_TYPE)
          Removes a value for the 'INTERACTION_DASH_TYPE' property.
 void removeKEQ(kPrime KEQ)
          Removes a value for the 'KEQ' property.
 void removeLEFT(physicalEntityParticipant LEFT)
          Removes a value for the 'LEFT' property.
 void removePARTICIPANTS(entity PARTICIPANTS)
          Removes a value for the 'PARTICIPANTS' property.
 void removePARTICIPANTS(physicalEntityParticipant PARTICIPANTS)
          Removes a value for the 'PARTICIPANTS' property.
 void removeRIGHT(physicalEntityParticipant RIGHT)
          Removes a value for the 'RIGHT' property.
 void removeSYNONYMS(java.lang.String SYNONYMS)
          Remove a 'SYNONYMS' property value.
 void removeXREF(xref XREF)
          Removes a value for the 'XREF' property.
 void setNAME(java.lang.String NAME)
          Sets the 'NAME' property value
 void setSHORT_DASH_NAME(java.lang.String SHORT_DASH_NAME)
          Sets the 'SHORT_DASH_NAME' property value
 void setSPONTANEOUS(java.lang.String SPONTANEOUS)
          Sets the 'SPONTANEOUS' property value
 void unregisterListener(com.ibm.adtech.jastor.ThingListener listener)
           
 
Methods inherited from class com.ibm.adtech.jastor.ThingImpl
equals, isRDFType, model, removeStatements, resource, toString, uri
 
Methods inherited from class com.hp.hpl.jena.rdf.listeners.StatementListener
addedStatements, addedStatements, addedStatements, addedStatements, notifyEvent, removedStatements, removedStatements, removedStatements, removedStatements
 
Methods inherited from class java.lang.Object
getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Method Detail

listStatements

public java.util.List listStatements()
Specified by:
listStatements in interface com.ibm.adtech.jastor.Thing
Overrides:
listStatements in class com.ibm.adtech.jastor.ThingImpl

clearCache

public void clearCache()
Specified by:
clearCache in interface com.ibm.adtech.jastor.Thing
Overrides:
clearCache in class com.ibm.adtech.jastor.ThingImpl

getDATA_DASH_SOURCE

public java.util.Iterator getDATA_DASH_SOURCE()
                                       throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Get an Iterator the 'DATA_DASH_SOURCE' property values. This Iteartor may be used to remove all such values.

Specified by:
getDATA_DASH_SOURCE in interface entity
Returns:
Iterator of dataSource
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.DATA_DASH_SOURCEProperty

addDATA_DASH_SOURCE

public void addDATA_DASH_SOURCE(dataSource DATA_DASH_SOURCE)
                         throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Adds a value for the 'DATA_DASH_SOURCE' property

Specified by:
addDATA_DASH_SOURCE in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.DATA_DASH_SOURCEProperty

addDATA_DASH_SOURCE

public dataSource addDATA_DASH_SOURCE()
                               throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Adds an anonymous value for the 'DATA_DASH_SOURCE' property

Specified by:
addDATA_DASH_SOURCE in interface entity
Returns:
The anoymous dataSource created
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.DATA_DASH_SOURCEProperty

addDATA_DASH_SOURCE

public dataSource addDATA_DASH_SOURCE(com.hp.hpl.jena.rdf.model.Resource resource)
                               throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Adds a value for the 'DATA_DASH_SOURCE' property. This method is equivalent constructing a new instance of dataSource with the factory and calling addDATA_DASH_SOURCE(fr.curie.BiNoM.pathways.biopax.dataSource DATA_DASH_SOURCE) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#dataSource. That is, this method should not be used as a shortcut for creating new objects in the model.

Specified by:
addDATA_DASH_SOURCE in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.DATA_DASH_SOURCEProperty

removeDATA_DASH_SOURCE

public void removeDATA_DASH_SOURCE(dataSource DATA_DASH_SOURCE)
                            throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Removes a value for the 'DATA_DASH_SOURCE' property. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeDATA_DASH_SOURCE in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.DATA_DASH_SOURCEProperty

getAVAILABILITY

public java.util.Iterator getAVAILABILITY()
                                   throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Iterates through the 'AVAILABILITY' property values. This Iteartor may be used to remove all such values.

Specified by:
getAVAILABILITY in interface entity
Returns:
Iterator of String
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.AVAILABILITYProperty

addAVAILABILITY

public void addAVAILABILITY(java.lang.String AVAILABILITY)
                     throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Add a 'AVAILABILITY' property value

Specified by:
addAVAILABILITY in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.AVAILABILITYProperty

removeAVAILABILITY

public void removeAVAILABILITY(java.lang.String AVAILABILITY)
                        throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Remove a 'AVAILABILITY' property value. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeAVAILABILITY in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.AVAILABILITYProperty

getCOMMENT

public java.util.Iterator getCOMMENT()
                              throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Iterates through the 'COMMENT' property values. This Iteartor may be used to remove all such values.

Specified by:
getCOMMENT in interface entity
Returns:
Iterator of String
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.COMMENTProperty

addCOMMENT

public void addCOMMENT(java.lang.String COMMENT)
                throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Add a 'COMMENT' property value

Specified by:
addCOMMENT in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.COMMENTProperty

removeCOMMENT

public void removeCOMMENT(java.lang.String COMMENT)
                   throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Remove a 'COMMENT' property value. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeCOMMENT in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.COMMENTProperty

getSHORT_DASH_NAME

public java.lang.String getSHORT_DASH_NAME()
                                    throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Gets the 'SHORT_DASH_NAME' property value

Specified by:
getSHORT_DASH_NAME in interface entity
Returns:
String
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.SHORT_DASH_NAMEProperty

setSHORT_DASH_NAME

public void setSHORT_DASH_NAME(java.lang.String SHORT_DASH_NAME)
                        throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Sets the 'SHORT_DASH_NAME' property value

Specified by:
setSHORT_DASH_NAME in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.SHORT_DASH_NAMEProperty

getSYNONYMS

public java.util.Iterator getSYNONYMS()
                               throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Iterates through the 'SYNONYMS' property values. This Iteartor may be used to remove all such values.

Specified by:
getSYNONYMS in interface entity
Returns:
Iterator of String
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.SYNONYMSProperty

addSYNONYMS

public void addSYNONYMS(java.lang.String SYNONYMS)
                 throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Add a 'SYNONYMS' property value

Specified by:
addSYNONYMS in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.SYNONYMSProperty

removeSYNONYMS

public void removeSYNONYMS(java.lang.String SYNONYMS)
                    throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Remove a 'SYNONYMS' property value. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeSYNONYMS in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.SYNONYMSProperty

getNAME

public java.lang.String getNAME()
                         throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Gets the 'NAME' property value

Specified by:
getNAME in interface entity
Returns:
String
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.NAMEProperty

setNAME

public void setNAME(java.lang.String NAME)
             throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Sets the 'NAME' property value

Specified by:
setNAME in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.NAMEProperty

getXREF

public java.util.Iterator getXREF()
                           throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Get an Iterator the 'XREF' property values. This Iteartor may be used to remove all such values.

Specified by:
getXREF in interface entity
Returns:
Iterator of xref
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.XREFProperty

addXREF

public void addXREF(xref XREF)
             throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Adds a value for the 'XREF' property

Specified by:
addXREF in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.XREFProperty

addXREF

public xref addXREF()
             throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Adds an anonymous value for the 'XREF' property

Specified by:
addXREF in interface entity
Returns:
The anoymous xref created
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.XREFProperty

addXREF

public xref addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
             throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Adds a value for the 'XREF' property. This method is equivalent constructing a new instance of xref with the factory and calling addXREF(fr.curie.BiNoM.pathways.biopax.xref XREF) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#xref. That is, this method should not be used as a shortcut for creating new objects in the model.

Specified by:
addXREF in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.XREFProperty

removeXREF

public void removeXREF(xref XREF)
                throws com.ibm.adtech.jastor.JastorException
Description copied from interface: entity
Removes a value for the 'XREF' property. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeXREF in interface entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
entity.XREFProperty

getPARTICIPANTS_asphysicalEntityParticipant

public java.util.Iterator getPARTICIPANTS_asphysicalEntityParticipant()
                                                               throws com.ibm.adtech.jastor.JastorException
Description copied from interface: conversion
Get an Iterator the 'PARTICIPANTS' property values. This Iteartor may be used to remove all such values.

Specified by:
getPARTICIPANTS_asphysicalEntityParticipant in interface conversion
Specified by:
getPARTICIPANTS_asphysicalEntityParticipant in interface interaction
Specified by:
getPARTICIPANTS_asphysicalEntityParticipant in interface physicalInteraction
Returns:
Iterator of physicalEntityParticipant
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
interaction.PARTICIPANTSProperty

addPARTICIPANTS

public void addPARTICIPANTS(physicalEntityParticipant PARTICIPANTS)
                     throws com.ibm.adtech.jastor.JastorException
Description copied from interface: conversion
Adds a value for the 'PARTICIPANTS' property

Specified by:
addPARTICIPANTS in interface conversion
Specified by:
addPARTICIPANTS in interface interaction
Specified by:
addPARTICIPANTS in interface physicalInteraction
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
interaction.PARTICIPANTSProperty

addPARTICIPANTS_asphysicalEntityParticipant

public physicalEntityParticipant addPARTICIPANTS_asphysicalEntityParticipant()
                                                                      throws com.ibm.adtech.jastor.JastorException
Description copied from interface: conversion
Adds an anonymous value for the 'PARTICIPANTS' property

Specified by:
addPARTICIPANTS_asphysicalEntityParticipant in interface conversion
Specified by:
addPARTICIPANTS_asphysicalEntityParticipant in interface interaction
Specified by:
addPARTICIPANTS_asphysicalEntityParticipant in interface physicalInteraction
Returns:
The anoymous physicalEntityParticipant created
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
interaction.PARTICIPANTSProperty

addPARTICIPANTS_asphysicalEntityParticipant

public physicalEntityParticipant addPARTICIPANTS_asphysicalEntityParticipant(com.hp.hpl.jena.rdf.model.Resource resource)
                                                                      throws com.ibm.adtech.jastor.JastorException
Description copied from interface: conversion
Adds a value for the 'PARTICIPANTS' property. This method is equivalent constructing a new instance of physicalEntityParticipant with the factory and calling addPARTICIPANTS(fr.curie.BiNoM.pathways.biopax.physicalEntityParticipant PARTICIPANTS) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#physicalEntityParticipant. That is, this method should not be used as a shortcut for creating new objects in the model.

Specified by:
addPARTICIPANTS_asphysicalEntityParticipant in interface conversion
Specified by:
addPARTICIPANTS_asphysicalEntityParticipant in interface interaction
Specified by:
addPARTICIPANTS_asphysicalEntityParticipant in interface physicalInteraction
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
interaction.PARTICIPANTSProperty

removePARTICIPANTS

public void removePARTICIPANTS(physicalEntityParticipant PARTICIPANTS)
                        throws com.ibm.adtech.jastor.JastorException
Description copied from interface: conversion
Removes a value for the 'PARTICIPANTS' property. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removePARTICIPANTS in interface conversion
Specified by:
removePARTICIPANTS in interface interaction
Specified by:
removePARTICIPANTS in interface physicalInteraction
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
interaction.PARTICIPANTSProperty

getPARTICIPANTS_asentity

public java.util.Iterator getPARTICIPANTS_asentity()
                                            throws com.ibm.adtech.jastor.JastorException
Description copied from interface: interaction
Get an Iterator the 'PARTICIPANTS' property values. This Iteartor may be used to remove all such values.

Specified by:
getPARTICIPANTS_asentity in interface interaction
Returns:
Iterator of entity
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
interaction.PARTICIPANTSProperty

addPARTICIPANTS

public void addPARTICIPANTS(entity PARTICIPANTS)
                     throws com.ibm.adtech.jastor.JastorException
Description copied from interface: interaction
Adds a value for the 'PARTICIPANTS' property

Specified by:
addPARTICIPANTS in interface interaction
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
interaction.PARTICIPANTSProperty

addPARTICIPANTS_asentity

public entity addPARTICIPANTS_asentity()
                                throws com.ibm.adtech.jastor.JastorException
Description copied from interface: interaction
Adds an anonymous value for the 'PARTICIPANTS' property

Specified by:
addPARTICIPANTS_asentity in interface interaction
Returns:
The anoymous entity created
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
interaction.PARTICIPANTSProperty

addPARTICIPANTS_asentity

public entity addPARTICIPANTS_asentity(com.hp.hpl.jena.rdf.model.Resource resource)
                                throws com.ibm.adtech.jastor.JastorException
Description copied from interface: interaction
Adds a value for the 'PARTICIPANTS' property. This method is equivalent constructing a new instance of entity with the factory and calling addPARTICIPANTS(fr.curie.BiNoM.pathways.biopax.entity PARTICIPANTS) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#entity. That is, this method should not be used as a shortcut for creating new objects in the model.

Specified by:
addPARTICIPANTS_asentity in interface interaction
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
interaction.PARTICIPANTSProperty

removePARTICIPANTS

public void removePARTICIPANTS(entity PARTICIPANTS)
                        throws com.ibm.adtech.jastor.JastorException
Description copied from interface: interaction
Removes a value for the 'PARTICIPANTS' property. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removePARTICIPANTS in interface interaction
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
interaction.PARTICIPANTSProperty

getEVIDENCE

public java.util.Iterator getEVIDENCE()
                               throws com.ibm.adtech.jastor.JastorException
Description copied from interface: interaction
Get an Iterator the 'EVIDENCE' property values. This Iteartor may be used to remove all such values.

Specified by:
getEVIDENCE in interface interaction
Returns:
Iterator of evidence
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
interaction.EVIDENCEProperty

addEVIDENCE

public void addEVIDENCE(evidence EVIDENCE)
                 throws com.ibm.adtech.jastor.JastorException
Description copied from interface: interaction
Adds a value for the 'EVIDENCE' property

Specified by:
addEVIDENCE in interface interaction
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
interaction.EVIDENCEProperty

addEVIDENCE

public evidence addEVIDENCE()
                     throws com.ibm.adtech.jastor.JastorException
Description copied from interface: interaction
Adds an anonymous value for the 'EVIDENCE' property

Specified by:
addEVIDENCE in interface interaction
Returns:
The anoymous evidence created
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
interaction.EVIDENCEProperty

addEVIDENCE

public evidence addEVIDENCE(com.hp.hpl.jena.rdf.model.Resource resource)
                     throws com.ibm.adtech.jastor.JastorException
Description copied from interface: interaction
Adds a value for the 'EVIDENCE' property. This method is equivalent constructing a new instance of evidence with the factory and calling addEVIDENCE(fr.curie.BiNoM.pathways.biopax.evidence EVIDENCE) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#evidence. That is, this method should not be used as a shortcut for creating new objects in the model.

Specified by:
addEVIDENCE in interface interaction
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
interaction.EVIDENCEProperty

removeEVIDENCE

public void removeEVIDENCE(evidence EVIDENCE)
                    throws com.ibm.adtech.jastor.JastorException
Description copied from interface: interaction
Removes a value for the 'EVIDENCE' property. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeEVIDENCE in interface interaction
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
interaction.EVIDENCEProperty

getINTERACTION_DASH_TYPE

public java.util.Iterator getINTERACTION_DASH_TYPE()
                                            throws com.ibm.adtech.jastor.JastorException
Description copied from interface: physicalInteraction
Get an Iterator the 'INTERACTION_DASH_TYPE' property values. This Iteartor may be used to remove all such values.

Specified by:
getINTERACTION_DASH_TYPE in interface physicalInteraction
Returns:
Iterator of openControlledVocabulary
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
physicalInteraction.INTERACTION_DASH_TYPEProperty

addINTERACTION_DASH_TYPE

public void addINTERACTION_DASH_TYPE(openControlledVocabulary INTERACTION_DASH_TYPE)
                              throws com.ibm.adtech.jastor.JastorException
Description copied from interface: physicalInteraction
Adds a value for the 'INTERACTION_DASH_TYPE' property

Specified by:
addINTERACTION_DASH_TYPE in interface physicalInteraction
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
physicalInteraction.INTERACTION_DASH_TYPEProperty

addINTERACTION_DASH_TYPE

public openControlledVocabulary addINTERACTION_DASH_TYPE()
                                                  throws com.ibm.adtech.jastor.JastorException
Description copied from interface: physicalInteraction
Adds an anonymous value for the 'INTERACTION_DASH_TYPE' property

Specified by:
addINTERACTION_DASH_TYPE in interface physicalInteraction
Returns:
The anoymous openControlledVocabulary created
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
physicalInteraction.INTERACTION_DASH_TYPEProperty

addINTERACTION_DASH_TYPE

public openControlledVocabulary addINTERACTION_DASH_TYPE(com.hp.hpl.jena.rdf.model.Resource resource)
                                                  throws com.ibm.adtech.jastor.JastorException
Description copied from interface: physicalInteraction
Adds a value for the 'INTERACTION_DASH_TYPE' property. This method is equivalent constructing a new instance of openControlledVocabulary with the factory and calling addINTERACTION_DASH_TYPE(fr.curie.BiNoM.pathways.biopax.openControlledVocabulary INTERACTION_DASH_TYPE) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#openControlledVocabulary. That is, this method should not be used as a shortcut for creating new objects in the model.

Specified by:
addINTERACTION_DASH_TYPE in interface physicalInteraction
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
physicalInteraction.INTERACTION_DASH_TYPEProperty

removeINTERACTION_DASH_TYPE

public void removeINTERACTION_DASH_TYPE(openControlledVocabulary INTERACTION_DASH_TYPE)
                                 throws com.ibm.adtech.jastor.JastorException
Description copied from interface: physicalInteraction
Removes a value for the 'INTERACTION_DASH_TYPE' property. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeINTERACTION_DASH_TYPE in interface physicalInteraction
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
physicalInteraction.INTERACTION_DASH_TYPEProperty

getLEFT

public java.util.Iterator getLEFT()
                           throws com.ibm.adtech.jastor.JastorException
Description copied from interface: conversion
Get an Iterator the 'LEFT' property values. This Iteartor may be used to remove all such values.

Specified by:
getLEFT in interface conversion
Returns:
Iterator of physicalEntityParticipant
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
conversion.LEFTProperty

addLEFT

public void addLEFT(physicalEntityParticipant LEFT)
             throws com.ibm.adtech.jastor.JastorException
Description copied from interface: conversion
Adds a value for the 'LEFT' property

Specified by:
addLEFT in interface conversion
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
conversion.LEFTProperty

addLEFT

public physicalEntityParticipant addLEFT()
                                  throws com.ibm.adtech.jastor.JastorException
Description copied from interface: conversion
Adds an anonymous value for the 'LEFT' property

Specified by:
addLEFT in interface conversion
Returns:
The anoymous physicalEntityParticipant created
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
conversion.LEFTProperty

addLEFT

public physicalEntityParticipant addLEFT(com.hp.hpl.jena.rdf.model.Resource resource)
                                  throws com.ibm.adtech.jastor.JastorException
Description copied from interface: conversion
Adds a value for the 'LEFT' property. This method is equivalent constructing a new instance of physicalEntityParticipant with the factory and calling addLEFT(fr.curie.BiNoM.pathways.biopax.physicalEntityParticipant LEFT) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#physicalEntityParticipant. That is, this method should not be used as a shortcut for creating new objects in the model.

Specified by:
addLEFT in interface conversion
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
conversion.LEFTProperty

removeLEFT

public void removeLEFT(physicalEntityParticipant LEFT)
                throws com.ibm.adtech.jastor.JastorException
Description copied from interface: conversion
Removes a value for the 'LEFT' property. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeLEFT in interface conversion
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
conversion.LEFTProperty

getSPONTANEOUS

public java.lang.String getSPONTANEOUS()
                                throws com.ibm.adtech.jastor.JastorException
Description copied from interface: conversion
Gets the 'SPONTANEOUS' property value

Specified by:
getSPONTANEOUS in interface conversion
Returns:
String
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
conversion.SPONTANEOUSProperty

setSPONTANEOUS

public void setSPONTANEOUS(java.lang.String SPONTANEOUS)
                    throws com.ibm.adtech.jastor.JastorException
Description copied from interface: conversion
Sets the 'SPONTANEOUS' property value

Specified by:
setSPONTANEOUS in interface conversion
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
conversion.SPONTANEOUSProperty

getRIGHT

public java.util.Iterator getRIGHT()
                            throws com.ibm.adtech.jastor.JastorException
Description copied from interface: conversion
Get an Iterator the 'RIGHT' property values. This Iteartor may be used to remove all such values.

Specified by:
getRIGHT in interface conversion
Returns:
Iterator of physicalEntityParticipant
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
conversion.RIGHTProperty

addRIGHT

public void addRIGHT(physicalEntityParticipant RIGHT)
              throws com.ibm.adtech.jastor.JastorException
Description copied from interface: conversion
Adds a value for the 'RIGHT' property

Specified by:
addRIGHT in interface conversion
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
conversion.RIGHTProperty

addRIGHT

public physicalEntityParticipant addRIGHT()
                                   throws com.ibm.adtech.jastor.JastorException
Description copied from interface: conversion
Adds an anonymous value for the 'RIGHT' property

Specified by:
addRIGHT in interface conversion
Returns:
The anoymous physicalEntityParticipant created
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
conversion.RIGHTProperty

addRIGHT

public physicalEntityParticipant addRIGHT(com.hp.hpl.jena.rdf.model.Resource resource)
                                   throws com.ibm.adtech.jastor.JastorException
Description copied from interface: conversion
Adds a value for the 'RIGHT' property. This method is equivalent constructing a new instance of physicalEntityParticipant with the factory and calling addRIGHT(fr.curie.BiNoM.pathways.biopax.physicalEntityParticipant RIGHT) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#physicalEntityParticipant. That is, this method should not be used as a shortcut for creating new objects in the model.

Specified by:
addRIGHT in interface conversion
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
conversion.RIGHTProperty

removeRIGHT

public void removeRIGHT(physicalEntityParticipant RIGHT)
                 throws com.ibm.adtech.jastor.JastorException
Description copied from interface: conversion
Removes a value for the 'RIGHT' property. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeRIGHT in interface conversion
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
conversion.RIGHTProperty

getDELTA_DASH_H

public java.util.Iterator getDELTA_DASH_H()
                                   throws com.ibm.adtech.jastor.JastorException
Description copied from interface: biochemicalReaction
Iterates through the 'DELTA_DASH_H' property values. This Iteartor may be used to remove all such values.

Specified by:
getDELTA_DASH_H in interface biochemicalReaction
Returns:
Iterator of Double
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
biochemicalReaction.DELTA_DASH_HProperty

addDELTA_DASH_H

public void addDELTA_DASH_H(java.lang.Double DELTA_DASH_H)
                     throws com.ibm.adtech.jastor.JastorException
Description copied from interface: biochemicalReaction
Add a 'DELTA_DASH_H' property value

Specified by:
addDELTA_DASH_H in interface biochemicalReaction
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
biochemicalReaction.DELTA_DASH_HProperty

removeDELTA_DASH_H

public void removeDELTA_DASH_H(java.lang.Double DELTA_DASH_H)
                        throws com.ibm.adtech.jastor.JastorException
Description copied from interface: biochemicalReaction
Remove a 'DELTA_DASH_H' property value. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeDELTA_DASH_H in interface biochemicalReaction
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
biochemicalReaction.DELTA_DASH_HProperty

getEC_DASH_NUMBER

public java.util.Iterator getEC_DASH_NUMBER()
                                     throws com.ibm.adtech.jastor.JastorException
Description copied from interface: biochemicalReaction
Iterates through the 'EC_DASH_NUMBER' property values. This Iteartor may be used to remove all such values.

Specified by:
getEC_DASH_NUMBER in interface biochemicalReaction
Returns:
Iterator of String
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
biochemicalReaction.EC_DASH_NUMBERProperty

addEC_DASH_NUMBER

public void addEC_DASH_NUMBER(java.lang.String EC_DASH_NUMBER)
                       throws com.ibm.adtech.jastor.JastorException
Description copied from interface: biochemicalReaction
Add a 'EC_DASH_NUMBER' property value

Specified by:
addEC_DASH_NUMBER in interface biochemicalReaction
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
biochemicalReaction.EC_DASH_NUMBERProperty

removeEC_DASH_NUMBER

public void removeEC_DASH_NUMBER(java.lang.String EC_DASH_NUMBER)
                          throws com.ibm.adtech.jastor.JastorException
Description copied from interface: biochemicalReaction
Remove a 'EC_DASH_NUMBER' property value. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeEC_DASH_NUMBER in interface biochemicalReaction
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
biochemicalReaction.EC_DASH_NUMBERProperty

getDELTA_DASH_S

public java.util.Iterator getDELTA_DASH_S()
                                   throws com.ibm.adtech.jastor.JastorException
Description copied from interface: biochemicalReaction
Iterates through the 'DELTA_DASH_S' property values. This Iteartor may be used to remove all such values.

Specified by:
getDELTA_DASH_S in interface biochemicalReaction
Returns:
Iterator of Double
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
biochemicalReaction.DELTA_DASH_SProperty

addDELTA_DASH_S

public void addDELTA_DASH_S(java.lang.Double DELTA_DASH_S)
                     throws com.ibm.adtech.jastor.JastorException
Description copied from interface: biochemicalReaction
Add a 'DELTA_DASH_S' property value

Specified by:
addDELTA_DASH_S in interface biochemicalReaction
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
biochemicalReaction.DELTA_DASH_SProperty

removeDELTA_DASH_S

public void removeDELTA_DASH_S(java.lang.Double DELTA_DASH_S)
                        throws com.ibm.adtech.jastor.JastorException
Description copied from interface: biochemicalReaction
Remove a 'DELTA_DASH_S' property value. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeDELTA_DASH_S in interface biochemicalReaction
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
biochemicalReaction.DELTA_DASH_SProperty

getDELTA_DASH_G

public java.util.Iterator getDELTA_DASH_G()
                                   throws com.ibm.adtech.jastor.JastorException
Description copied from interface: biochemicalReaction
Get an Iterator the 'DELTA_DASH_G' property values. This Iteartor may be used to remove all such values.

Specified by:
getDELTA_DASH_G in interface biochemicalReaction
Returns:
Iterator of deltaGprimeO
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
biochemicalReaction.DELTA_DASH_GProperty

addDELTA_DASH_G

public void addDELTA_DASH_G(deltaGprimeO DELTA_DASH_G)
                     throws com.ibm.adtech.jastor.JastorException
Description copied from interface: biochemicalReaction
Adds a value for the 'DELTA_DASH_G' property

Specified by:
addDELTA_DASH_G in interface biochemicalReaction
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
biochemicalReaction.DELTA_DASH_GProperty

addDELTA_DASH_G

public deltaGprimeO addDELTA_DASH_G()
                             throws com.ibm.adtech.jastor.JastorException
Description copied from interface: biochemicalReaction
Adds an anonymous value for the 'DELTA_DASH_G' property

Specified by:
addDELTA_DASH_G in interface biochemicalReaction
Returns:
The anoymous deltaGprimeO created
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
biochemicalReaction.DELTA_DASH_GProperty

addDELTA_DASH_G

public deltaGprimeO addDELTA_DASH_G(com.hp.hpl.jena.rdf.model.Resource resource)
                             throws com.ibm.adtech.jastor.JastorException
Description copied from interface: biochemicalReaction
Adds a value for the 'DELTA_DASH_G' property. This method is equivalent constructing a new instance of deltaGprimeO with the factory and calling addDELTA_DASH_G(fr.curie.BiNoM.pathways.biopax.deltaGprimeO DELTA_DASH_G) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#deltaGprimeO. That is, this method should not be used as a shortcut for creating new objects in the model.

Specified by:
addDELTA_DASH_G in interface biochemicalReaction
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
biochemicalReaction.DELTA_DASH_GProperty

removeDELTA_DASH_G

public void removeDELTA_DASH_G(deltaGprimeO DELTA_DASH_G)
                        throws com.ibm.adtech.jastor.JastorException
Description copied from interface: biochemicalReaction
Removes a value for the 'DELTA_DASH_G' property. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeDELTA_DASH_G in interface biochemicalReaction
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
biochemicalReaction.DELTA_DASH_GProperty

getKEQ

public java.util.Iterator getKEQ()
                          throws com.ibm.adtech.jastor.JastorException
Description copied from interface: biochemicalReaction
Get an Iterator the 'KEQ' property values. This Iteartor may be used to remove all such values.

Specified by:
getKEQ in interface biochemicalReaction
Returns:
Iterator of kPrime
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
biochemicalReaction.KEQProperty

addKEQ

public void addKEQ(kPrime KEQ)
            throws com.ibm.adtech.jastor.JastorException
Description copied from interface: biochemicalReaction
Adds a value for the 'KEQ' property

Specified by:
addKEQ in interface biochemicalReaction
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
biochemicalReaction.KEQProperty

addKEQ

public kPrime addKEQ()
              throws com.ibm.adtech.jastor.JastorException
Description copied from interface: biochemicalReaction
Adds an anonymous value for the 'KEQ' property

Specified by:
addKEQ in interface biochemicalReaction
Returns:
The anoymous kPrime created
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
biochemicalReaction.KEQProperty

addKEQ

public kPrime addKEQ(com.hp.hpl.jena.rdf.model.Resource resource)
              throws com.ibm.adtech.jastor.JastorException
Description copied from interface: biochemicalReaction
Adds a value for the 'KEQ' property. This method is equivalent constructing a new instance of kPrime with the factory and calling addKEQ(fr.curie.BiNoM.pathways.biopax.kPrime KEQ) The resource argument have rdf:type http://www.biopax.org/release/biopax-level2.owl#kPrime. That is, this method should not be used as a shortcut for creating new objects in the model.

Specified by:
addKEQ in interface biochemicalReaction
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
biochemicalReaction.KEQProperty

removeKEQ

public void removeKEQ(kPrime KEQ)
               throws com.ibm.adtech.jastor.JastorException
Description copied from interface: biochemicalReaction
Removes a value for the 'KEQ' property. This method should not be invoked while iterator through values. In that case, the remove() method of the Iterator itself should be used.

Specified by:
removeKEQ in interface biochemicalReaction
Throws:
com.ibm.adtech.jastor.JastorException
See Also:
biochemicalReaction.KEQProperty

registerListener

public void registerListener(com.ibm.adtech.jastor.ThingListener listener)
Specified by:
registerListener in interface com.ibm.adtech.jastor.Thing
Overrides:
registerListener in class com.ibm.adtech.jastor.ThingImpl

unregisterListener

public void unregisterListener(com.ibm.adtech.jastor.ThingListener listener)
Specified by:
unregisterListener in interface com.ibm.adtech.jastor.Thing
Overrides:
unregisterListener in class com.ibm.adtech.jastor.ThingImpl

addedStatement

public void addedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)
Specified by:
addedStatement in interface com.hp.hpl.jena.rdf.model.ModelChangedListener
Overrides:
addedStatement in class com.hp.hpl.jena.rdf.listeners.StatementListener

removedStatement

public void removedStatement(com.hp.hpl.jena.rdf.model.Statement stmt)
Specified by:
removedStatement in interface com.hp.hpl.jena.rdf.model.ModelChangedListener
Overrides:
removedStatement in class com.hp.hpl.jena.rdf.listeners.StatementListener