Uses of Interface
fr.curie.BiNoM.pathways.biopax.openControlledVocabulary

Packages that use openControlledVocabulary

fr.curie.BiNoM.pathways.biopax	Java mapping of BioPAX version 2 (generated by Jastor)
fr.curie.BiNoM.pathways.wrappers	Auxilary containers representing different systems biology formats

Uses of openControlledVocabulary in fr.curie.BiNoM.pathways.biopax

Classes in fr.curie.BiNoM.pathways.biopax that implement openControlledVocabulary

class

openControlledVocabularyImpl Implementation of openControlledVocabulary Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.

Methods in fr.curie.BiNoM.pathways.biopax that return openControlledVocabulary

openControlledVocabulary	evidenceImpl.addEVIDENCE_DASH_CODE()
openControlledVocabulary	evidence.addEVIDENCE_DASH_CODE() Adds an anonymous value for the 'EVIDENCE_DASH_CODE' property
openControlledVocabulary	evidenceImpl.addEVIDENCE_DASH_CODE(com.hp.hpl.jena.rdf.model.Resource resource)
openControlledVocabulary	evidence.addEVIDENCE_DASH_CODE(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'EVIDENCE_DASH_CODE' property.
openControlledVocabulary	experimentalFormImpl.addEXPERIMENTAL_DASH_FORM_DASH_TYPE()
openControlledVocabulary	experimentalForm.addEXPERIMENTAL_DASH_FORM_DASH_TYPE() Adds an anonymous value for the 'EXPERIMENTAL_DASH_FORM_DASH_TYPE' property
openControlledVocabulary	experimentalFormImpl.addEXPERIMENTAL_DASH_FORM_DASH_TYPE(com.hp.hpl.jena.rdf.model.Resource resource)
openControlledVocabulary	experimentalForm.addEXPERIMENTAL_DASH_FORM_DASH_TYPE(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'EXPERIMENTAL_DASH_FORM_DASH_TYPE' property.
openControlledVocabulary	transportWithBiochemicalReactionImpl.addINTERACTION_DASH_TYPE()
openControlledVocabulary	transportImpl.addINTERACTION_DASH_TYPE()
openControlledVocabulary	physicalInteractionImpl.addINTERACTION_DASH_TYPE()
openControlledVocabulary	physicalInteraction.addINTERACTION_DASH_TYPE() Adds an anonymous value for the 'INTERACTION_DASH_TYPE' property
openControlledVocabulary	modulationImpl.addINTERACTION_DASH_TYPE()
openControlledVocabulary	conversionImpl.addINTERACTION_DASH_TYPE()
openControlledVocabulary	controlImpl.addINTERACTION_DASH_TYPE()
openControlledVocabulary	complexAssemblyImpl.addINTERACTION_DASH_TYPE()
openControlledVocabulary	catalysisImpl.addINTERACTION_DASH_TYPE()
openControlledVocabulary	biochemicalReactionImpl.addINTERACTION_DASH_TYPE()
openControlledVocabulary	transportWithBiochemicalReactionImpl.addINTERACTION_DASH_TYPE(com.hp.hpl.jena.rdf.model.Resource resource)
openControlledVocabulary	transportImpl.addINTERACTION_DASH_TYPE(com.hp.hpl.jena.rdf.model.Resource resource)
openControlledVocabulary	physicalInteractionImpl.addINTERACTION_DASH_TYPE(com.hp.hpl.jena.rdf.model.Resource resource)
openControlledVocabulary	physicalInteraction.addINTERACTION_DASH_TYPE(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'INTERACTION_DASH_TYPE' property.
openControlledVocabulary	modulationImpl.addINTERACTION_DASH_TYPE(com.hp.hpl.jena.rdf.model.Resource resource)
openControlledVocabulary	conversionImpl.addINTERACTION_DASH_TYPE(com.hp.hpl.jena.rdf.model.Resource resource)
openControlledVocabulary	controlImpl.addINTERACTION_DASH_TYPE(com.hp.hpl.jena.rdf.model.Resource resource)
openControlledVocabulary	complexAssemblyImpl.addINTERACTION_DASH_TYPE(com.hp.hpl.jena.rdf.model.Resource resource)
openControlledVocabulary	catalysisImpl.addINTERACTION_DASH_TYPE(com.hp.hpl.jena.rdf.model.Resource resource)
openControlledVocabulary	biochemicalReactionImpl.addINTERACTION_DASH_TYPE(com.hp.hpl.jena.rdf.model.Resource resource)
static openControlledVocabulary	biopax_DASH_level2_DOT_owlFactory.createopenControlledVocabulary(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of openControlledVocabulary.
static openControlledVocabulary	biopax_DASH_level2_DOT_owlFactory.createopenControlledVocabulary(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of openControlledVocabulary.
openControlledVocabulary	bioSourceImpl.getCELLTYPE()
openControlledVocabulary	bioSource.getCELLTYPE() Gets the 'CELLTYPE' property value
openControlledVocabulary	sequenceParticipantImpl.getCELLULAR_DASH_LOCATION()
openControlledVocabulary	physicalEntityParticipantImpl.getCELLULAR_DASH_LOCATION()
openControlledVocabulary	physicalEntityParticipant.getCELLULAR_DASH_LOCATION() Gets the 'CELLULAR_DASH_LOCATION' property value
openControlledVocabulary	sequenceFeatureImpl.getFEATURE_DASH_TYPE()
openControlledVocabulary	sequenceFeature.getFEATURE_DASH_TYPE() Gets the 'FEATURE_DASH_TYPE' property value
static openControlledVocabulary	biopax_DASH_level2_DOT_owlFactory.getopenControlledVocabulary(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of openControlledVocabulary.
static openControlledVocabulary	biopax_DASH_level2_DOT_owlFactory.getopenControlledVocabulary(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of openControlledVocabulary.
openControlledVocabulary	bioSourceImpl.getTISSUE()
openControlledVocabulary	bioSource.getTISSUE() Gets the 'TISSUE' property value
openControlledVocabulary	bioSourceImpl.setCELLTYPE()
openControlledVocabulary	bioSource.setCELLTYPE() Sets the 'CELLTYPE' property value to an anonymous node
openControlledVocabulary	bioSourceImpl.setCELLTYPE(com.hp.hpl.jena.rdf.model.Resource resource)
openControlledVocabulary	bioSource.setCELLTYPE(com.hp.hpl.jena.rdf.model.Resource resource) Sets the 'CELLTYPE' property value to the given resource, and add's rdf:type properties.
openControlledVocabulary	sequenceParticipantImpl.setCELLULAR_DASH_LOCATION()
openControlledVocabulary	physicalEntityParticipantImpl.setCELLULAR_DASH_LOCATION()
openControlledVocabulary	physicalEntityParticipant.setCELLULAR_DASH_LOCATION() Sets the 'CELLULAR_DASH_LOCATION' property value to an anonymous node
openControlledVocabulary	sequenceParticipantImpl.setCELLULAR_DASH_LOCATION(com.hp.hpl.jena.rdf.model.Resource resource)
openControlledVocabulary	physicalEntityParticipantImpl.setCELLULAR_DASH_LOCATION(com.hp.hpl.jena.rdf.model.Resource resource)
openControlledVocabulary	physicalEntityParticipant.setCELLULAR_DASH_LOCATION(com.hp.hpl.jena.rdf.model.Resource resource) Sets the 'CELLULAR_DASH_LOCATION' property value to the given resource, and add's rdf:type properties.
openControlledVocabulary	sequenceFeatureImpl.setFEATURE_DASH_TYPE()
openControlledVocabulary	sequenceFeature.setFEATURE_DASH_TYPE() Sets the 'FEATURE_DASH_TYPE' property value to an anonymous node
openControlledVocabulary	sequenceFeatureImpl.setFEATURE_DASH_TYPE(com.hp.hpl.jena.rdf.model.Resource resource)
openControlledVocabulary	sequenceFeature.setFEATURE_DASH_TYPE(com.hp.hpl.jena.rdf.model.Resource resource) Sets the 'FEATURE_DASH_TYPE' property value to the given resource, and add's rdf:type properties.
openControlledVocabulary	bioSourceImpl.setTISSUE()
openControlledVocabulary	bioSource.setTISSUE() Sets the 'TISSUE' property value to an anonymous node
openControlledVocabulary	bioSourceImpl.setTISSUE(com.hp.hpl.jena.rdf.model.Resource resource)
openControlledVocabulary	bioSource.setTISSUE(com.hp.hpl.jena.rdf.model.Resource resource) Sets the 'TISSUE' property value to the given resource, and add's rdf:type properties.

Methods in fr.curie.BiNoM.pathways.biopax with parameters of type openControlledVocabulary

void	evidenceImpl.addEVIDENCE_DASH_CODE(openControlledVocabulary EVIDENCE_DASH_CODE)
void	evidence.addEVIDENCE_DASH_CODE(openControlledVocabulary EVIDENCE_DASH_CODE) Adds a value for the 'EVIDENCE_DASH_CODE' property
void	experimentalFormImpl.addEXPERIMENTAL_DASH_FORM_DASH_TYPE(openControlledVocabulary EXPERIMENTAL_DASH_FORM_DASH_TYPE)
void	experimentalForm.addEXPERIMENTAL_DASH_FORM_DASH_TYPE(openControlledVocabulary EXPERIMENTAL_DASH_FORM_DASH_TYPE) Adds a value for the 'EXPERIMENTAL_DASH_FORM_DASH_TYPE' property
void	transportWithBiochemicalReactionImpl.addINTERACTION_DASH_TYPE(openControlledVocabulary INTERACTION_DASH_TYPE)
void	transportImpl.addINTERACTION_DASH_TYPE(openControlledVocabulary INTERACTION_DASH_TYPE)
void	physicalInteractionImpl.addINTERACTION_DASH_TYPE(openControlledVocabulary INTERACTION_DASH_TYPE)
void	physicalInteraction.addINTERACTION_DASH_TYPE(openControlledVocabulary INTERACTION_DASH_TYPE) Adds a value for the 'INTERACTION_DASH_TYPE' property
void	modulationImpl.addINTERACTION_DASH_TYPE(openControlledVocabulary INTERACTION_DASH_TYPE)
void	conversionImpl.addINTERACTION_DASH_TYPE(openControlledVocabulary INTERACTION_DASH_TYPE)
void	controlImpl.addINTERACTION_DASH_TYPE(openControlledVocabulary INTERACTION_DASH_TYPE)
void	complexAssemblyImpl.addINTERACTION_DASH_TYPE(openControlledVocabulary INTERACTION_DASH_TYPE)
void	catalysisImpl.addINTERACTION_DASH_TYPE(openControlledVocabulary INTERACTION_DASH_TYPE)
void	biochemicalReactionImpl.addINTERACTION_DASH_TYPE(openControlledVocabulary INTERACTION_DASH_TYPE)
void	openControlledVocabularyListener.COMMENTAdded(openControlledVocabulary source, java.lang.String newValue) Called when a value of COMMENT has been added
void	openControlledVocabularyListener.COMMENTRemoved(openControlledVocabulary source, java.lang.String oldValue) Called when a value of COMMENT has been removed
void	evidenceListener.EVIDENCE_DASH_CODEAdded(evidence source, openControlledVocabulary newValue) Called when a value of EVIDENCE_DASH_CODE has been added
void	evidenceListener.EVIDENCE_DASH_CODERemoved(evidence source, openControlledVocabulary oldValue) Called when a value of EVIDENCE_DASH_CODE has been removed
void	experimentalFormListener.EXPERIMENTAL_DASH_FORM_DASH_TYPEAdded(experimentalForm source, openControlledVocabulary newValue) Called when a value of EXPERIMENTAL_DASH_FORM_DASH_TYPE has been added
void	experimentalFormListener.EXPERIMENTAL_DASH_FORM_DASH_TYPERemoved(experimentalForm source, openControlledVocabulary oldValue) Called when a value of EXPERIMENTAL_DASH_FORM_DASH_TYPE has been removed
void	biochemicalReactionListener.INTERACTION_DASH_TYPEAdded(biochemicalReaction source, openControlledVocabulary newValue) Called when a value of INTERACTION_DASH_TYPE has been added
void	catalysisListener.INTERACTION_DASH_TYPEAdded(catalysis source, openControlledVocabulary newValue) Called when a value of INTERACTION_DASH_TYPE has been added
void	complexAssemblyListener.INTERACTION_DASH_TYPEAdded(complexAssembly source, openControlledVocabulary newValue) Called when a value of INTERACTION_DASH_TYPE has been added
void	controlListener.INTERACTION_DASH_TYPEAdded(control source, openControlledVocabulary newValue) Called when a value of INTERACTION_DASH_TYPE has been added
void	conversionListener.INTERACTION_DASH_TYPEAdded(conversion source, openControlledVocabulary newValue) Called when a value of INTERACTION_DASH_TYPE has been added
void	modulationListener.INTERACTION_DASH_TYPEAdded(modulation source, openControlledVocabulary newValue) Called when a value of INTERACTION_DASH_TYPE has been added
void	physicalInteractionListener.INTERACTION_DASH_TYPEAdded(physicalInteraction source, openControlledVocabulary newValue) Called when a value of INTERACTION_DASH_TYPE has been added
void	transportListener.INTERACTION_DASH_TYPEAdded(transport source, openControlledVocabulary newValue) Called when a value of INTERACTION_DASH_TYPE has been added
void	transportWithBiochemicalReactionListener.INTERACTION_DASH_TYPEAdded(transportWithBiochemicalReaction source, openControlledVocabulary newValue) Called when a value of INTERACTION_DASH_TYPE has been added
void	biochemicalReactionListener.INTERACTION_DASH_TYPERemoved(biochemicalReaction source, openControlledVocabulary oldValue) Called when a value of INTERACTION_DASH_TYPE has been removed
void	catalysisListener.INTERACTION_DASH_TYPERemoved(catalysis source, openControlledVocabulary oldValue) Called when a value of INTERACTION_DASH_TYPE has been removed
void	complexAssemblyListener.INTERACTION_DASH_TYPERemoved(complexAssembly source, openControlledVocabulary oldValue) Called when a value of INTERACTION_DASH_TYPE has been removed
void	controlListener.INTERACTION_DASH_TYPERemoved(control source, openControlledVocabulary oldValue) Called when a value of INTERACTION_DASH_TYPE has been removed
void	conversionListener.INTERACTION_DASH_TYPERemoved(conversion source, openControlledVocabulary oldValue) Called when a value of INTERACTION_DASH_TYPE has been removed
void	modulationListener.INTERACTION_DASH_TYPERemoved(modulation source, openControlledVocabulary oldValue) Called when a value of INTERACTION_DASH_TYPE has been removed
void	physicalInteractionListener.INTERACTION_DASH_TYPERemoved(physicalInteraction source, openControlledVocabulary oldValue) Called when a value of INTERACTION_DASH_TYPE has been removed
void	transportListener.INTERACTION_DASH_TYPERemoved(transport source, openControlledVocabulary oldValue) Called when a value of INTERACTION_DASH_TYPE has been removed
void	transportWithBiochemicalReactionListener.INTERACTION_DASH_TYPERemoved(transportWithBiochemicalReaction source, openControlledVocabulary oldValue) Called when a value of INTERACTION_DASH_TYPE has been removed
void	evidenceImpl.removeEVIDENCE_DASH_CODE(openControlledVocabulary EVIDENCE_DASH_CODE)
void	evidence.removeEVIDENCE_DASH_CODE(openControlledVocabulary EVIDENCE_DASH_CODE) Removes a value for the 'EVIDENCE_DASH_CODE' property.
void	experimentalFormImpl.removeEXPERIMENTAL_DASH_FORM_DASH_TYPE(openControlledVocabulary EXPERIMENTAL_DASH_FORM_DASH_TYPE)
void	experimentalForm.removeEXPERIMENTAL_DASH_FORM_DASH_TYPE(openControlledVocabulary EXPERIMENTAL_DASH_FORM_DASH_TYPE) Removes a value for the 'EXPERIMENTAL_DASH_FORM_DASH_TYPE' property.
void	transportWithBiochemicalReactionImpl.removeINTERACTION_DASH_TYPE(openControlledVocabulary INTERACTION_DASH_TYPE)
void	transportImpl.removeINTERACTION_DASH_TYPE(openControlledVocabulary INTERACTION_DASH_TYPE)
void	physicalInteractionImpl.removeINTERACTION_DASH_TYPE(openControlledVocabulary INTERACTION_DASH_TYPE)
void	physicalInteraction.removeINTERACTION_DASH_TYPE(openControlledVocabulary INTERACTION_DASH_TYPE) Removes a value for the 'INTERACTION_DASH_TYPE' property.
void	modulationImpl.removeINTERACTION_DASH_TYPE(openControlledVocabulary INTERACTION_DASH_TYPE)
void	conversionImpl.removeINTERACTION_DASH_TYPE(openControlledVocabulary INTERACTION_DASH_TYPE)
void	controlImpl.removeINTERACTION_DASH_TYPE(openControlledVocabulary INTERACTION_DASH_TYPE)
void	complexAssemblyImpl.removeINTERACTION_DASH_TYPE(openControlledVocabulary INTERACTION_DASH_TYPE)
void	catalysisImpl.removeINTERACTION_DASH_TYPE(openControlledVocabulary INTERACTION_DASH_TYPE)
void	biochemicalReactionImpl.removeINTERACTION_DASH_TYPE(openControlledVocabulary INTERACTION_DASH_TYPE)
void	bioSourceImpl.setCELLTYPE(openControlledVocabulary CELLTYPE)
void	bioSource.setCELLTYPE(openControlledVocabulary CELLTYPE) Sets the 'CELLTYPE' property value
void	sequenceParticipantImpl.setCELLULAR_DASH_LOCATION(openControlledVocabulary CELLULAR_DASH_LOCATION)
void	physicalEntityParticipantImpl.setCELLULAR_DASH_LOCATION(openControlledVocabulary CELLULAR_DASH_LOCATION)
void	physicalEntityParticipant.setCELLULAR_DASH_LOCATION(openControlledVocabulary CELLULAR_DASH_LOCATION) Sets the 'CELLULAR_DASH_LOCATION' property value
void	sequenceFeatureImpl.setFEATURE_DASH_TYPE(openControlledVocabulary FEATURE_DASH_TYPE)
void	sequenceFeature.setFEATURE_DASH_TYPE(openControlledVocabulary FEATURE_DASH_TYPE) Sets the 'FEATURE_DASH_TYPE' property value
void	bioSourceImpl.setTISSUE(openControlledVocabulary TISSUE)
void	bioSource.setTISSUE(openControlledVocabulary TISSUE) Sets the 'TISSUE' property value
void	openControlledVocabularyListener.TERMAdded(openControlledVocabulary source, java.lang.String newValue) Called when a value of TERM has been added
void	openControlledVocabularyListener.TERMRemoved(openControlledVocabulary source, java.lang.String oldValue) Called when a value of TERM has been removed
void	openControlledVocabularyListener.XREFAdded(openControlledVocabulary source, unificationXref newValue) Called when a value of XREF has been added
void	openControlledVocabularyListener.XREFAdded(openControlledVocabulary source, xref newValue) Called when a value of XREF has been added
void	openControlledVocabularyListener.XREFRemoved(openControlledVocabulary source, unificationXref oldValue) Called when a value of XREF has been removed
void	openControlledVocabularyListener.XREFRemoved(openControlledVocabulary source, xref oldValue) Called when a value of XREF has been removed

Uses of openControlledVocabulary in fr.curie.BiNoM.pathways.wrappers

Methods in fr.curie.BiNoM.pathways.wrappers that return openControlledVocabulary

openControlledVocabulary	BioPAX.addGOTerm(java.lang.String id, java.lang.String name) Adds to OWL model an openControlledVocabulary term
openControlledVocabulary	BioPAX.getCompartment(java.lang.String name)