Uses of Interface
fr.curie.BiNoM.pathways.biopax.physicalInteraction

Packages that use physicalInteraction

fr.curie.BiNoM.pathways.biopax

Java mapping of BioPAX version 2 (generated by Jastor)

Uses of physicalInteraction in fr.curie.BiNoM.pathways.biopax

Subinterfaces of physicalInteraction in fr.curie.BiNoM.pathways.biopax

interface	biochemicalReaction Interface for biochemicalReaction ontology class Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
interface	catalysis Interface for catalysis ontology class Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
interface	complexAssembly Interface for complexAssembly ontology class Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
interface	control Interface for control ontology class Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
interface	conversion Interface for conversion ontology class Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
interface	modulation Interface for modulation ontology class Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
interface	transport Interface for transport ontology class Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
interface	transportWithBiochemicalReaction Interface for transportWithBiochemicalReaction ontology class Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.

Classes in fr.curie.BiNoM.pathways.biopax that implement physicalInteraction

class	biochemicalReactionImpl Implementation of biochemicalReaction Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
class	catalysisImpl Implementation of catalysis Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
class	complexAssemblyImpl Implementation of complexAssembly Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
class	controlImpl Implementation of control Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
class	conversionImpl Implementation of conversion Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
class	modulationImpl Implementation of modulation Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
class	physicalInteractionImpl Implementation of physicalInteraction Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
class	transportImpl Implementation of transport Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
class	transportWithBiochemicalReactionImpl Implementation of transportWithBiochemicalReaction Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.

Methods in fr.curie.BiNoM.pathways.biopax that return physicalInteraction

static physicalInteraction	biopax_DASH_level2_DOT_owlFactory.createphysicalInteraction(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of physicalInteraction.
static physicalInteraction	biopax_DASH_level2_DOT_owlFactory.createphysicalInteraction(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of physicalInteraction.
static physicalInteraction	biopax_DASH_level2_DOT_owlFactory.getphysicalInteraction(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of physicalInteraction.
static physicalInteraction	biopax_DASH_level2_DOT_owlFactory.getphysicalInteraction(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of physicalInteraction.

Methods in fr.curie.BiNoM.pathways.biopax with parameters of type physicalInteraction

void	physicalInteractionListener.AVAILABILITYAdded(physicalInteraction source, java.lang.String newValue) Called when a value of AVAILABILITY has been added
void	physicalInteractionListener.AVAILABILITYRemoved(physicalInteraction source, java.lang.String oldValue) Called when a value of AVAILABILITY has been removed
void	physicalInteractionListener.COMMENTAdded(physicalInteraction source, java.lang.String newValue) Called when a value of COMMENT has been added
void	physicalInteractionListener.COMMENTRemoved(physicalInteraction source, java.lang.String oldValue) Called when a value of COMMENT has been removed
void	physicalInteractionListener.DATA_DASH_SOURCEAdded(physicalInteraction source, dataSource newValue) Called when a value of DATA_DASH_SOURCE has been added
void	physicalInteractionListener.DATA_DASH_SOURCERemoved(physicalInteraction source, dataSource oldValue) Called when a value of DATA_DASH_SOURCE has been removed
void	physicalInteractionListener.EVIDENCEAdded(physicalInteraction source, evidence newValue) Called when a value of EVIDENCE has been added
void	physicalInteractionListener.EVIDENCERemoved(physicalInteraction source, evidence oldValue) Called when a value of EVIDENCE has been removed
void	physicalInteractionListener.INTERACTION_DASH_TYPEAdded(physicalInteraction source, openControlledVocabulary newValue) Called when a value of INTERACTION_DASH_TYPE has been added
void	physicalInteractionListener.INTERACTION_DASH_TYPERemoved(physicalInteraction source, openControlledVocabulary oldValue) Called when a value of INTERACTION_DASH_TYPE has been removed
void	physicalInteractionListener.NAMEChanged(physicalInteraction source) Called when NAME has changed
void	physicalInteractionListener.PARTICIPANTSAdded(physicalInteraction source, entity newValue) Called when a value of PARTICIPANTS has been added
void	physicalInteractionListener.PARTICIPANTSAdded(physicalInteraction source, physicalEntityParticipant newValue) Called when a value of PARTICIPANTS has been added
void	physicalInteractionListener.PARTICIPANTSRemoved(physicalInteraction source, entity oldValue) Called when a value of PARTICIPANTS has been removed
void	physicalInteractionListener.PARTICIPANTSRemoved(physicalInteraction source, physicalEntityParticipant oldValue) Called when a value of PARTICIPANTS has been removed
void	physicalInteractionListener.SHORT_DASH_NAMEChanged(physicalInteraction source) Called when SHORT_DASH_NAME has changed
void	physicalInteractionListener.SYNONYMSAdded(physicalInteraction source, java.lang.String newValue) Called when a value of SYNONYMS has been added
void	physicalInteractionListener.SYNONYMSRemoved(physicalInteraction source, java.lang.String oldValue) Called when a value of SYNONYMS has been removed
void	physicalInteractionListener.XREFAdded(physicalInteraction source, xref newValue) Called when a value of XREF has been added
void	physicalInteractionListener.XREFRemoved(physicalInteraction source, xref oldValue) Called when a value of XREF has been removed