Uses of Package
fr.curie.BiNoM.pathways

Packages that use fr.curie.BiNoM.pathways

fr.curie.BiNoM.cytoscape.biopax	Cytoscape interface for working with BioPAX files
fr.curie.BiNoM.pathways	Set of converters for conversion of one systems biology format into an other.
fr.curie.BiNoM.pathways.utils	Utility classes

Classes in fr.curie.BiNoM.pathways used by fr.curie.BiNoM.cytoscape.biopax

BioPAXToCytoscapeConverter.Option
Set of conversion options

Classes in fr.curie.BiNoM.pathways used by fr.curie.BiNoM.pathways

BioPAXToCytoscapeConverter
Converts BioPAX (represented by BioPAX object) to XGMML (represented by GraphDocument object)

BioPAXToCytoscapeConverter.Graph
Little auxillary container for BioPAX and GraphDocument object

BioPAXToCytoscapeConverter.Option
Set of conversion options

BioPAXToSBMLConverter
Converts BioPAX (represented by BioPAX object) to SBML (represented by org.sbml.x2001.ns.celldesigner.SbmlDocument object)

CellDesignerToCytoscapeConverter.Graph
Simple container for GraphDocument and SbmlDocument objects

Classes in fr.curie.BiNoM.pathways used by fr.curie.BiNoM.pathways.utils

BioPAXToSBMLConverter
Converts BioPAX (represented by BioPAX object) to SBML (represented by org.sbml.x2001.ns.celldesigner.SbmlDocument object)