Uses of Interface
fr.curie.BiNoM.pathways.biopax.biochemicalReaction

Packages that use biochemicalReaction

fr.curie.BiNoM.pathways.biopax	Java mapping of BioPAX version 2 (generated by Jastor)
fr.curie.BiNoM.pathways.test	Diverse scripts (used internally, but you can find some examples of use there)
fr.curie.BiNoM.pathways.wrappers	Auxilary containers representing different systems biology formats

Uses of biochemicalReaction in fr.curie.BiNoM.pathways.biopax

Subinterfaces of biochemicalReaction in fr.curie.BiNoM.pathways.biopax

interface

transportWithBiochemicalReaction Interface for transportWithBiochemicalReaction ontology class Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.

Classes in fr.curie.BiNoM.pathways.biopax that implement biochemicalReaction

class	biochemicalReactionImpl Implementation of biochemicalReaction Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
class	transportWithBiochemicalReactionImpl Implementation of transportWithBiochemicalReaction Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.

Methods in fr.curie.BiNoM.pathways.biopax that return biochemicalReaction

static biochemicalReaction	biopax_DASH_level2_DOT_owlFactory.createbiochemicalReaction(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of biochemicalReaction.
static biochemicalReaction	biopax_DASH_level2_DOT_owlFactory.createbiochemicalReaction(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of biochemicalReaction.
static biochemicalReaction	biopax_DASH_level2_DOT_owlFactory.getbiochemicalReaction(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of biochemicalReaction.
static biochemicalReaction	biopax_DASH_level2_DOT_owlFactory.getbiochemicalReaction(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of biochemicalReaction.

Methods in fr.curie.BiNoM.pathways.biopax with parameters of type biochemicalReaction

void	biochemicalReactionListener.AVAILABILITYAdded(biochemicalReaction source, java.lang.String newValue) Called when a value of AVAILABILITY has been added
void	biochemicalReactionListener.AVAILABILITYRemoved(biochemicalReaction source, java.lang.String oldValue) Called when a value of AVAILABILITY has been removed
void	biochemicalReactionListener.COMMENTAdded(biochemicalReaction source, java.lang.String newValue) Called when a value of COMMENT has been added
void	biochemicalReactionListener.COMMENTRemoved(biochemicalReaction source, java.lang.String oldValue) Called when a value of COMMENT has been removed
void	biochemicalReactionListener.DATA_DASH_SOURCEAdded(biochemicalReaction source, dataSource newValue) Called when a value of DATA_DASH_SOURCE has been added
void	biochemicalReactionListener.DATA_DASH_SOURCERemoved(biochemicalReaction source, dataSource oldValue) Called when a value of DATA_DASH_SOURCE has been removed
void	biochemicalReactionListener.DELTA_DASH_GAdded(biochemicalReaction source, deltaGprimeO newValue) Called when a value of DELTA_DASH_G has been added
void	biochemicalReactionListener.DELTA_DASH_GRemoved(biochemicalReaction source, deltaGprimeO oldValue) Called when a value of DELTA_DASH_G has been removed
void	biochemicalReactionListener.DELTA_DASH_HAdded(biochemicalReaction source, java.lang.Double newValue) Called when a value of DELTA_DASH_H has been added
void	biochemicalReactionListener.DELTA_DASH_HRemoved(biochemicalReaction source, java.lang.Double oldValue) Called when a value of DELTA_DASH_H has been removed
void	biochemicalReactionListener.DELTA_DASH_SAdded(biochemicalReaction source, java.lang.Double newValue) Called when a value of DELTA_DASH_S has been added
void	biochemicalReactionListener.DELTA_DASH_SRemoved(biochemicalReaction source, java.lang.Double oldValue) Called when a value of DELTA_DASH_S has been removed
void	biochemicalReactionListener.EC_DASH_NUMBERAdded(biochemicalReaction source, java.lang.String newValue) Called when a value of EC_DASH_NUMBER has been added
void	biochemicalReactionListener.EC_DASH_NUMBERRemoved(biochemicalReaction source, java.lang.String oldValue) Called when a value of EC_DASH_NUMBER has been removed
void	biochemicalReactionListener.EVIDENCEAdded(biochemicalReaction source, evidence newValue) Called when a value of EVIDENCE has been added
void	biochemicalReactionListener.EVIDENCERemoved(biochemicalReaction source, evidence oldValue) Called when a value of EVIDENCE has been removed
void	biochemicalReactionListener.INTERACTION_DASH_TYPEAdded(biochemicalReaction source, openControlledVocabulary newValue) Called when a value of INTERACTION_DASH_TYPE has been added
void	biochemicalReactionListener.INTERACTION_DASH_TYPERemoved(biochemicalReaction source, openControlledVocabulary oldValue) Called when a value of INTERACTION_DASH_TYPE has been removed
void	biochemicalReactionListener.KEQAdded(biochemicalReaction source, kPrime newValue) Called when a value of KEQ has been added
void	biochemicalReactionListener.KEQRemoved(biochemicalReaction source, kPrime oldValue) Called when a value of KEQ has been removed
void	biochemicalReactionListener.LEFTAdded(biochemicalReaction source, physicalEntityParticipant newValue) Called when a value of LEFT has been added
void	biochemicalReactionListener.LEFTRemoved(biochemicalReaction source, physicalEntityParticipant oldValue) Called when a value of LEFT has been removed
void	biochemicalReactionListener.NAMEChanged(biochemicalReaction source) Called when NAME has changed
void	biochemicalReactionListener.PARTICIPANTSAdded(biochemicalReaction source, entity newValue) Called when a value of PARTICIPANTS has been added
void	biochemicalReactionListener.PARTICIPANTSAdded(biochemicalReaction source, physicalEntityParticipant newValue) Called when a value of PARTICIPANTS has been added
void	biochemicalReactionListener.PARTICIPANTSRemoved(biochemicalReaction source, entity oldValue) Called when a value of PARTICIPANTS has been removed
void	biochemicalReactionListener.PARTICIPANTSRemoved(biochemicalReaction source, physicalEntityParticipant oldValue) Called when a value of PARTICIPANTS has been removed
void	biochemicalReactionListener.RIGHTAdded(biochemicalReaction source, physicalEntityParticipant newValue) Called when a value of RIGHT has been added
void	biochemicalReactionListener.RIGHTRemoved(biochemicalReaction source, physicalEntityParticipant oldValue) Called when a value of RIGHT has been removed
void	biochemicalReactionListener.SHORT_DASH_NAMEChanged(biochemicalReaction source) Called when SHORT_DASH_NAME has changed
void	biochemicalReactionListener.SPONTANEOUSChanged(biochemicalReaction source) Called when SPONTANEOUS has changed
void	biochemicalReactionListener.SYNONYMSAdded(biochemicalReaction source, java.lang.String newValue) Called when a value of SYNONYMS has been added
void	biochemicalReactionListener.SYNONYMSRemoved(biochemicalReaction source, java.lang.String oldValue) Called when a value of SYNONYMS has been removed
void	biochemicalReactionListener.XREFAdded(biochemicalReaction source, xref newValue) Called when a value of XREF has been added
void	biochemicalReactionListener.XREFRemoved(biochemicalReaction source, xref oldValue) Called when a value of XREF has been removed

Uses of biochemicalReaction in fr.curie.BiNoM.pathways.test

Methods in fr.curie.BiNoM.pathways.test with parameters of type biochemicalReaction

static void

testEwingNetwork.addPublication(biochemicalReaction r, java.lang.String pub)

Uses of biochemicalReaction in fr.curie.BiNoM.pathways.wrappers

Methods in fr.curie.BiNoM.pathways.wrappers with parameters of type biochemicalReaction

void	Transpath.addReferencesToReaction(com.biobaseInternational.ReactionDocument.Reaction r, biochemicalReaction br)