A B C D E F G H I K L M N O P Q R S T U V W X Y

U

unificationXref - Interface in fr.curie.BiNoM.pathways.biopax

Interface for unificationXref ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.

unificationXrefImpl - Class in fr.curie.BiNoM.pathways.biopax

Implementation of unificationXref Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.

unificationXrefListener - Interface in fr.curie.BiNoM.pathways.biopax

Implementations of this listener may be registered with instances of fr.curie.BiNoM.pathways.biopax.unificationXref to receive notification when properties changed, added or removed.

UnionOfSets(Set, Set) - Static method in class fr.curie.BiNoM.pathways.utils.Utils

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.biochemicalReactionImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.bioSourceImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.catalysisImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.chemicalStructureImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.complexAssemblyImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.complexImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.confidenceImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.controlImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.conversionImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.dataSourceImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.deltaGprimeOImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.dnaImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.entityImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.evidenceImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.experimentalFormImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.externalReferenceUtilityClassImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.interactionImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.kPrimeImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.modulationImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.openControlledVocabularyImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.pathwayImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.pathwayStepImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.physicalEntityImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.physicalEntityParticipantImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.physicalInteractionImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.proteinImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.publicationXrefImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.relationshipXrefImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.rnaImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.sequenceFeatureImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.sequenceIntervalImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.sequenceLocationImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.sequenceParticipantImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.sequenceSiteImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.smallMoleculeImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.transportImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.transportWithBiochemicalReactionImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.unificationXrefImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.utilityClassImpl

unregisterListener(ThingListener) - Method in class fr.curie.BiNoM.pathways.biopax.xrefImpl

updateMainfileWithReferences() - Method in class fr.curie.BiNoM.pathways.utils.BioPAXMerge

Updating base file with references.

URLAdded(publicationXref, String) - Method in interface fr.curie.BiNoM.pathways.biopax.publicationXrefListener

Called when a value of URL has been added

URLProperty - Static variable in interface fr.curie.BiNoM.pathways.biopax.publicationXref

The Jena Property for URL

URLRemoved(publicationXref, String) - Method in interface fr.curie.BiNoM.pathways.biopax.publicationXrefListener

Called when a value of URL has been removed

useBiopaxModelOntology - Static variable in class fr.curie.BiNoM.pathways.BioPAXToSBMLConverter

not used

useBiopaxModelOntology - Static variable in class fr.curie.BiNoM.pathways.CellDesignerToBioPAXConverter

not used

useIDsForOutput - Variable in class fr.curie.BiNoM.pathways.analysis.structure.Graph

utilityClass - Interface in fr.curie.BiNoM.pathways.biopax

Interface for utilityClass ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.

utilityClassImpl - Class in fr.curie.BiNoM.pathways.biopax

Implementation of utilityClass Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.

utilityClassListener - Interface in fr.curie.BiNoM.pathways.biopax

Implementations of this listener may be registered with instances of fr.curie.BiNoM.pathways.biopax.utilityClass to receive notification when properties changed, added or removed.

Utils - Class in fr.curie.BiNoM.cytoscape.lib

Utils() - Constructor for class fr.curie.BiNoM.cytoscape.lib.Utils

Utils - Class in fr.curie.BiNoM.pathways.utils

Set of simple functions

Utils() - Constructor for class fr.curie.BiNoM.pathways.utils.Utils