Uses of Interface
fr.curie.BiNoM.pathways.biopax.evidence

Packages that use evidence

fr.curie.BiNoM.pathways.biopax

Java mapping of BioPAX version 2 (generated by Jastor)

Uses of evidence in fr.curie.BiNoM.pathways.biopax

Classes in fr.curie.BiNoM.pathways.biopax that implement evidence

class

evidenceImpl Implementation of evidence Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.

Methods in fr.curie.BiNoM.pathways.biopax that return evidence

evidence	transportWithBiochemicalReactionImpl.addEVIDENCE()
evidence	transportImpl.addEVIDENCE()
evidence	physicalInteractionImpl.addEVIDENCE()
evidence	pathwayImpl.addEVIDENCE()
evidence	pathway.addEVIDENCE() Adds an anonymous value for the 'EVIDENCE' property
evidence	modulationImpl.addEVIDENCE()
evidence	interactionImpl.addEVIDENCE()
evidence	interaction.addEVIDENCE() Adds an anonymous value for the 'EVIDENCE' property
evidence	conversionImpl.addEVIDENCE()
evidence	controlImpl.addEVIDENCE()
evidence	complexAssemblyImpl.addEVIDENCE()
evidence	catalysisImpl.addEVIDENCE()
evidence	biochemicalReactionImpl.addEVIDENCE()
evidence	transportWithBiochemicalReactionImpl.addEVIDENCE(com.hp.hpl.jena.rdf.model.Resource resource)
evidence	transportImpl.addEVIDENCE(com.hp.hpl.jena.rdf.model.Resource resource)
evidence	physicalInteractionImpl.addEVIDENCE(com.hp.hpl.jena.rdf.model.Resource resource)
evidence	pathwayImpl.addEVIDENCE(com.hp.hpl.jena.rdf.model.Resource resource)
evidence	pathway.addEVIDENCE(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'EVIDENCE' property.
evidence	modulationImpl.addEVIDENCE(com.hp.hpl.jena.rdf.model.Resource resource)
evidence	interactionImpl.addEVIDENCE(com.hp.hpl.jena.rdf.model.Resource resource)
evidence	interaction.addEVIDENCE(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'EVIDENCE' property.
evidence	conversionImpl.addEVIDENCE(com.hp.hpl.jena.rdf.model.Resource resource)
evidence	controlImpl.addEVIDENCE(com.hp.hpl.jena.rdf.model.Resource resource)
evidence	complexAssemblyImpl.addEVIDENCE(com.hp.hpl.jena.rdf.model.Resource resource)
evidence	catalysisImpl.addEVIDENCE(com.hp.hpl.jena.rdf.model.Resource resource)
evidence	biochemicalReactionImpl.addEVIDENCE(com.hp.hpl.jena.rdf.model.Resource resource)
static evidence	biopax_DASH_level2_DOT_owlFactory.createevidence(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of evidence.
static evidence	biopax_DASH_level2_DOT_owlFactory.createevidence(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of evidence.
static evidence	biopax_DASH_level2_DOT_owlFactory.getevidence(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of evidence.
static evidence	biopax_DASH_level2_DOT_owlFactory.getevidence(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of evidence.

Methods in fr.curie.BiNoM.pathways.biopax with parameters of type evidence

void	transportWithBiochemicalReactionImpl.addEVIDENCE(evidence EVIDENCE)
void	transportImpl.addEVIDENCE(evidence EVIDENCE)
void	physicalInteractionImpl.addEVIDENCE(evidence EVIDENCE)
void	pathwayImpl.addEVIDENCE(evidence EVIDENCE)
void	pathway.addEVIDENCE(evidence EVIDENCE) Adds a value for the 'EVIDENCE' property
void	modulationImpl.addEVIDENCE(evidence EVIDENCE)
void	interactionImpl.addEVIDENCE(evidence EVIDENCE)
void	interaction.addEVIDENCE(evidence EVIDENCE) Adds a value for the 'EVIDENCE' property
void	conversionImpl.addEVIDENCE(evidence EVIDENCE)
void	controlImpl.addEVIDENCE(evidence EVIDENCE)
void	complexAssemblyImpl.addEVIDENCE(evidence EVIDENCE)
void	catalysisImpl.addEVIDENCE(evidence EVIDENCE)
void	biochemicalReactionImpl.addEVIDENCE(evidence EVIDENCE)
void	evidenceListener.COMMENTAdded(evidence source, java.lang.String newValue) Called when a value of COMMENT has been added
void	evidenceListener.COMMENTRemoved(evidence source, java.lang.String oldValue) Called when a value of COMMENT has been removed
void	evidenceListener.CONFIDENCEAdded(evidence source, confidence newValue) Called when a value of CONFIDENCE has been added
void	evidenceListener.CONFIDENCERemoved(evidence source, confidence oldValue) Called when a value of CONFIDENCE has been removed
void	evidenceListener.EVIDENCE_DASH_CODEAdded(evidence source, openControlledVocabulary newValue) Called when a value of EVIDENCE_DASH_CODE has been added
void	evidenceListener.EVIDENCE_DASH_CODERemoved(evidence source, openControlledVocabulary oldValue) Called when a value of EVIDENCE_DASH_CODE has been removed
void	biochemicalReactionListener.EVIDENCEAdded(biochemicalReaction source, evidence newValue) Called when a value of EVIDENCE has been added
void	catalysisListener.EVIDENCEAdded(catalysis source, evidence newValue) Called when a value of EVIDENCE has been added
void	complexAssemblyListener.EVIDENCEAdded(complexAssembly source, evidence newValue) Called when a value of EVIDENCE has been added
void	controlListener.EVIDENCEAdded(control source, evidence newValue) Called when a value of EVIDENCE has been added
void	conversionListener.EVIDENCEAdded(conversion source, evidence newValue) Called when a value of EVIDENCE has been added
void	interactionListener.EVIDENCEAdded(interaction source, evidence newValue) Called when a value of EVIDENCE has been added
void	modulationListener.EVIDENCEAdded(modulation source, evidence newValue) Called when a value of EVIDENCE has been added
void	pathwayListener.EVIDENCEAdded(pathway source, evidence newValue) Called when a value of EVIDENCE has been added
void	physicalInteractionListener.EVIDENCEAdded(physicalInteraction source, evidence newValue) Called when a value of EVIDENCE has been added
void	transportListener.EVIDENCEAdded(transport source, evidence newValue) Called when a value of EVIDENCE has been added
void	transportWithBiochemicalReactionListener.EVIDENCEAdded(transportWithBiochemicalReaction source, evidence newValue) Called when a value of EVIDENCE has been added
void	biochemicalReactionListener.EVIDENCERemoved(biochemicalReaction source, evidence oldValue) Called when a value of EVIDENCE has been removed
void	catalysisListener.EVIDENCERemoved(catalysis source, evidence oldValue) Called when a value of EVIDENCE has been removed
void	complexAssemblyListener.EVIDENCERemoved(complexAssembly source, evidence oldValue) Called when a value of EVIDENCE has been removed
void	controlListener.EVIDENCERemoved(control source, evidence oldValue) Called when a value of EVIDENCE has been removed
void	conversionListener.EVIDENCERemoved(conversion source, evidence oldValue) Called when a value of EVIDENCE has been removed
void	interactionListener.EVIDENCERemoved(interaction source, evidence oldValue) Called when a value of EVIDENCE has been removed
void	modulationListener.EVIDENCERemoved(modulation source, evidence oldValue) Called when a value of EVIDENCE has been removed
void	pathwayListener.EVIDENCERemoved(pathway source, evidence oldValue) Called when a value of EVIDENCE has been removed
void	physicalInteractionListener.EVIDENCERemoved(physicalInteraction source, evidence oldValue) Called when a value of EVIDENCE has been removed
void	transportListener.EVIDENCERemoved(transport source, evidence oldValue) Called when a value of EVIDENCE has been removed
void	transportWithBiochemicalReactionListener.EVIDENCERemoved(transportWithBiochemicalReaction source, evidence oldValue) Called when a value of EVIDENCE has been removed
void	evidenceListener.EXPERIMENTAL_DASH_FORMAdded(evidence source, experimentalForm newValue) Called when a value of EXPERIMENTAL_DASH_FORM has been added
void	evidenceListener.EXPERIMENTAL_DASH_FORMRemoved(evidence source, experimentalForm oldValue) Called when a value of EXPERIMENTAL_DASH_FORM has been removed
void	transportWithBiochemicalReactionImpl.removeEVIDENCE(evidence EVIDENCE)
void	transportImpl.removeEVIDENCE(evidence EVIDENCE)
void	physicalInteractionImpl.removeEVIDENCE(evidence EVIDENCE)
void	pathwayImpl.removeEVIDENCE(evidence EVIDENCE)
void	pathway.removeEVIDENCE(evidence EVIDENCE) Removes a value for the 'EVIDENCE' property.
void	modulationImpl.removeEVIDENCE(evidence EVIDENCE)
void	interactionImpl.removeEVIDENCE(evidence EVIDENCE)
void	interaction.removeEVIDENCE(evidence EVIDENCE) Removes a value for the 'EVIDENCE' property.
void	conversionImpl.removeEVIDENCE(evidence EVIDENCE)
void	controlImpl.removeEVIDENCE(evidence EVIDENCE)
void	complexAssemblyImpl.removeEVIDENCE(evidence EVIDENCE)
void	catalysisImpl.removeEVIDENCE(evidence EVIDENCE)
void	biochemicalReactionImpl.removeEVIDENCE(evidence EVIDENCE)
void	evidenceListener.XREFAdded(evidence source, xref newValue) Called when a value of XREF has been added
void	evidenceListener.XREFRemoved(evidence source, xref oldValue) Called when a value of XREF has been removed