A B C D E F G H I K L M N O P Q R S T U V W X Y

O

OCTAGON - Static variable in class fr.curie.BiNoM.pathways.analysis.structure.Node

ontology - Variable in class fr.curie.BiNoM.pathways.wrappers.BioPAX

com.hp.hpl.jena.ontology.Ontology object

openControlledVocabulary - Interface in fr.curie.BiNoM.pathways.biopax

Interface for openControlledVocabulary ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.

openControlledVocabularyImpl - Class in fr.curie.BiNoM.pathways.biopax

Implementation of openControlledVocabulary Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.

openControlledVocabularyListener - Interface in fr.curie.BiNoM.pathways.biopax

Implementations of this listener may be registered with instances of fr.curie.BiNoM.pathways.biopax.openControlledVocabulary to receive notification when properties changed, added or removed.

ORGANISMAdded(complex, bioSource) - Method in interface fr.curie.BiNoM.pathways.biopax.complexListener

Called when a value of ORGANISM has been added

ORGANISMAdded(dna, bioSource) - Method in interface fr.curie.BiNoM.pathways.biopax.dnaListener

Called when a value of ORGANISM has been added

ORGANISMChanged(pathway) - Method in interface fr.curie.BiNoM.pathways.biopax.pathwayListener

Called when ORGANISM has changed

ORGANISMChanged(protein) - Method in interface fr.curie.BiNoM.pathways.biopax.proteinListener

Called when ORGANISM has changed

ORGANISMChanged(rna) - Method in interface fr.curie.BiNoM.pathways.biopax.rnaListener

Called when ORGANISM has changed

ORGANISMProperty - Static variable in interface fr.curie.BiNoM.pathways.biopax.complex

The Jena Property for ORGANISM

ORGANISMProperty - Static variable in interface fr.curie.BiNoM.pathways.biopax.dna

The Jena Property for ORGANISM

ORGANISMProperty - Static variable in interface fr.curie.BiNoM.pathways.biopax.pathway

The Jena Property for ORGANISM

ORGANISMProperty - Static variable in interface fr.curie.BiNoM.pathways.biopax.protein

The Jena Property for ORGANISM

ORGANISMProperty - Static variable in interface fr.curie.BiNoM.pathways.biopax.rna

The Jena Property for ORGANISM

ORGANISMRemoved(complex, bioSource) - Method in interface fr.curie.BiNoM.pathways.biopax.complexListener

Called when a value of ORGANISM has been removed

ORGANISMRemoved(dna, bioSource) - Method in interface fr.curie.BiNoM.pathways.biopax.dnaListener

Called when a value of ORGANISM has been removed

outcomingEdges - Variable in class fr.curie.BiNoM.pathways.analysis.structure.Node

List of all out-going edges.

OUTPUT_CURRENT_NETWORK - Static variable in class fr.curie.BiNoM.cytoscape.biopax.query.BioPAXSelectEntitiesTask

OUTPUT_NEW_NETWORK - Static variable in class fr.curie.BiNoM.cytoscape.biopax.query.BioPAXSelectEntitiesTask

OWLExtensionFilter - Class in fr.curie.BiNoM.cytoscape.biopax.query

OWLExtensionFilter() - Constructor for class fr.curie.BiNoM.cytoscape.biopax.query.OWLExtensionFilter