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Uses of Interface
fr.curie.BiNoM.pathways.biopax.utilityClass

Packages that use utilityClass
fr.curie.BiNoM.pathways.biopax Java mapping of BioPAX version 2 (generated by Jastor) 
fr.curie.BiNoM.pathways.utils Utility classes 
 

Uses of utilityClass in fr.curie.BiNoM.pathways.biopax
 

Subinterfaces of utilityClass in fr.curie.BiNoM.pathways.biopax
 interface bioSource
          Interface for bioSource ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
 interface chemicalStructure
          Interface for chemicalStructure ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
 interface confidence
          Interface for confidence ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
 interface dataSource
          Interface for dataSource ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
 interface deltaGprimeO
          Interface for deltaGprimeO ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
 interface evidence
          Interface for evidence ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
 interface experimentalForm
          Interface for experimentalForm ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
 interface externalReferenceUtilityClass
          Interface for externalReferenceUtilityClass ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
 interface kPrime
          Interface for kPrime ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
 interface openControlledVocabulary
          Interface for openControlledVocabulary ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
 interface pathwayStep
          Interface for pathwayStep ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
 interface physicalEntityParticipant
          Interface for physicalEntityParticipant ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
 interface publicationXref
          Interface for publicationXref ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
 interface relationshipXref
          Interface for relationshipXref ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
 interface sequenceFeature
          Interface for sequenceFeature ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
 interface sequenceInterval
          Interface for sequenceInterval ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
 interface sequenceLocation
          Interface for sequenceLocation ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
 interface sequenceParticipant
          Interface for sequenceParticipant ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
 interface sequenceSite
          Interface for sequenceSite ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
 interface unificationXref
          Interface for unificationXref ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
 interface xref
          Interface for xref ontology class
Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this interface.
 

Classes in fr.curie.BiNoM.pathways.biopax that implement utilityClass
 class bioSourceImpl
          Implementation of bioSource Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
 class chemicalStructureImpl
          Implementation of chemicalStructure Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
 class confidenceImpl
          Implementation of confidence Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
 class dataSourceImpl
          Implementation of dataSource Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
 class deltaGprimeOImpl
          Implementation of deltaGprimeO Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
 class evidenceImpl
          Implementation of evidence Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
 class experimentalFormImpl
          Implementation of experimentalForm Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
 class externalReferenceUtilityClassImpl
          Implementation of externalReferenceUtilityClass Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
 class kPrimeImpl
          Implementation of kPrime Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
 class openControlledVocabularyImpl
          Implementation of openControlledVocabulary Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
 class pathwayStepImpl
          Implementation of pathwayStep Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
 class physicalEntityParticipantImpl
          Implementation of physicalEntityParticipant Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
 class publicationXrefImpl
          Implementation of publicationXref Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
 class relationshipXrefImpl
          Implementation of relationshipXref Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
 class sequenceFeatureImpl
          Implementation of sequenceFeature Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
 class sequenceIntervalImpl
          Implementation of sequenceInterval Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
 class sequenceLocationImpl
          Implementation of sequenceLocation Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
 class sequenceParticipantImpl
          Implementation of sequenceParticipant Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
 class sequenceSiteImpl
          Implementation of sequenceSite Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
 class unificationXrefImpl
          Implementation of unificationXref Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
 class utilityClassImpl
          Implementation of utilityClass Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
 class xrefImpl
          Implementation of xref Use the fr.curie.BiNoM.pathways.biopax.biopax_DASH_level2_DOT_owlFactory to create instances of this class.
 

Methods in fr.curie.BiNoM.pathways.biopax that return utilityClass
static utilityClass biopax_DASH_level2_DOT_owlFactory.createutilityClass(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of utilityClass.
static utilityClass biopax_DASH_level2_DOT_owlFactory.createutilityClass(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of utilityClass.
static utilityClass biopax_DASH_level2_DOT_owlFactory.getutilityClass(com.hp.hpl.jena.rdf.model.Resource resource, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of utilityClass.
static utilityClass biopax_DASH_level2_DOT_owlFactory.getutilityClass(java.lang.String uri, com.hp.hpl.jena.rdf.model.Model model)
          Create a new instance of utilityClass.
 

Methods in fr.curie.BiNoM.pathways.biopax with parameters of type utilityClass
 void utilityClassListener.COMMENTAdded(utilityClass source, java.lang.String newValue)
          Called when a value of COMMENT has been added
 void utilityClassListener.COMMENTRemoved(utilityClass source, java.lang.String oldValue)
          Called when a value of COMMENT has been removed
 

Uses of utilityClass in fr.curie.BiNoM.pathways.utils
 

Methods in fr.curie.BiNoM.pathways.utils with parameters of type utilityClass
static java.lang.String BioPAXNamingService.createUtilityId(utilityClass e)
          Creates an id for utilityClass
 java.lang.String BioPAXNamingService.createUtilityName(utilityClass e)
          Creates a name for utilityClass object
static java.util.Vector Utils.getPropertyURIs(utilityClass res, java.lang.String pname)
           
static void Utils.printPropertyURIs(utilityClass res)
          Simply prints all statement uris in the utilityClass res
 void BioPAXNamingService.printUtilityClassName(utilityClass e)
           
 void BioPAXNamingService.putUtilityClass(utilityClass e)
          Adds an utilityClass for naming
 

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