Uses of Interface
fr.curie.BiNoM.pathways.biopax.physicalEntityParticipant

Packages that use physicalEntityParticipant

fr.curie.BiNoM.pathways	Set of converters for conversion of one systems biology format into an other.
fr.curie.BiNoM.pathways.biopax	Java mapping of BioPAX version 2 (generated by Jastor)
fr.curie.BiNoM.pathways.utils	Utility classes

Uses of physicalEntityParticipant in fr.curie.BiNoM.pathways

Methods in fr.curie.BiNoM.pathways that return physicalEntityParticipant

physicalEntityParticipant

CellDesignerToBioPAXConverter.createEntityParticipantForSpecies(java.lang.String id, java.util.Vector species, java.util.Vector complexes_list, java.util.HashMap physEntities, org.sbml.x2001.ns.celldesigner.SbmlDocument.Sbml sbml, BioPAX biopax, java.lang.String rId) Converts physicalEntity participant for a reaction rId

Methods in fr.curie.BiNoM.pathways with parameters of type physicalEntityParticipant

void	BioPAXToSBMLConverter.addIncludedParticipant(physicalEntityParticipant part) Adds included physicalEntityParticipant (such as complex components)
java.lang.String	BioPAXToSBMLConverter.getTypeForParticipant(physicalEntityParticipant part)

Uses of physicalEntityParticipant in fr.curie.BiNoM.pathways.biopax

Subinterfaces of physicalEntityParticipant in fr.curie.BiNoM.pathways.biopax

interface

sequenceParticipant Interface for sequenceParticipant ontology class Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.

Classes in fr.curie.BiNoM.pathways.biopax that implement physicalEntityParticipant

class	physicalEntityParticipantImpl Implementation of physicalEntityParticipant Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
class	sequenceParticipantImpl Implementation of sequenceParticipant Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.

Methods in fr.curie.BiNoM.pathways.biopax that return physicalEntityParticipant

physicalEntityParticipant	catalysisImpl.addCOFACTOR()
physicalEntityParticipant	catalysis.addCOFACTOR() Adds an anonymous value for the 'COFACTOR' property
physicalEntityParticipant	catalysisImpl.addCOFACTOR(com.hp.hpl.jena.rdf.model.Resource resource)
physicalEntityParticipant	catalysis.addCOFACTOR(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'COFACTOR' property.
physicalEntityParticipant	complexImpl.addCOMPONENTS()
physicalEntityParticipant	complex.addCOMPONENTS() Adds an anonymous value for the 'COMPONENTS' property
physicalEntityParticipant	complexImpl.addCOMPONENTS(com.hp.hpl.jena.rdf.model.Resource resource)
physicalEntityParticipant	complex.addCOMPONENTS(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'COMPONENTS' property.
physicalEntityParticipant	transportWithBiochemicalReactionImpl.addLEFT()
physicalEntityParticipant	transportImpl.addLEFT()
physicalEntityParticipant	conversionImpl.addLEFT()
physicalEntityParticipant	conversion.addLEFT() Adds an anonymous value for the 'LEFT' property
physicalEntityParticipant	complexAssemblyImpl.addLEFT()
physicalEntityParticipant	biochemicalReactionImpl.addLEFT()
physicalEntityParticipant	transportWithBiochemicalReactionImpl.addLEFT(com.hp.hpl.jena.rdf.model.Resource resource)
physicalEntityParticipant	transportImpl.addLEFT(com.hp.hpl.jena.rdf.model.Resource resource)
physicalEntityParticipant	conversionImpl.addLEFT(com.hp.hpl.jena.rdf.model.Resource resource)
physicalEntityParticipant	conversion.addLEFT(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'LEFT' property.
physicalEntityParticipant	complexAssemblyImpl.addLEFT(com.hp.hpl.jena.rdf.model.Resource resource)
physicalEntityParticipant	biochemicalReactionImpl.addLEFT(com.hp.hpl.jena.rdf.model.Resource resource)
physicalEntityParticipant	transportWithBiochemicalReactionImpl.addPARTICIPANTS_asphysicalEntityParticipant()
physicalEntityParticipant	transportImpl.addPARTICIPANTS_asphysicalEntityParticipant()
physicalEntityParticipant	physicalInteractionImpl.addPARTICIPANTS_asphysicalEntityParticipant()
physicalEntityParticipant	physicalInteraction.addPARTICIPANTS_asphysicalEntityParticipant() Adds an anonymous value for the 'PARTICIPANTS' property
physicalEntityParticipant	modulationImpl.addPARTICIPANTS_asphysicalEntityParticipant()
physicalEntityParticipant	interactionImpl.addPARTICIPANTS_asphysicalEntityParticipant()
physicalEntityParticipant	interaction.addPARTICIPANTS_asphysicalEntityParticipant() Adds an anonymous value for the 'PARTICIPANTS' property
physicalEntityParticipant	conversionImpl.addPARTICIPANTS_asphysicalEntityParticipant()
physicalEntityParticipant	conversion.addPARTICIPANTS_asphysicalEntityParticipant() Adds an anonymous value for the 'PARTICIPANTS' property
physicalEntityParticipant	controlImpl.addPARTICIPANTS_asphysicalEntityParticipant()
physicalEntityParticipant	complexAssemblyImpl.addPARTICIPANTS_asphysicalEntityParticipant()
physicalEntityParticipant	catalysisImpl.addPARTICIPANTS_asphysicalEntityParticipant()
physicalEntityParticipant	biochemicalReactionImpl.addPARTICIPANTS_asphysicalEntityParticipant()
physicalEntityParticipant	transportWithBiochemicalReactionImpl.addPARTICIPANTS_asphysicalEntityParticipant(com.hp.hpl.jena.rdf.model.Resource resource)
physicalEntityParticipant	transportImpl.addPARTICIPANTS_asphysicalEntityParticipant(com.hp.hpl.jena.rdf.model.Resource resource)
physicalEntityParticipant	physicalInteractionImpl.addPARTICIPANTS_asphysicalEntityParticipant(com.hp.hpl.jena.rdf.model.Resource resource)
physicalEntityParticipant	physicalInteraction.addPARTICIPANTS_asphysicalEntityParticipant(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'PARTICIPANTS' property.
physicalEntityParticipant	modulationImpl.addPARTICIPANTS_asphysicalEntityParticipant(com.hp.hpl.jena.rdf.model.Resource resource)
physicalEntityParticipant	interactionImpl.addPARTICIPANTS_asphysicalEntityParticipant(com.hp.hpl.jena.rdf.model.Resource resource)
physicalEntityParticipant	interaction.addPARTICIPANTS_asphysicalEntityParticipant(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'PARTICIPANTS' property.
physicalEntityParticipant	conversionImpl.addPARTICIPANTS_asphysicalEntityParticipant(com.hp.hpl.jena.rdf.model.Resource resource)
physicalEntityParticipant	conversion.addPARTICIPANTS_asphysicalEntityParticipant(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'PARTICIPANTS' property.
physicalEntityParticipant	controlImpl.addPARTICIPANTS_asphysicalEntityParticipant(com.hp.hpl.jena.rdf.model.Resource resource)
physicalEntityParticipant	complexAssemblyImpl.addPARTICIPANTS_asphysicalEntityParticipant(com.hp.hpl.jena.rdf.model.Resource resource)
physicalEntityParticipant	catalysisImpl.addPARTICIPANTS_asphysicalEntityParticipant(com.hp.hpl.jena.rdf.model.Resource resource)
physicalEntityParticipant	biochemicalReactionImpl.addPARTICIPANTS_asphysicalEntityParticipant(com.hp.hpl.jena.rdf.model.Resource resource)
physicalEntityParticipant	transportWithBiochemicalReactionImpl.addRIGHT()
physicalEntityParticipant	transportImpl.addRIGHT()
physicalEntityParticipant	conversionImpl.addRIGHT()
physicalEntityParticipant	conversion.addRIGHT() Adds an anonymous value for the 'RIGHT' property
physicalEntityParticipant	complexAssemblyImpl.addRIGHT()
physicalEntityParticipant	biochemicalReactionImpl.addRIGHT()
physicalEntityParticipant	transportWithBiochemicalReactionImpl.addRIGHT(com.hp.hpl.jena.rdf.model.Resource resource)
physicalEntityParticipant	transportImpl.addRIGHT(com.hp.hpl.jena.rdf.model.Resource resource)
physicalEntityParticipant	conversionImpl.addRIGHT(com.hp.hpl.jena.rdf.model.Resource resource)
physicalEntityParticipant	conversion.addRIGHT(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'RIGHT' property.
physicalEntityParticipant	complexAssemblyImpl.addRIGHT(com.hp.hpl.jena.rdf.model.Resource resource)
physicalEntityParticipant	biochemicalReactionImpl.addRIGHT(com.hp.hpl.jena.rdf.model.Resource resource)
static physicalEntityParticipant	biopax_DASH_level2_DOT_owlFactory.createphysicalEntityParticipant(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of physicalEntityParticipant.
static physicalEntityParticipant	biopax_DASH_level2_DOT_owlFactory.createphysicalEntityParticipant(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of physicalEntityParticipant.
physicalEntityParticipant	modulationImpl.getCONTROLLER()
physicalEntityParticipant	controlImpl.getCONTROLLER()
physicalEntityParticipant	control.getCONTROLLER() Gets the 'CONTROLLER' property value
physicalEntityParticipant	catalysisImpl.getCONTROLLER()
physicalEntityParticipant	experimentalFormImpl.getPARTICIPANT()
physicalEntityParticipant	experimentalForm.getPARTICIPANT() Gets the 'PARTICIPANT' property value
static physicalEntityParticipant	biopax_DASH_level2_DOT_owlFactory.getphysicalEntityParticipant(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of physicalEntityParticipant.
static physicalEntityParticipant	biopax_DASH_level2_DOT_owlFactory.getphysicalEntityParticipant(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of physicalEntityParticipant.
physicalEntityParticipant	modulationImpl.setCONTROLLER()
physicalEntityParticipant	controlImpl.setCONTROLLER()
physicalEntityParticipant	control.setCONTROLLER() Sets the 'CONTROLLER' property value to an anonymous node
physicalEntityParticipant	catalysisImpl.setCONTROLLER()
physicalEntityParticipant	modulationImpl.setCONTROLLER(com.hp.hpl.jena.rdf.model.Resource resource)
physicalEntityParticipant	controlImpl.setCONTROLLER(com.hp.hpl.jena.rdf.model.Resource resource)
physicalEntityParticipant	control.setCONTROLLER(com.hp.hpl.jena.rdf.model.Resource resource) Sets the 'CONTROLLER' property value to the given resource, and add's rdf:type properties.
physicalEntityParticipant	catalysisImpl.setCONTROLLER(com.hp.hpl.jena.rdf.model.Resource resource)
physicalEntityParticipant	experimentalFormImpl.setPARTICIPANT()
physicalEntityParticipant	experimentalForm.setPARTICIPANT() Sets the 'PARTICIPANT' property value to an anonymous node
physicalEntityParticipant	experimentalFormImpl.setPARTICIPANT(com.hp.hpl.jena.rdf.model.Resource resource)
physicalEntityParticipant	experimentalForm.setPARTICIPANT(com.hp.hpl.jena.rdf.model.Resource resource) Sets the 'PARTICIPANT' property value to the given resource, and add's rdf:type properties.

Methods in fr.curie.BiNoM.pathways.biopax with parameters of type physicalEntityParticipant

void	catalysisImpl.addCOFACTOR(physicalEntityParticipant COFACTOR)
void	catalysis.addCOFACTOR(physicalEntityParticipant COFACTOR) Adds a value for the 'COFACTOR' property
void	complexImpl.addCOMPONENTS(physicalEntityParticipant COMPONENTS)
void	complex.addCOMPONENTS(physicalEntityParticipant COMPONENTS) Adds a value for the 'COMPONENTS' property
void	transportWithBiochemicalReactionImpl.addLEFT(physicalEntityParticipant LEFT)
void	transportImpl.addLEFT(physicalEntityParticipant LEFT)
void	conversionImpl.addLEFT(physicalEntityParticipant LEFT)
void	conversion.addLEFT(physicalEntityParticipant LEFT) Adds a value for the 'LEFT' property
void	complexAssemblyImpl.addLEFT(physicalEntityParticipant LEFT)
void	biochemicalReactionImpl.addLEFT(physicalEntityParticipant LEFT)
void	transportWithBiochemicalReactionImpl.addPARTICIPANTS(physicalEntityParticipant PARTICIPANTS)
void	transportImpl.addPARTICIPANTS(physicalEntityParticipant PARTICIPANTS)
void	physicalInteractionImpl.addPARTICIPANTS(physicalEntityParticipant PARTICIPANTS)
void	physicalInteraction.addPARTICIPANTS(physicalEntityParticipant PARTICIPANTS) Adds a value for the 'PARTICIPANTS' property
void	modulationImpl.addPARTICIPANTS(physicalEntityParticipant PARTICIPANTS)
void	interactionImpl.addPARTICIPANTS(physicalEntityParticipant PARTICIPANTS)
void	interaction.addPARTICIPANTS(physicalEntityParticipant PARTICIPANTS) Adds a value for the 'PARTICIPANTS' property
void	conversionImpl.addPARTICIPANTS(physicalEntityParticipant PARTICIPANTS)
void	conversion.addPARTICIPANTS(physicalEntityParticipant PARTICIPANTS) Adds a value for the 'PARTICIPANTS' property
void	controlImpl.addPARTICIPANTS(physicalEntityParticipant PARTICIPANTS)
void	complexAssemblyImpl.addPARTICIPANTS(physicalEntityParticipant PARTICIPANTS)
void	catalysisImpl.addPARTICIPANTS(physicalEntityParticipant PARTICIPANTS)
void	biochemicalReactionImpl.addPARTICIPANTS(physicalEntityParticipant PARTICIPANTS)
void	transportWithBiochemicalReactionImpl.addRIGHT(physicalEntityParticipant RIGHT)
void	transportImpl.addRIGHT(physicalEntityParticipant RIGHT)
void	conversionImpl.addRIGHT(physicalEntityParticipant RIGHT)
void	conversion.addRIGHT(physicalEntityParticipant RIGHT) Adds a value for the 'RIGHT' property
void	complexAssemblyImpl.addRIGHT(physicalEntityParticipant RIGHT)
void	biochemicalReactionImpl.addRIGHT(physicalEntityParticipant RIGHT)
void	physicalEntityParticipantListener.CELLULAR_DASH_LOCATIONChanged(physicalEntityParticipant source) Called when CELLULAR_DASH_LOCATION has changed
void	catalysisListener.COFACTORAdded(catalysis source, physicalEntityParticipant newValue) Called when a value of COFACTOR has been added
void	catalysisListener.COFACTORRemoved(catalysis source, physicalEntityParticipant oldValue) Called when a value of COFACTOR has been removed
void	physicalEntityParticipantListener.COMMENTAdded(physicalEntityParticipant source, java.lang.String newValue) Called when a value of COMMENT has been added
void	physicalEntityParticipantListener.COMMENTRemoved(physicalEntityParticipant source, java.lang.String oldValue) Called when a value of COMMENT has been removed
void	complexListener.COMPONENTSAdded(complex source, physicalEntityParticipant newValue) Called when a value of COMPONENTS has been added
void	complexListener.COMPONENTSRemoved(complex source, physicalEntityParticipant oldValue) Called when a value of COMPONENTS has been removed
void	biochemicalReactionListener.LEFTAdded(biochemicalReaction source, physicalEntityParticipant newValue) Called when a value of LEFT has been added
void	complexAssemblyListener.LEFTAdded(complexAssembly source, physicalEntityParticipant newValue) Called when a value of LEFT has been added
void	conversionListener.LEFTAdded(conversion source, physicalEntityParticipant newValue) Called when a value of LEFT has been added
void	transportListener.LEFTAdded(transport source, physicalEntityParticipant newValue) Called when a value of LEFT has been added
void	transportWithBiochemicalReactionListener.LEFTAdded(transportWithBiochemicalReaction source, physicalEntityParticipant newValue) Called when a value of LEFT has been added
void	biochemicalReactionListener.LEFTRemoved(biochemicalReaction source, physicalEntityParticipant oldValue) Called when a value of LEFT has been removed
void	complexAssemblyListener.LEFTRemoved(complexAssembly source, physicalEntityParticipant oldValue) Called when a value of LEFT has been removed
void	conversionListener.LEFTRemoved(conversion source, physicalEntityParticipant oldValue) Called when a value of LEFT has been removed
void	transportListener.LEFTRemoved(transport source, physicalEntityParticipant oldValue) Called when a value of LEFT has been removed
void	transportWithBiochemicalReactionListener.LEFTRemoved(transportWithBiochemicalReaction source, physicalEntityParticipant oldValue) Called when a value of LEFT has been removed
void	biochemicalReactionListener.PARTICIPANTSAdded(biochemicalReaction source, physicalEntityParticipant newValue) Called when a value of PARTICIPANTS has been added
void	catalysisListener.PARTICIPANTSAdded(catalysis source, physicalEntityParticipant newValue) Called when a value of PARTICIPANTS has been added
void	complexAssemblyListener.PARTICIPANTSAdded(complexAssembly source, physicalEntityParticipant newValue) Called when a value of PARTICIPANTS has been added
void	controlListener.PARTICIPANTSAdded(control source, physicalEntityParticipant newValue) Called when a value of PARTICIPANTS has been added
void	conversionListener.PARTICIPANTSAdded(conversion source, physicalEntityParticipant newValue) Called when a value of PARTICIPANTS has been added
void	interactionListener.PARTICIPANTSAdded(interaction source, physicalEntityParticipant newValue) Called when a value of PARTICIPANTS has been added
void	modulationListener.PARTICIPANTSAdded(modulation source, physicalEntityParticipant newValue) Called when a value of PARTICIPANTS has been added
void	physicalInteractionListener.PARTICIPANTSAdded(physicalInteraction source, physicalEntityParticipant newValue) Called when a value of PARTICIPANTS has been added
void	transportListener.PARTICIPANTSAdded(transport source, physicalEntityParticipant newValue) Called when a value of PARTICIPANTS has been added
void	transportWithBiochemicalReactionListener.PARTICIPANTSAdded(transportWithBiochemicalReaction source, physicalEntityParticipant newValue) Called when a value of PARTICIPANTS has been added
void	biochemicalReactionListener.PARTICIPANTSRemoved(biochemicalReaction source, physicalEntityParticipant oldValue) Called when a value of PARTICIPANTS has been removed
void	catalysisListener.PARTICIPANTSRemoved(catalysis source, physicalEntityParticipant oldValue) Called when a value of PARTICIPANTS has been removed
void	complexAssemblyListener.PARTICIPANTSRemoved(complexAssembly source, physicalEntityParticipant oldValue) Called when a value of PARTICIPANTS has been removed
void	controlListener.PARTICIPANTSRemoved(control source, physicalEntityParticipant oldValue) Called when a value of PARTICIPANTS has been removed
void	conversionListener.PARTICIPANTSRemoved(conversion source, physicalEntityParticipant oldValue) Called when a value of PARTICIPANTS has been removed
void	interactionListener.PARTICIPANTSRemoved(interaction source, physicalEntityParticipant oldValue) Called when a value of PARTICIPANTS has been removed
void	modulationListener.PARTICIPANTSRemoved(modulation source, physicalEntityParticipant oldValue) Called when a value of PARTICIPANTS has been removed
void	physicalInteractionListener.PARTICIPANTSRemoved(physicalInteraction source, physicalEntityParticipant oldValue) Called when a value of PARTICIPANTS has been removed
void	transportListener.PARTICIPANTSRemoved(transport source, physicalEntityParticipant oldValue) Called when a value of PARTICIPANTS has been removed
void	transportWithBiochemicalReactionListener.PARTICIPANTSRemoved(transportWithBiochemicalReaction source, physicalEntityParticipant oldValue) Called when a value of PARTICIPANTS has been removed
void	physicalEntityParticipantListener.PHYSICAL_DASH_ENTITYChanged(physicalEntityParticipant source) Called when PHYSICAL_DASH_ENTITY has changed
void	catalysisImpl.removeCOFACTOR(physicalEntityParticipant COFACTOR)
void	catalysis.removeCOFACTOR(physicalEntityParticipant COFACTOR) Removes a value for the 'COFACTOR' property.
void	complexImpl.removeCOMPONENTS(physicalEntityParticipant COMPONENTS)
void	complex.removeCOMPONENTS(physicalEntityParticipant COMPONENTS) Removes a value for the 'COMPONENTS' property.
void	transportWithBiochemicalReactionImpl.removeLEFT(physicalEntityParticipant LEFT)
void	transportImpl.removeLEFT(physicalEntityParticipant LEFT)
void	conversionImpl.removeLEFT(physicalEntityParticipant LEFT)
void	conversion.removeLEFT(physicalEntityParticipant LEFT) Removes a value for the 'LEFT' property.
void	complexAssemblyImpl.removeLEFT(physicalEntityParticipant LEFT)
void	biochemicalReactionImpl.removeLEFT(physicalEntityParticipant LEFT)
void	transportWithBiochemicalReactionImpl.removePARTICIPANTS(physicalEntityParticipant PARTICIPANTS)
void	transportImpl.removePARTICIPANTS(physicalEntityParticipant PARTICIPANTS)
void	physicalInteractionImpl.removePARTICIPANTS(physicalEntityParticipant PARTICIPANTS)
void	physicalInteraction.removePARTICIPANTS(physicalEntityParticipant PARTICIPANTS) Removes a value for the 'PARTICIPANTS' property.
void	modulationImpl.removePARTICIPANTS(physicalEntityParticipant PARTICIPANTS)
void	interactionImpl.removePARTICIPANTS(physicalEntityParticipant PARTICIPANTS)
void	interaction.removePARTICIPANTS(physicalEntityParticipant PARTICIPANTS) Removes a value for the 'PARTICIPANTS' property.
void	conversionImpl.removePARTICIPANTS(physicalEntityParticipant PARTICIPANTS)
void	conversion.removePARTICIPANTS(physicalEntityParticipant PARTICIPANTS) Removes a value for the 'PARTICIPANTS' property.
void	controlImpl.removePARTICIPANTS(physicalEntityParticipant PARTICIPANTS)
void	complexAssemblyImpl.removePARTICIPANTS(physicalEntityParticipant PARTICIPANTS)
void	catalysisImpl.removePARTICIPANTS(physicalEntityParticipant PARTICIPANTS)
void	biochemicalReactionImpl.removePARTICIPANTS(physicalEntityParticipant PARTICIPANTS)
void	transportWithBiochemicalReactionImpl.removeRIGHT(physicalEntityParticipant RIGHT)
void	transportImpl.removeRIGHT(physicalEntityParticipant RIGHT)
void	conversionImpl.removeRIGHT(physicalEntityParticipant RIGHT)
void	conversion.removeRIGHT(physicalEntityParticipant RIGHT) Removes a value for the 'RIGHT' property.
void	complexAssemblyImpl.removeRIGHT(physicalEntityParticipant RIGHT)
void	biochemicalReactionImpl.removeRIGHT(physicalEntityParticipant RIGHT)
void	biochemicalReactionListener.RIGHTAdded(biochemicalReaction source, physicalEntityParticipant newValue) Called when a value of RIGHT has been added
void	complexAssemblyListener.RIGHTAdded(complexAssembly source, physicalEntityParticipant newValue) Called when a value of RIGHT has been added
void	conversionListener.RIGHTAdded(conversion source, physicalEntityParticipant newValue) Called when a value of RIGHT has been added
void	transportListener.RIGHTAdded(transport source, physicalEntityParticipant newValue) Called when a value of RIGHT has been added
void	transportWithBiochemicalReactionListener.RIGHTAdded(transportWithBiochemicalReaction source, physicalEntityParticipant newValue) Called when a value of RIGHT has been added
void	biochemicalReactionListener.RIGHTRemoved(biochemicalReaction source, physicalEntityParticipant oldValue) Called when a value of RIGHT has been removed
void	complexAssemblyListener.RIGHTRemoved(complexAssembly source, physicalEntityParticipant oldValue) Called when a value of RIGHT has been removed
void	conversionListener.RIGHTRemoved(conversion source, physicalEntityParticipant oldValue) Called when a value of RIGHT has been removed
void	transportListener.RIGHTRemoved(transport source, physicalEntityParticipant oldValue) Called when a value of RIGHT has been removed
void	transportWithBiochemicalReactionListener.RIGHTRemoved(transportWithBiochemicalReaction source, physicalEntityParticipant oldValue) Called when a value of RIGHT has been removed
void	modulationImpl.setCONTROLLER(physicalEntityParticipant CONTROLLER)
void	controlImpl.setCONTROLLER(physicalEntityParticipant CONTROLLER)
void	control.setCONTROLLER(physicalEntityParticipant CONTROLLER) Sets the 'CONTROLLER' property value
void	catalysisImpl.setCONTROLLER(physicalEntityParticipant CONTROLLER)
void	experimentalFormImpl.setPARTICIPANT(physicalEntityParticipant PARTICIPANT)
void	experimentalForm.setPARTICIPANT(physicalEntityParticipant PARTICIPANT) Sets the 'PARTICIPANT' property value
void	physicalEntityParticipantListener.STOICHIOMETRIC_DASH_COEFFICIENTChanged(physicalEntityParticipant source) Called when STOICHIOMETRIC_DASH_COEFFICIENT has changed

Uses of physicalEntityParticipant in fr.curie.BiNoM.pathways.utils

Methods in fr.curie.BiNoM.pathways.utils with parameters of type physicalEntityParticipant

java.lang.String

BioPAXNamingService.createNameForParticipant(physicalEntityParticipant participant, boolean addCompartment) Creates a name for physicalEntityParticipant