Uses of Interface
fr.curie.BiNoM.pathways.biopax.xref

Packages that use xref

fr.curie.BiNoM.pathways.biopax

Java mapping of BioPAX version 2 (generated by Jastor)

Uses of xref in fr.curie.BiNoM.pathways.biopax

Subinterfaces of xref in fr.curie.BiNoM.pathways.biopax

interface	publicationXref Interface for publicationXref ontology class Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
interface	relationshipXref Interface for relationshipXref ontology class Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
interface	unificationXref Interface for unificationXref ontology class Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.

Classes in fr.curie.BiNoM.pathways.biopax that implement xref

class	publicationXrefImpl Implementation of publicationXref Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
class	relationshipXrefImpl Implementation of relationshipXref Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
class	unificationXrefImpl Implementation of unificationXref Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
class	xrefImpl Implementation of xref Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.

Methods in fr.curie.BiNoM.pathways.biopax that return xref

xref	transportWithBiochemicalReactionImpl.addXREF()
xref	transportImpl.addXREF()
xref	smallMoleculeImpl.addXREF()
xref	sequenceFeatureImpl.addXREF()
xref	sequenceFeature.addXREF() Adds an anonymous value for the 'XREF' property
xref	rnaImpl.addXREF()
xref	proteinImpl.addXREF()
xref	physicalInteractionImpl.addXREF()
xref	physicalEntityImpl.addXREF()
xref	pathwayImpl.addXREF()
xref	openControlledVocabularyImpl.addXREF()
xref	openControlledVocabulary.addXREF() Adds an anonymous value for the 'XREF' property
xref	modulationImpl.addXREF()
xref	interactionImpl.addXREF()
xref	evidenceImpl.addXREF()
xref	evidence.addXREF() Adds an anonymous value for the 'XREF' property
xref	entityImpl.addXREF()
xref	entity.addXREF() Adds an anonymous value for the 'XREF' property
xref	dnaImpl.addXREF()
xref	dataSourceImpl.addXREF()
xref	dataSource.addXREF() Adds an anonymous value for the 'XREF' property
xref	conversionImpl.addXREF()
xref	controlImpl.addXREF()
xref	confidenceImpl.addXREF()
xref	confidence.addXREF() Adds an anonymous value for the 'XREF' property
xref	complexImpl.addXREF()
xref	complexAssemblyImpl.addXREF()
xref	catalysisImpl.addXREF()
xref	biochemicalReactionImpl.addXREF()
xref	transportWithBiochemicalReactionImpl.addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
xref	transportImpl.addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
xref	smallMoleculeImpl.addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
xref	sequenceFeatureImpl.addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
xref	sequenceFeature.addXREF(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'XREF' property.
xref	rnaImpl.addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
xref	proteinImpl.addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
xref	physicalInteractionImpl.addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
xref	physicalEntityImpl.addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
xref	pathwayImpl.addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
xref	openControlledVocabularyImpl.addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
xref	openControlledVocabulary.addXREF(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'XREF' property.
xref	modulationImpl.addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
xref	interactionImpl.addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
xref	evidenceImpl.addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
xref	evidence.addXREF(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'XREF' property.
xref	entityImpl.addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
xref	entity.addXREF(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'XREF' property.
xref	dnaImpl.addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
xref	dataSourceImpl.addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
xref	dataSource.addXREF(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'XREF' property.
xref	conversionImpl.addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
xref	controlImpl.addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
xref	confidenceImpl.addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
xref	confidence.addXREF(com.hp.hpl.jena.rdf.model.Resource resource) Adds a value for the 'XREF' property.
xref	complexImpl.addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
xref	complexAssemblyImpl.addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
xref	catalysisImpl.addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
xref	biochemicalReactionImpl.addXREF(com.hp.hpl.jena.rdf.model.Resource resource)
static xref	biopax_DASH_level2_DOT_owlFactory.createxref(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of xref.
static xref	biopax_DASH_level2_DOT_owlFactory.createxref(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of xref.
static xref	biopax_DASH_level2_DOT_owlFactory.getxref(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of xref.
static xref	biopax_DASH_level2_DOT_owlFactory.getxref(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model) Create a new instance of xref.

Methods in fr.curie.BiNoM.pathways.biopax with parameters of type xref

void	transportWithBiochemicalReactionImpl.addXREF(xref XREF)
void	transportImpl.addXREF(xref XREF)
void	smallMoleculeImpl.addXREF(xref XREF)
void	sequenceFeatureImpl.addXREF(xref XREF)
void	sequenceFeature.addXREF(xref XREF) Adds a value for the 'XREF' property
void	rnaImpl.addXREF(xref XREF)
void	proteinImpl.addXREF(xref XREF)
void	physicalInteractionImpl.addXREF(xref XREF)
void	physicalEntityImpl.addXREF(xref XREF)
void	pathwayImpl.addXREF(xref XREF)
void	openControlledVocabularyImpl.addXREF(xref XREF)
void	openControlledVocabulary.addXREF(xref XREF) Adds a value for the 'XREF' property
void	modulationImpl.addXREF(xref XREF)
void	interactionImpl.addXREF(xref XREF)
void	evidenceImpl.addXREF(xref XREF)
void	evidence.addXREF(xref XREF) Adds a value for the 'XREF' property
void	entityImpl.addXREF(xref XREF)
void	entity.addXREF(xref XREF) Adds a value for the 'XREF' property
void	dnaImpl.addXREF(xref XREF)
void	dataSourceImpl.addXREF(xref XREF)
void	dataSource.addXREF(xref XREF) Adds a value for the 'XREF' property
void	conversionImpl.addXREF(xref XREF)
void	controlImpl.addXREF(xref XREF)
void	confidenceImpl.addXREF(xref XREF)
void	confidence.addXREF(xref XREF) Adds a value for the 'XREF' property
void	complexImpl.addXREF(xref XREF)
void	complexAssemblyImpl.addXREF(xref XREF)
void	catalysisImpl.addXREF(xref XREF)
void	biochemicalReactionImpl.addXREF(xref XREF)
void	xrefListener.COMMENTAdded(xref source, java.lang.String newValue) Called when a value of COMMENT has been added
void	xrefListener.COMMENTRemoved(xref source, java.lang.String oldValue) Called when a value of COMMENT has been removed
void	xrefListener.DB_DASH_VERSIONChanged(xref source) Called when DB_DASH_VERSION has changed
void	xrefListener.DBChanged(xref source) Called when DB has changed
void	xrefListener.ID_DASH_VERSIONChanged(xref source) Called when ID_DASH_VERSION has changed
void	xrefListener.IDChanged(xref source) Called when ID has changed
void	transportWithBiochemicalReactionImpl.removeXREF(xref XREF)
void	transportImpl.removeXREF(xref XREF)
void	smallMoleculeImpl.removeXREF(xref XREF)
void	sequenceFeatureImpl.removeXREF(xref XREF)
void	sequenceFeature.removeXREF(xref XREF) Removes a value for the 'XREF' property.
void	rnaImpl.removeXREF(xref XREF)
void	proteinImpl.removeXREF(xref XREF)
void	physicalInteractionImpl.removeXREF(xref XREF)
void	physicalEntityImpl.removeXREF(xref XREF)
void	pathwayImpl.removeXREF(xref XREF)
void	openControlledVocabularyImpl.removeXREF(xref XREF)
void	openControlledVocabulary.removeXREF(xref XREF) Removes a value for the 'XREF' property.
void	modulationImpl.removeXREF(xref XREF)
void	interactionImpl.removeXREF(xref XREF)
void	evidenceImpl.removeXREF(xref XREF)
void	evidence.removeXREF(xref XREF) Removes a value for the 'XREF' property.
void	entityImpl.removeXREF(xref XREF)
void	entity.removeXREF(xref XREF) Removes a value for the 'XREF' property.
void	dnaImpl.removeXREF(xref XREF)
void	dataSourceImpl.removeXREF(xref XREF)
void	dataSource.removeXREF(xref XREF) Removes a value for the 'XREF' property.
void	conversionImpl.removeXREF(xref XREF)
void	controlImpl.removeXREF(xref XREF)
void	confidenceImpl.removeXREF(xref XREF)
void	confidence.removeXREF(xref XREF) Removes a value for the 'XREF' property.
void	complexImpl.removeXREF(xref XREF)
void	complexAssemblyImpl.removeXREF(xref XREF)
void	catalysisImpl.removeXREF(xref XREF)
void	biochemicalReactionImpl.removeXREF(xref XREF)
void	biochemicalReactionListener.XREFAdded(biochemicalReaction source, xref newValue) Called when a value of XREF has been added
void	catalysisListener.XREFAdded(catalysis source, xref newValue) Called when a value of XREF has been added
void	complexAssemblyListener.XREFAdded(complexAssembly source, xref newValue) Called when a value of XREF has been added
void	complexListener.XREFAdded(complex source, xref newValue) Called when a value of XREF has been added
void	confidenceListener.XREFAdded(confidence source, xref newValue) Called when a value of XREF has been added
void	controlListener.XREFAdded(control source, xref newValue) Called when a value of XREF has been added
void	conversionListener.XREFAdded(conversion source, xref newValue) Called when a value of XREF has been added
void	dataSourceListener.XREFAdded(dataSource source, xref newValue) Called when a value of XREF has been added
void	dnaListener.XREFAdded(dna source, xref newValue) Called when a value of XREF has been added
void	entityListener.XREFAdded(entity source, xref newValue) Called when a value of XREF has been added
void	evidenceListener.XREFAdded(evidence source, xref newValue) Called when a value of XREF has been added
void	interactionListener.XREFAdded(interaction source, xref newValue) Called when a value of XREF has been added
void	modulationListener.XREFAdded(modulation source, xref newValue) Called when a value of XREF has been added
void	openControlledVocabularyListener.XREFAdded(openControlledVocabulary source, xref newValue) Called when a value of XREF has been added
void	pathwayListener.XREFAdded(pathway source, xref newValue) Called when a value of XREF has been added
void	physicalEntityListener.XREFAdded(physicalEntity source, xref newValue) Called when a value of XREF has been added
void	physicalInteractionListener.XREFAdded(physicalInteraction source, xref newValue) Called when a value of XREF has been added
void	proteinListener.XREFAdded(protein source, xref newValue) Called when a value of XREF has been added
void	rnaListener.XREFAdded(rna source, xref newValue) Called when a value of XREF has been added
void	sequenceFeatureListener.XREFAdded(sequenceFeature source, xref newValue) Called when a value of XREF has been added
void	smallMoleculeListener.XREFAdded(smallMolecule source, xref newValue) Called when a value of XREF has been added
void	transportWithBiochemicalReactionListener.XREFAdded(transportWithBiochemicalReaction source, xref newValue) Called when a value of XREF has been added
void	transportListener.XREFAdded(transport source, xref newValue) Called when a value of XREF has been added
void	biochemicalReactionListener.XREFRemoved(biochemicalReaction source, xref oldValue) Called when a value of XREF has been removed
void	catalysisListener.XREFRemoved(catalysis source, xref oldValue) Called when a value of XREF has been removed
void	complexAssemblyListener.XREFRemoved(complexAssembly source, xref oldValue) Called when a value of XREF has been removed
void	complexListener.XREFRemoved(complex source, xref oldValue) Called when a value of XREF has been removed
void	confidenceListener.XREFRemoved(confidence source, xref oldValue) Called when a value of XREF has been removed
void	controlListener.XREFRemoved(control source, xref oldValue) Called when a value of XREF has been removed
void	conversionListener.XREFRemoved(conversion source, xref oldValue) Called when a value of XREF has been removed
void	dataSourceListener.XREFRemoved(dataSource source, xref oldValue) Called when a value of XREF has been removed
void	dnaListener.XREFRemoved(dna source, xref oldValue) Called when a value of XREF has been removed
void	entityListener.XREFRemoved(entity source, xref oldValue) Called when a value of XREF has been removed
void	evidenceListener.XREFRemoved(evidence source, xref oldValue) Called when a value of XREF has been removed
void	interactionListener.XREFRemoved(interaction source, xref oldValue) Called when a value of XREF has been removed
void	modulationListener.XREFRemoved(modulation source, xref oldValue) Called when a value of XREF has been removed
void	openControlledVocabularyListener.XREFRemoved(openControlledVocabulary source, xref oldValue) Called when a value of XREF has been removed
void	pathwayListener.XREFRemoved(pathway source, xref oldValue) Called when a value of XREF has been removed
void	physicalEntityListener.XREFRemoved(physicalEntity source, xref oldValue) Called when a value of XREF has been removed
void	physicalInteractionListener.XREFRemoved(physicalInteraction source, xref oldValue) Called when a value of XREF has been removed
void	proteinListener.XREFRemoved(protein source, xref oldValue) Called when a value of XREF has been removed
void	rnaListener.XREFRemoved(rna source, xref oldValue) Called when a value of XREF has been removed
void	sequenceFeatureListener.XREFRemoved(sequenceFeature source, xref oldValue) Called when a value of XREF has been removed
void	smallMoleculeListener.XREFRemoved(smallMolecule source, xref oldValue) Called when a value of XREF has been removed
void	transportWithBiochemicalReactionListener.XREFRemoved(transportWithBiochemicalReaction source, xref oldValue) Called when a value of XREF has been removed
void	transportListener.XREFRemoved(transport source, xref oldValue) Called when a value of XREF has been removed